Difference between revisions of "NONHSAT097738"

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sequence = <dnaseq>GATGATGTTTCCTTTTGTATCCAGTTTGGTTTTTCTCCCTGTGAAGGTCTGTAATACTAGGGCAGCCATGAATGGGAAAGAATCTCATAGCCTGCAATGGGAAGGAAGCAAAATGGGAAGCTCCACACCTGAGAGTTGGGGGAGAGCAGGAGCAGGGAGGCTCCCAGCTGACAGATTGTGTGTGCACACAGATGGTTCTCCCTGGAAAGTTCTGCTGGCAGATCCTGGCATTGGGGAAGTTGGGAAAATACATGAACACTGTCTGCTGGGGACTGGGTGGCATGCCCTCTCCCGTGAAGAGCAGGCTAAATATTATGAATTAGCACGGAAAGAAAGACAGCTACATATGCAGCTTTATCCAGGCTGGTCTGCAAGAGACAATTATGGTAAGAAAAAGAAGAGGAAGAGAGAGAAACTACAGGAATCTGCATCAGGTACAGGTCCAAGAATGACAGCTGCCTACATCTGAAACATGGTGGAAAACGAAGCTCATTCCCAACGTGCAAAGCCAAGGCAGCGACCCCAGGACCTCTTCTGGAGATGGAAGCTTGTTGAAAACCCAGACTGTCTCCACGGCCTGCCCAGTCGACCCCAAAGGAACACTGACATCAATTTTACCCTGAGGTCACTGCTAGAGACGCTGATCCATAAAGACAATCACTGCCAACCCCTCTTTCGTCTACTGCAAGAGCCAAGTTCCAAAATAAAGCATAAAAAGGTTTTTTAAAAGGAAATGTAAAAGCACATGAGAATGCTAGCAGGCTGTGGGGCAGCTGAGCAGCTTTTCTCCCCTCATATCTGCGTGCACTTCCCAGAGCATCTTGCATCCAAACCTGTAACCTTTCGGCAAGGACGGTAACTTGGCTGCATTTG</dnaseq>|
 
sequence = <dnaseq>GATGATGTTTCCTTTTGTATCCAGTTTGGTTTTTCTCCCTGTGAAGGTCTGTAATACTAGGGCAGCCATGAATGGGAAAGAATCTCATAGCCTGCAATGGGAAGGAAGCAAAATGGGAAGCTCCACACCTGAGAGTTGGGGGAGAGCAGGAGCAGGGAGGCTCCCAGCTGACAGATTGTGTGTGCACACAGATGGTTCTCCCTGGAAAGTTCTGCTGGCAGATCCTGGCATTGGGGAAGTTGGGAAAATACATGAACACTGTCTGCTGGGGACTGGGTGGCATGCCCTCTCCCGTGAAGAGCAGGCTAAATATTATGAATTAGCACGGAAAGAAAGACAGCTACATATGCAGCTTTATCCAGGCTGGTCTGCAAGAGACAATTATGGTAAGAAAAAGAAGAGGAAGAGAGAGAAACTACAGGAATCTGCATCAGGTACAGGTCCAAGAATGACAGCTGCCTACATCTGAAACATGGTGGAAAACGAAGCTCATTCCCAACGTGCAAAGCCAAGGCAGCGACCCCAGGACCTCTTCTGGAGATGGAAGCTTGTTGAAAACCCAGACTGTCTCCACGGCCTGCCCAGTCGACCCCAAAGGAACACTGACATCAATTTTACCCTGAGGTCACTGCTAGAGACGCTGATCCATAAAGACAATCACTGCCAACCCCTCTTTCGTCTACTGCAAGAGCCAAGTTCCAAAATAAAGCATAAAAAGGTTTTTTAAAAGGAAATGTAAAAGCACATGAGAATGCTAGCAGGCTGTGGGGCAGCTGAGCAGCTTTTCTCCCCTCATATCTGCGTGCACTTCCCAGAGCATCTTGCATCCAAACCTGTAACCTTTCGGCAAGGACGGTAACTTGGCTGCATTTG</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG038593]]
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[[Category:Sense]][[Category:NONHSAG038593]][[Category:Transcripts]]

Latest revision as of 01:04, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT097738

Source

NONCODE4.0

Same with

,

Classification

sense

Length

873 nt

Genomic location

chr4-:108969510..108994052

Exon number

7

Exons

108969510..108969907,108984779..108984819,108985492..108985540,108991819..108991926,108992814..108992899,108993159..108993289,108993993..108994052

Genome context

Sequence
000001 GATGATGTTT CCTTTTGTAT CCAGTTTGGT TTTTCTCCCT GTGAAGGTCT GTAATACTAG GGCAGCCATG AATGGGAAAG 000080
000081 AATCTCATAG CCTGCAATGG GAAGGAAGCA AAATGGGAAG CTCCACACCT GAGAGTTGGG GGAGAGCAGG AGCAGGGAGG 000160
000161 CTCCCAGCTG ACAGATTGTG TGTGCACACA GATGGTTCTC CCTGGAAAGT TCTGCTGGCA GATCCTGGCA TTGGGGAAGT 000240
000241 TGGGAAAATA CATGAACACT GTCTGCTGGG GACTGGGTGG CATGCCCTCT CCCGTGAAGA GCAGGCTAAA TATTATGAAT 000320
000321 TAGCACGGAA AGAAAGACAG CTACATATGC AGCTTTATCC AGGCTGGTCT GCAAGAGACA ATTATGGTAA GAAAAAGAAG 000400
000401 AGGAAGAGAG AGAAACTACA GGAATCTGCA TCAGGTACAG GTCCAAGAAT GACAGCTGCC TACATCTGAA ACATGGTGGA 000480
000481 AAACGAAGCT CATTCCCAAC GTGCAAAGCC AAGGCAGCGA CCCCAGGACC TCTTCTGGAG ATGGAAGCTT GTTGAAAACC 000560
000561 CAGACTGTCT CCACGGCCTG CCCAGTCGAC CCCAAAGGAA CACTGACATC AATTTTACCC TGAGGTCACT GCTAGAGACG 000640
000641 CTGATCCATA AAGACAATCA CTGCCAACCC CTCTTTCGTC TACTGCAAGA GCCAAGTTCC AAAATAAAGC ATAAAAAGGT 000720
000721 TTTTTAAAAG GAAATGTAAA AGCACATGAG AATGCTAGCA GGCTGTGGGG CAGCTGAGCA GCTTTTCTCC CCTCATATCT 000800
000801 GCGTGCACTT CCCAGAGCAT CTTGCATCCA AACCTGTAAC CTTTCGGCAA GGACGGTAAC TTGGCTGCAT TTG
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Predicted Small Protein

Name NONHSAT097738_smProtein_71:322
Length 84
Molecular weight 9023.5835
Aromaticity 0.0602409638554
Instability index 61.6530120482
Isoelectric point 8.94989013672
Runs 11
Runs residual 0.00749665327979
Runs probability 0.0442340736459
Amino acid sequence MGKNLIACNGKEAKWEAPHLRVGGEQEQGGSQLTDCVCTQMVLPGKFCWQILALGKLGKY
MNTVCWGLGGMPSPVKSRLNIMN
Secondary structure LLLEEEEELLLLLEELLLLLLLLLLLLLLLLLLLLLEEEEEELLLHHHHHHHHHHHLLHH
HHHHHHLLLLLLLLLLLLLLLLL
PRMN -
PiMo -