Difference between revisions of "NONHSAT024410"

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sequence = <dnaseq>GGGGAAGGGCTGGGCTTACCCTGCCAACCCCCTGAGGAAGCTGCCCTCTGGCCCCTGTGGGGAGGAGTCAGCCCCTGGTGGGACCCTGCCCCCGCCCCTCCCTCTAGCCCCTCCAGCCCCGGAGTCTGGCCTTTGTCTTTGCCCTTGAGCTCTTGTTTGCTTCCTGTGGCTCCCTTATTCCCCCAGTCCTGCTGAGCAACATCTGGAGTGAGAGGGACACCCTGTGGAGGAGACAGACGGGCAATTATTTAAACCTGTTATTAATTTTCCATTCATCTCATTCCTTGCCAAATGTTTTCCCCTCTCCCTCCCTTAGGCAGCTAACAGTGAGTACCCCCCACTAACCCTTTGGCCAACTTGAGAGCTGATGCTGGCCAAGGATTGAGTTGACAGAGGGGAGCGCTTTGCTGATGAGATTGGCGGGAGCAGGCGGATGTGGGAGCCCAGAGCCTTGTATCAGTAGCACCCAGCAAGGGGGCAGAGGGCCTCCACCACTTTCCCGTTTGGGAACTGTTCTGGAGGGGCAGATGTTTTGAAGCTTTGAATTGCTAGGGACCTCGGAGAAGCTGCTCTGGTAGCTGAGAGAAAGAGGGAGGAGGTGACAGATGTGATGGCCTCTGTGCATCCTCTGTCACTTCCGCGCCTCCTCTCTCCCCTCGCCATGCTCTCCTCTTCCTTCCCAGTGAGCAGCTCCGGCTCCTACAGCACTCCCATTCGCAAGTCCCTGAGGCGGGCAGCACCACCTTTCAGGGCATAATTGAGGCCAACCGGAGGTGGCTGGAACGTGTCAAGAATGACCCCAGGTTACCTCTCTTCTCGTCAACACCCAAGCCAAAAGCTACTTTGAGCCTCCTGCAGCTGGGCCTTGATGAGCACAACAGAGTGAAGGTGTATCGCTTCTGAGGCCCTGAGCAGGGGCTTGGGGCAGCCCAGCCTCTCCTCCACCCAGACCAAGTGCCTGAGGAGCTGCCTGCCTTCTTCCATCTGAGAAAGCACCCTCCTTCCCCCTTTGACTTGCAGGAGCCACCAGGGACCAGGGGGTTGAGTGGAACAGTAAAGCCACACATTCTGTGACTATATAACCTATCTCAGGCTAAAATGTGTGGACTCGTACGAGCTCTTGTCATTGACATGGCAAGCTGATGGCGTGCGGTGGCTGCGGGGTATCAGGGCCGGGAGCCCTTTGGGAGGAAGGGAGGCGTTAGAGGAGCTGCCTTCGGAGGCTCAGGGAGTCCCTTTGGAGCTGGTTGTTTCCTTGGCCCTGCAGCGCACTGCTCGGGGCTCCCAAGGAGGTTGTGTGTATGGTTCTTAATTCATCAGGACAAAGACCCCCAGCATGTGTGTACCCTGGGACCCGATTTCTCTGGGCCCACATCTATCTCCAATACCTCAGCCTCAGATCAGACCCTTTCTTTTTTGTCTTTCTTCTCTTAATTTTTAAATGCCTCTTTTCTTGAGCATTCCATCTCTCTTTTTGACCCTCTCAGGACTGGGCTTAGCTGTCCAGAGCCCTGCCGGAGGGTGCTGGGGGCTGTCCCTCTGCAGGCACTGTGTTTTCCTCAGGG</dnaseq>|
 
sequence = <dnaseq>GGGGAAGGGCTGGGCTTACCCTGCCAACCCCCTGAGGAAGCTGCCCTCTGGCCCCTGTGGGGAGGAGTCAGCCCCTGGTGGGACCCTGCCCCCGCCCCTCCCTCTAGCCCCTCCAGCCCCGGAGTCTGGCCTTTGTCTTTGCCCTTGAGCTCTTGTTTGCTTCCTGTGGCTCCCTTATTCCCCCAGTCCTGCTGAGCAACATCTGGAGTGAGAGGGACACCCTGTGGAGGAGACAGACGGGCAATTATTTAAACCTGTTATTAATTTTCCATTCATCTCATTCCTTGCCAAATGTTTTCCCCTCTCCCTCCCTTAGGCAGCTAACAGTGAGTACCCCCCACTAACCCTTTGGCCAACTTGAGAGCTGATGCTGGCCAAGGATTGAGTTGACAGAGGGGAGCGCTTTGCTGATGAGATTGGCGGGAGCAGGCGGATGTGGGAGCCCAGAGCCTTGTATCAGTAGCACCCAGCAAGGGGGCAGAGGGCCTCCACCACTTTCCCGTTTGGGAACTGTTCTGGAGGGGCAGATGTTTTGAAGCTTTGAATTGCTAGGGACCTCGGAGAAGCTGCTCTGGTAGCTGAGAGAAAGAGGGAGGAGGTGACAGATGTGATGGCCTCTGTGCATCCTCTGTCACTTCCGCGCCTCCTCTCTCCCCTCGCCATGCTCTCCTCTTCCTTCCCAGTGAGCAGCTCCGGCTCCTACAGCACTCCCATTCGCAAGTCCCTGAGGCGGGCAGCACCACCTTTCAGGGCATAATTGAGGCCAACCGGAGGTGGCTGGAACGTGTCAAGAATGACCCCAGGTTACCTCTCTTCTCGTCAACACCCAAGCCAAAAGCTACTTTGAGCCTCCTGCAGCTGGGCCTTGATGAGCACAACAGAGTGAAGGTGTATCGCTTCTGAGGCCCTGAGCAGGGGCTTGGGGCAGCCCAGCCTCTCCTCCACCCAGACCAAGTGCCTGAGGAGCTGCCTGCCTTCTTCCATCTGAGAAAGCACCCTCCTTCCCCCTTTGACTTGCAGGAGCCACCAGGGACCAGGGGGTTGAGTGGAACAGTAAAGCCACACATTCTGTGACTATATAACCTATCTCAGGCTAAAATGTGTGGACTCGTACGAGCTCTTGTCATTGACATGGCAAGCTGATGGCGTGCGGTGGCTGCGGGGTATCAGGGCCGGGAGCCCTTTGGGAGGAAGGGAGGCGTTAGAGGAGCTGCCTTCGGAGGCTCAGGGAGTCCCTTTGGAGCTGGTTGTTTCCTTGGCCCTGCAGCGCACTGCTCGGGGCTCCCAAGGAGGTTGTGTGTATGGTTCTTAATTCATCAGGACAAAGACCCCCAGCATGTGTGTACCCTGGGACCCGATTTCTCTGGGCCCACATCTATCTCCAATACCTCAGCCTCAGATCAGACCCTTTCTTTTTTGTCTTTCTTCTCTTAATTTTTAAATGCCTCTTTTCTTGAGCATTCCATCTCTCTTTTTGACCCTCTCAGGACTGGGCTTAGCTGTCCAGAGCCCTGCCGGAGGGTGCTGGGGGCTGTCCCTCTGCAGGCACTGTGTTTTCCTCAGGG</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG009734]]
+
[[Category:Sense]][[Category:NONHSAG009734]][[Category:Transcripts]]

Latest revision as of 20:46, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT024410

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1565 nt

Genomic location

chr11+:117281828..117283546

Exon number

2

Exons

117281828..117282633,117282788..117283546

Genome context

Sequence
000001 GGGGAAGGGC TGGGCTTACC CTGCCAACCC CCTGAGGAAG CTGCCCTCTG GCCCCTGTGG GGAGGAGTCA GCCCCTGGTG 000080
000081 GGACCCTGCC CCCGCCCCTC CCTCTAGCCC CTCCAGCCCC GGAGTCTGGC CTTTGTCTTT GCCCTTGAGC TCTTGTTTGC 000160
000161 TTCCTGTGGC TCCCTTATTC CCCCAGTCCT GCTGAGCAAC ATCTGGAGTG AGAGGGACAC CCTGTGGAGG AGACAGACGG 000240
000241 GCAATTATTT AAACCTGTTA TTAATTTTCC ATTCATCTCA TTCCTTGCCA AATGTTTTCC CCTCTCCCTC CCTTAGGCAG 000320
000321 CTAACAGTGA GTACCCCCCA CTAACCCTTT GGCCAACTTG AGAGCTGATG CTGGCCAAGG ATTGAGTTGA CAGAGGGGAG 000400
000401 CGCTTTGCTG ATGAGATTGG CGGGAGCAGG CGGATGTGGG AGCCCAGAGC CTTGTATCAG TAGCACCCAG CAAGGGGGCA 000480
000481 GAGGGCCTCC ACCACTTTCC CGTTTGGGAA CTGTTCTGGA GGGGCAGATG TTTTGAAGCT TTGAATTGCT AGGGACCTCG 000560
000561 GAGAAGCTGC TCTGGTAGCT GAGAGAAAGA GGGAGGAGGT GACAGATGTG ATGGCCTCTG TGCATCCTCT GTCACTTCCG 000640
000641 CGCCTCCTCT CTCCCCTCGC CATGCTCTCC TCTTCCTTCC CAGTGAGCAG CTCCGGCTCC TACAGCACTC CCATTCGCAA 000720
000721 GTCCCTGAGG CGGGCAGCAC CACCTTTCAG GGCATAATTG AGGCCAACCG GAGGTGGCTG GAACGTGTCA AGAATGACCC 000800
000801 CAGGTTACCT CTCTTCTCGT CAACACCCAA GCCAAAAGCT ACTTTGAGCC TCCTGCAGCT GGGCCTTGAT GAGCACAACA 000880
000881 GAGTGAAGGT GTATCGCTTC TGAGGCCCTG AGCAGGGGCT TGGGGCAGCC CAGCCTCTCC TCCACCCAGA CCAAGTGCCT 000960
000961 GAGGAGCTGC CTGCCTTCTT CCATCTGAGA AAGCACCCTC CTTCCCCCTT TGACTTGCAG GAGCCACCAG GGACCAGGGG 001040
001041 GTTGAGTGGA ACAGTAAAGC CACACATTCT GTGACTATAT AACCTATCTC AGGCTAAAAT GTGTGGACTC GTACGAGCTC 001120
001121 TTGTCATTGA CATGGCAAGC TGATGGCGTG CGGTGGCTGC GGGGTATCAG GGCCGGGAGC CCTTTGGGAG GAAGGGAGGC 001200
001201 GTTAGAGGAG CTGCCTTCGG AGGCTCAGGG AGTCCCTTTG GAGCTGGTTG TTTCCTTGGC CCTGCAGCGC ACTGCTCGGG 001280
001281 GCTCCCAAGG AGGTTGTGTG TATGGTTCTT AATTCATCAG GACAAAGACC CCCAGCATGT GTGTACCCTG GGACCCGATT 001360
001361 TCTCTGGGCC CACATCTATC TCCAATACCT CAGCCTCAGA TCAGACCCTT TCTTTTTTGT CTTTCTTCTC TTAATTTTTA 001440
001441 AATGCCTCTT TTCTTGAGCA TTCCATCTCT CTTTTTGACC CTCTCAGGAC TGGGCTTAGC TGTCCAGAGC CCTGCCGGAG 001520
001521 GGTGCTGGGG GCTGTCCCTC TGCAGGCACT GTGTTTTCCT CAGGG
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Predicted Small Protein

Name NONHSAT024410_smProtein_1301:1456
Length 52
Molecular weight 6004.0965
Aromaticity 0.21568627451
Instability index 61.8823529412
Isoelectric point 9.30084228516
Runs 7
Runs residual 0.0169869928169
Runs probability 0.0426098367275
Amino acid sequence MVLNSSGQRPPACVYPGTRFLWAHIYLQYLSLRSDPFFFVFLLLIFKCLFS
Secondary structure LEELLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLL
PiMo oooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiii