Difference between revisions of "NONHSAT097847"
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sequence = <dnaseq>AGGCTGTACCAGAATTAACTCTGCTCAGAGTTAGATTTGCTGGTCTTAAAGTACTTTTCCTCTTTAAGATAAAActggacccttggtgctacctggagatccctctacttgttgatgggcagcttcccgggccactcctctcagGAAGTTCTTCTAAATCAGGAATGGATTGAAATCTAATGAACCGAAACTTTGGgtggttgaattcataaatgtgaaatgcacagatacaaaaggccaactgtatatttgtatcctgtaacaatatattgtttggttataatgtttgtaaattttacccatggattcctctgtgactgctttttatatttctaagatttacccatgttgttatatgtaaccataagttattcatttgtttattttttcccaatgtatgaatgtacttcaatttCcttccttccttcctttctttctctttctttcttcctttctttctctctctttctgtcttctctctttttcttcttcctttcCtttcctttcctttttttttttttttttgagatagggtctcattctgtcacc</dnaseq>| | sequence = <dnaseq>AGGCTGTACCAGAATTAACTCTGCTCAGAGTTAGATTTGCTGGTCTTAAAGTACTTTTCCTCTTTAAGATAAAActggacccttggtgctacctggagatccctctacttgttgatgggcagcttcccgggccactcctctcagGAAGTTCTTCTAAATCAGGAATGGATTGAAATCTAATGAACCGAAACTTTGGgtggttgaattcataaatgtgaaatgcacagatacaaaaggccaactgtatatttgtatcctgtaacaatatattgtttggttataatgtttgtaaattttacccatggattcctctgtgactgctttttatatttctaagatttacccatgttgttatatgtaaccataagttattcatttgtttattttttcccaatgtatgaatgtacttcaatttCcttccttccttcctttctttctctttctttcttcctttctttctctctctttctgtcttctctctttttcttcttcctttcCtttcctttcctttttttttttttttttgagatagggtctcattctgtcacc</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG038651]] | + | [[Category:Sense]][[Category:NONHSAG038651]][[Category:Transcripts]] |
Latest revision as of 01:04, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT097847 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
549 nt |
| Genomic location |
chr4+:113218552..113274168 |
| Exon number |
4 |
| Exons |
113218552..113218625,113223495..113223564,113236957..113237008,113273816..113274168 |
| Genome context |
|
| Sequence |
000001 AGGCTGTACC AGAATTAACT CTGCTCAGAG TTAGATTTGC TGGTCTTAAA GTACTTTTCC TCTTTAAGAT AAAActggac 000080
000081 ccttggtgct acctggagat ccctctactt gttgatgggc agcttcccgg gccactcctc tcagGAAGTT CTTCTAAATC 000160 000161 AGGAATGGAT TGAAATCTAA TGAACCGAAA CTTTGGgtgg ttgaattcat aaatgtgaaa tgcacagata caaaaggcca 000240 000241 actgtatatt tgtatcctgt aacaatatat tgtttggtta taatgtttgt aaattttacc catggattcc tctgtgactg 000320 000321 ctttttatat ttctaagatt tacccatgtt gttatatgta accataagtt attcatttgt ttattttttc ccaatgtatg 000400 000401 aatgtacttc aatttCcttc cttccttcct ttctttctct ttctttcttc ctttctttct ctctctttct gtcttctctc 000480 000481 tttttcttct tcctttcCtt tcctttcctt tttttttttt tttttgagat agggtctcat tctgtcacc |
Predicted Small Protein
| Name | NONHSAT097847_smProtein_401:526 |
| Length | 42 |
| Molecular weight | 5043.993 |
| Aromaticity | 0.439024390244 |
| Instability index | 49.4463414634 |
| Isoelectric point | 5.27471923828 |
| Runs | 5 |
| Runs residual | 0.054017656741 |
| Runs probability | 0.0336866278042 |
| Amino acid sequence | MYFNFLPSFLSFSFFLPFFLSLSVFSLFLLPFLSFPFFFFF |
| Secondary structure | LEELLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL |
| PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLL |
| PiMo | ooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiii |
