Difference between revisions of "NONHSAT119595"

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sequence = <dnaseq>TTTACACGAACGCCCTTCCAGGACTCTGTCTGCTTTTGGGGTGGAAGTGCCCTGCCAAAAACTCCAGCTCTCCATGCTGGCTGTGTGGCCAGCATACCTCCTGCCTTTTCAACGATTCCTCTGCCCTGGATAGAGAGCGGTGTCTCATAACAGTTTGGAAACTACAAAAGTTTCCCTGGCAGGATGAATGATTGACTCGGCAACATGTTCTTGCCTTTTGGAGTTGCCCTCCAATTTTTCCAGGCTTGATTCTGTAAATCATTTCATCTTGTAAAAATACTGGGCTGTGAGCACGGATGATCTCAAAGATGAGGAAACAGAAGCTGGGATATGTGAGTAAACATTTCCAAGGTCCTGCAGCTAATCAATGGTTGACAACTTCTTTCCTCTGCCTATGTTGCCATCCATGTCATGGTTTGTGTCAAGACTCTAGGAGAAGTCTACCATCAGCACCACAGCTACTGTGCACAAATCCAGAATGCCAGACTGAAGTCAGAAGGAAAGATCCTTTATATATTGAAAGAAGAAAGTAGAACCATTTCTGGGTCCCAGCTGTGGGAAGAGCTCCTGTGGCTGTGAATTCTGACTTCTGGGTCTTGGCACAAGGTGTGGCCAGCAAGCTAAGCTGTCCTGAGGGTGTGCAGGGCCAGGGGCTGAAGACAGTGTTGGAGCATCCACAGACTGGTTTGTCTCAAGAAGCATGTTACTAAATATGAAATAGCAAAATCTGCAAGTGGGTTTACTTTTCCCCCATAGATTAGAATGGATTCAATATTATCTCTTTATTAGTGTCACTTTTAATCACTTGTATAGCAAGTAGGACAGAAAGGTGGCTTGAAAGTCAATCATGTGAGAATTCCAGATAAATTGACTTTGCTCACAACAATCTGTTATTCATGTGACTATCAACTGTCATGTGTGCTGGGGCAAAAAAAGAAGATAAGGATTCACTGGTATCAGATAGTTCCAGGAGGGGAAACCCAGGATTGAACTTTTTCAGCCTTCTATGGTAAAATTTCCTGCTCTGTCGGTGCGCCAAAGCTTTTTTCAGTTTCCTAAACTCCCATATTCAAGAAGATAAGCTATTTTCTCTTCTTTCTCATCCTTCCTTGACAAAGCAAAGCATATTTTCATTGTCTACTCTGTGTCATCCATGCTTGGTTCCTGTCCTCAAAGAGCTTATAGTTCAAATAAAGGAGAGGGAGCATTTTACAAGGGAATTAAAGGTAAAAGATTCTGAAAGCCAGTTTAAAAAGTCGTGAGGGAGGGGTCTGGGAGAAGCTGAGCAGGGGTGAAAGGGTACGAAACATTATGGAAGGAGAACAGGGGAGCACCCTGACTACTGGGTGGAAACACCAATCAGTGGGTAGAAACCACACAGTGGTAACACTGATCAGTGGGTAGAAAACAATGACAGCAGGTATATGAGGCATGGAACACTTGGCTTATTGTAAAGTTTTCAAAATATGCAGTCCTTTCTATCCACCAGGGGTTGGGAGTTGTCTTTGTATATCAACCGTGGAAGGGCTGTTTTGGTTCATCATTCTGTGGTCTACCTGGGTAGACCTGATGCAGCCGTGTTTCTGAGGAAAGGAAGAACAGCTTTTGTTTTGTGATATGTAATGGTAGATGTAGTGCCATGGAATGATGCAGATTTCATTCAGATATTCTTGGATCTTGGCCCCAGGACTCACTCATTCTTCCCTATATGAGCATTGGTAGTTACAGGTTTTATCCTTCCTTTAATTGTAAGTCTTTTGAAGCCAAAAACTGTATCCAATTTGTCACTGTCTCCTAACAGTACTTAGCAGTGTCTGATGCATCACAGGGAGTTTGTAAATGTTTGGATAAATAAAGGGAAAACAAAAAC</dnaseq>|
 
sequence = <dnaseq>TTTACACGAACGCCCTTCCAGGACTCTGTCTGCTTTTGGGGTGGAAGTGCCCTGCCAAAAACTCCAGCTCTCCATGCTGGCTGTGTGGCCAGCATACCTCCTGCCTTTTCAACGATTCCTCTGCCCTGGATAGAGAGCGGTGTCTCATAACAGTTTGGAAACTACAAAAGTTTCCCTGGCAGGATGAATGATTGACTCGGCAACATGTTCTTGCCTTTTGGAGTTGCCCTCCAATTTTTCCAGGCTTGATTCTGTAAATCATTTCATCTTGTAAAAATACTGGGCTGTGAGCACGGATGATCTCAAAGATGAGGAAACAGAAGCTGGGATATGTGAGTAAACATTTCCAAGGTCCTGCAGCTAATCAATGGTTGACAACTTCTTTCCTCTGCCTATGTTGCCATCCATGTCATGGTTTGTGTCAAGACTCTAGGAGAAGTCTACCATCAGCACCACAGCTACTGTGCACAAATCCAGAATGCCAGACTGAAGTCAGAAGGAAAGATCCTTTATATATTGAAAGAAGAAAGTAGAACCATTTCTGGGTCCCAGCTGTGGGAAGAGCTCCTGTGGCTGTGAATTCTGACTTCTGGGTCTTGGCACAAGGTGTGGCCAGCAAGCTAAGCTGTCCTGAGGGTGTGCAGGGCCAGGGGCTGAAGACAGTGTTGGAGCATCCACAGACTGGTTTGTCTCAAGAAGCATGTTACTAAATATGAAATAGCAAAATCTGCAAGTGGGTTTACTTTTCCCCCATAGATTAGAATGGATTCAATATTATCTCTTTATTAGTGTCACTTTTAATCACTTGTATAGCAAGTAGGACAGAAAGGTGGCTTGAAAGTCAATCATGTGAGAATTCCAGATAAATTGACTTTGCTCACAACAATCTGTTATTCATGTGACTATCAACTGTCATGTGTGCTGGGGCAAAAAAAGAAGATAAGGATTCACTGGTATCAGATAGTTCCAGGAGGGGAAACCCAGGATTGAACTTTTTCAGCCTTCTATGGTAAAATTTCCTGCTCTGTCGGTGCGCCAAAGCTTTTTTCAGTTTCCTAAACTCCCATATTCAAGAAGATAAGCTATTTTCTCTTCTTTCTCATCCTTCCTTGACAAAGCAAAGCATATTTTCATTGTCTACTCTGTGTCATCCATGCTTGGTTCCTGTCCTCAAAGAGCTTATAGTTCAAATAAAGGAGAGGGAGCATTTTACAAGGGAATTAAAGGTAAAAGATTCTGAAAGCCAGTTTAAAAAGTCGTGAGGGAGGGGTCTGGGAGAAGCTGAGCAGGGGTGAAAGGGTACGAAACATTATGGAAGGAGAACAGGGGAGCACCCTGACTACTGGGTGGAAACACCAATCAGTGGGTAGAAACCACACAGTGGTAACACTGATCAGTGGGTAGAAAACAATGACAGCAGGTATATGAGGCATGGAACACTTGGCTTATTGTAAAGTTTTCAAAATATGCAGTCCTTTCTATCCACCAGGGGTTGGGAGTTGTCTTTGTATATCAACCGTGGAAGGGCTGTTTTGGTTCATCATTCTGTGGTCTACCTGGGTAGACCTGATGCAGCCGTGTTTCTGAGGAAAGGAAGAACAGCTTTTGTTTTGTGATATGTAATGGTAGATGTAGTGCCATGGAATGATGCAGATTTCATTCAGATATTCTTGGATCTTGGCCCCAGGACTCACTCATTCTTCCCTATATGAGCATTGGTAGTTACAGGTTTTATCCTTCCTTTAATTGTAAGTCTTTTGAAGCCAAAAACTGTATCCAATTTGTCACTGTCTCCTAACAGTACTTAGCAGTGTCTGATGCATCACAGGGAGTTTGTAAATGTTTGGATAAATAAAGGGAAAACAAAAAC</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG047149]]
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[[Category:Intergenic]][[Category:NONHSAG047149]][[Category:Transcripts]]

Latest revision as of 06:29, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT119595

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1870 nt

Genomic location

chr7-:25632971..25702673

Exon number

4

Exons

25632971..25634336,25697580..25697713,25701290..25701351,25702366..25702673

Genome context

Sequence
000001 TTTACACGAA CGCCCTTCCA GGACTCTGTC TGCTTTTGGG GTGGAAGTGC CCTGCCAAAA ACTCCAGCTC TCCATGCTGG 000080
000081 CTGTGTGGCC AGCATACCTC CTGCCTTTTC AACGATTCCT CTGCCCTGGA TAGAGAGCGG TGTCTCATAA CAGTTTGGAA 000160
000161 ACTACAAAAG TTTCCCTGGC AGGATGAATG ATTGACTCGG CAACATGTTC TTGCCTTTTG GAGTTGCCCT CCAATTTTTC 000240
000241 CAGGCTTGAT TCTGTAAATC ATTTCATCTT GTAAAAATAC TGGGCTGTGA GCACGGATGA TCTCAAAGAT GAGGAAACAG 000320
000321 AAGCTGGGAT ATGTGAGTAA ACATTTCCAA GGTCCTGCAG CTAATCAATG GTTGACAACT TCTTTCCTCT GCCTATGTTG 000400
000401 CCATCCATGT CATGGTTTGT GTCAAGACTC TAGGAGAAGT CTACCATCAG CACCACAGCT ACTGTGCACA AATCCAGAAT 000480
000481 GCCAGACTGA AGTCAGAAGG AAAGATCCTT TATATATTGA AAGAAGAAAG TAGAACCATT TCTGGGTCCC AGCTGTGGGA 000560
000561 AGAGCTCCTG TGGCTGTGAA TTCTGACTTC TGGGTCTTGG CACAAGGTGT GGCCAGCAAG CTAAGCTGTC CTGAGGGTGT 000640
000641 GCAGGGCCAG GGGCTGAAGA CAGTGTTGGA GCATCCACAG ACTGGTTTGT CTCAAGAAGC ATGTTACTAA ATATGAAATA 000720
000721 GCAAAATCTG CAAGTGGGTT TACTTTTCCC CCATAGATTA GAATGGATTC AATATTATCT CTTTATTAGT GTCACTTTTA 000800
000801 ATCACTTGTA TAGCAAGTAG GACAGAAAGG TGGCTTGAAA GTCAATCATG TGAGAATTCC AGATAAATTG ACTTTGCTCA 000880
000881 CAACAATCTG TTATTCATGT GACTATCAAC TGTCATGTGT GCTGGGGCAA AAAAAGAAGA TAAGGATTCA CTGGTATCAG 000960
000961 ATAGTTCCAG GAGGGGAAAC CCAGGATTGA ACTTTTTCAG CCTTCTATGG TAAAATTTCC TGCTCTGTCG GTGCGCCAAA 001040
001041 GCTTTTTTCA GTTTCCTAAA CTCCCATATT CAAGAAGATA AGCTATTTTC TCTTCTTTCT CATCCTTCCT TGACAAAGCA 001120
001121 AAGCATATTT TCATTGTCTA CTCTGTGTCA TCCATGCTTG GTTCCTGTCC TCAAAGAGCT TATAGTTCAA ATAAAGGAGA 001200
001201 GGGAGCATTT TACAAGGGAA TTAAAGGTAA AAGATTCTGA AAGCCAGTTT AAAAAGTCGT GAGGGAGGGG TCTGGGAGAA 001280
001281 GCTGAGCAGG GGTGAAAGGG TACGAAACAT TATGGAAGGA GAACAGGGGA GCACCCTGAC TACTGGGTGG AAACACCAAT 001360
001361 CAGTGGGTAG AAACCACACA GTGGTAACAC TGATCAGTGG GTAGAAAACA ATGACAGCAG GTATATGAGG CATGGAACAC 001440
001441 TTGGCTTATT GTAAAGTTTT CAAAATATGC AGTCCTTTCT ATCCACCAGG GGTTGGGAGT TGTCTTTGTA TATCAACCGT 001520
001521 GGAAGGGCTG TTTTGGTTCA TCATTCTGTG GTCTACCTGG GTAGACCTGA TGCAGCCGTG TTTCTGAGGA AAGGAAGAAC 001600
001601 AGCTTTTGTT TTGTGATATG TAATGGTAGA TGTAGTGCCA TGGAATGATG CAGATTTCAT TCAGATATTC TTGGATCTTG 001680
001681 GCCCCAGGAC TCACTCATTC TTCCCTATAT GAGCATTGGT AGTTACAGGT TTTATCCTTC CTTTAATTGT AAGTCTTTTG 001760
001761 AAGCCAAAAA CTGTATCCAA TTTGTCACTG TCTCCTAACA GTACTTAGCA GTGTCTGATG CATCACAGGG AGTTTGTAAA 001840
001841 TGTTTGGATA AATAAAGGGA AAACAAAAAC
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Predicted Small Protein

Name NONHSAT119595_smProtein_296:532
Length 79
Molecular weight 9034.5141
Aromaticity 0.0641025641026
Instability index 84.7192307692
Isoelectric point 9.45928955078
Runs 10
Runs residual 0.00547217010632
Runs probability 0.031708178767
Amino acid sequence MISKMRKQKLGYVSKHFQGPAANQWLTTSFLCLCCHPCHGLCQDSRRSLPSAPQLLCTNP
ECQTEVRRKDPLYIERRK
Secondary structure LLHHHHHHHLLLLLLLLLLLLLLHHHHHHHHEELLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLEEEELLLLEEEELL
PRMN -
PiMo -