Difference between revisions of "NONHSAT023916"
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sequence = <dnaseq>GATGGATATTATGCCAAATTGCAATGCCAGACTTTACAATGTAAAATGGAAATGTTATATATATATTTTCTAGCTACCATTTCAGAGCATTTGGAAGCTGAATTACTTTCTTATTGAAAATGACTTAAGTCTTTAATTGACTTATAAGTGTGTGTGTATTTATATGTTCATATTTCCCCCCCTCTAGAACTGGGTAGATAAAGCTGAAAAACAGGCTCTTCTCTCTGAAACACTTGACCTATCAGAACTTTTCCATCCAGACACATTTCTTAATGCTCTTCGCCAGGAAACTGCAAGGGCAGTGGGTCGTTCTGTGGATAGCCTTAAATTTGTAGCCTCATGGAAAGGTCGACTGCAAGAAGCAAAGCTACAAATTAAGATCAGTGGCTTGTTACTAGAAGGATGTAGTTTTGATGGAAATCAACTTTCTGAAAATCAGCTTGATTCTCCCAGCGTGTCATCAGTGCTCCCTTGTTTTATGGGCTGGATTCCACAGGATGCATGTGGTCCATATTCTCCGGATGAGTGCATCTCTTTGCCTGTTTACACAAGTGCTGAAAGGGATCGTGTGGTTACCAATATTGATGTTCCATGTGGGGGCAACCAAGACCAGTGGATTCAGTGTGGAGCAGCTCTATTCCTAAAAAATCAGTAGAATCTAATGACAACAAAAGCCATCTTCACAAAAGGGAACATTGATTCTTTAAGCTTTAAATCAAACATGTGGTCAGTCTACATTTGAAATGTTAGTTCAAAATATTAACATATAGTTATGTTGTTGATGTCACTGAAATTTTAATGTGTAAAAGCAGCACTGTGCATCTTTTAAAGTAATAAAT</dnaseq>| | sequence = <dnaseq>GATGGATATTATGCCAAATTGCAATGCCAGACTTTACAATGTAAAATGGAAATGTTATATATATATTTTCTAGCTACCATTTCAGAGCATTTGGAAGCTGAATTACTTTCTTATTGAAAATGACTTAAGTCTTTAATTGACTTATAAGTGTGTGTGTATTTATATGTTCATATTTCCCCCCCTCTAGAACTGGGTAGATAAAGCTGAAAAACAGGCTCTTCTCTCTGAAACACTTGACCTATCAGAACTTTTCCATCCAGACACATTTCTTAATGCTCTTCGCCAGGAAACTGCAAGGGCAGTGGGTCGTTCTGTGGATAGCCTTAAATTTGTAGCCTCATGGAAAGGTCGACTGCAAGAAGCAAAGCTACAAATTAAGATCAGTGGCTTGTTACTAGAAGGATGTAGTTTTGATGGAAATCAACTTTCTGAAAATCAGCTTGATTCTCCCAGCGTGTCATCAGTGCTCCCTTGTTTTATGGGCTGGATTCCACAGGATGCATGTGGTCCATATTCTCCGGATGAGTGCATCTCTTTGCCTGTTTACACAAGTGCTGAAAGGGATCGTGTGGTTACCAATATTGATGTTCCATGTGGGGGCAACCAAGACCAGTGGATTCAGTGTGGAGCAGCTCTATTCCTAAAAAATCAGTAGAATCTAATGACAACAAAAGCCATCTTCACAAAAGGGAACATTGATTCTTTAAGCTTTAAATCAAACATGTGGTCAGTCTACATTTGAAATGTTAGTTCAAAATATTAACATATAGTTATGTTGTTGATGTCACTGAAATTTTAATGTGTAAAAGCAGCACTGTGCATCTTTTAAAGTAATAAAT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG009497]] | + | [[Category:Sense]][[Category:NONHSAG009497]][[Category:Transcripts]] |
Latest revision as of 20:43, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023916 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
839 nt |
Genomic location |
chr11+:103325727..103350165 |
Exon number |
4 |
Exons |
103325727..103326023,103327003..103327084,103339317..103339433,103349823..103350165 |
Genome context |
|
Sequence |
000001 GATGGATATT ATGCCAAATT GCAATGCCAG ACTTTACAAT GTAAAATGGA AATGTTATAT ATATATTTTC TAGCTACCAT 000080
000081 TTCAGAGCAT TTGGAAGCTG AATTACTTTC TTATTGAAAA TGACTTAAGT CTTTAATTGA CTTATAAGTG TGTGTGTATT 000160 000161 TATATGTTCA TATTTCCCCC CCTCTAGAAC TGGGTAGATA AAGCTGAAAA ACAGGCTCTT CTCTCTGAAA CACTTGACCT 000240 000241 ATCAGAACTT TTCCATCCAG ACACATTTCT TAATGCTCTT CGCCAGGAAA CTGCAAGGGC AGTGGGTCGT TCTGTGGATA 000320 000321 GCCTTAAATT TGTAGCCTCA TGGAAAGGTC GACTGCAAGA AGCAAAGCTA CAAATTAAGA TCAGTGGCTT GTTACTAGAA 000400 000401 GGATGTAGTT TTGATGGAAA TCAACTTTCT GAAAATCAGC TTGATTCTCC CAGCGTGTCA TCAGTGCTCC CTTGTTTTAT 000480 000481 GGGCTGGATT CCACAGGATG CATGTGGTCC ATATTCTCCG GATGAGTGCA TCTCTTTGCC TGTTTACACA AGTGCTGAAA 000560 000561 GGGATCGTGT GGTTACCAAT ATTGATGTTC CATGTGGGGG CAACCAAGAC CAGTGGATTC AGTGTGGAGC AGCTCTATTC 000640 000641 CTAAAAAATC AGTAGAATCT AATGACAACA AAAGCCATCT TCACAAAAGG GAACATTGAT TCTTTAAGCT TTAAATCAAA 000720 000721 CATGTGGTCA GTCTACATTT GAAATGTTAG TTCAAAATAT TAACATATAG TTATGTTGTT GATGTCACTG AAATTTTAAT 000800 000801 GTGTAAAAGC AGCACTGTGC ATCTTTTAAA GTAATAAAT |
Predicted Small Protein
Name | NONHSAT023916_smProtein_413:643 |
Length | 77 |
Molecular weight | 8613.3468 |
Aromaticity | 0.105263157895 |
Instability index | 53.2526315789 |
Isoelectric point | 9.05816650391 |
Runs | 8 |
Runs residual | 0.036146400484 |
Runs probability | 0.0435545839957 |
Amino acid sequence | MEINFLKISLILPACHQCSLVLWAGFHRMHVVHILRMSASLCLFTQVLKGIVWLPILMFH VGATKTSGFSVEQLYS |
Secondary structure | LEEEEEEEEEELLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE LLLLLLLLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHH HLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTTTT Tooooooooooooooo |