Difference between revisions of "NONHSAT119954"

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sequence = <dnaseq>ATAATATAATATATTTTCTTCTTTCTTAACCTATGAGCAGAGACTTTGATGATGGAAATTACTTTGTAACATTCCCCATGGAGCCTAGGAAAAACAATAGAAAAAAAGCATGAAATCTTTTTCTCATAGTGAAATAGAGAAGATTCTAAGATTGGAAATCTGTGTATGTGGTGTTCTATCCCAAATAAAGAGAATTTAGGGAATTCAGGCAACAATTTTTTTCCTAATTGGAAACTTTGTTCTGATCCTGAGATGCCCACACACCCCACAGGAGACGCAGTGCTGGCCCACCACAGTGTTTGGAACACGGTCAGCATTCAGGAAACACATTCAAAATCGTCTAACTGAATTCCACTATCCACTTGTGAATGCAAACAAAATTCAAATTTCCCTGAAAATTTATTCAACTTCTATATGCCAAGCACACTGCTAAAGGCTTATCTTCTAAGTATATGCAGGCATACCCTACTCACACAAATAGCTTATTACCAGAGATAGGAAATTGCAGGTAATTTGGGAGAAATTGTCATAGCCAAATTTATGGAAAAAATAAAATAAAAACTTCTCTATGGCCTCTTGATTTAAGAAAAAAACAGAACAATACAAAAAAAAAAAAGCACTAAAACAGGATTTATCTGAGAATGTCTTTCCAAAAGGGAAGATGACACCAATCTATATAAAACGTCAGTGGATTTACTGAGAATCCGAGTGGAAACTTTTAAAACCTTAAACAGACTCTCCTACAGCAAATAGATTCTCTATGTGCAGCATGAGGAATCACTGCATAGTTCTGCTCCACCAATAATATGATTGGTACAGCACCAAACCATGGCAAAGTTAGATGTTAAAGAACATAATGTTGCAATAATGATGTTATATTGGATCTTATGCATGAACAAATGGAAAGTAATAATTTATCAACTGTGATCCATGATTAAAGGCCTCATTATCACTAAGAAAATGAACTTAATGAAAAAAATTATAATGAGCAATGACAATATTCCTATAAAACCTCCCTCTGGGTATCAAGAGACATATTACCTGCCAAGGCCAGATTTTACTTTTTAAGGTTTCCTCTCTCTCACCAAAGACACTAGTGGGCACAGAGGTGACACTAGAGTTAGAATGTTACCAGAGTCATTTGCATTAGACAGTTTATCTGATCATGAACATGTTCCCAGGGAGATTAGAAAAATGGGAAGCAGGCCTCTAAAGATCCTCCTTGGACATTTGTAAAAAGGCTGGCTGCTTCTCCAGGAATGTCTGAATTAAGCAAGAATTGTGCCACTGAAATAGCTTCTTGTTTTTATATTAAACAAGGAACGATTGTGCAGTGGATGACCTGGACTGAAAGATGTATGATGGTCAAGTTTAAACATATTAATTCCTGATTGTTTTCTTAAATACCCACCCTAGTCATTTTTTGGAAAATATTGCCAGACATATTTGACATGAATTCATGTTTATTCTGGCTTCTGTTCCCAAGCAGAAGTGGATTAACCCTGGCAATGGCTGGCTTCACTAACTGTACTTGCACCCAGCCTGGGCTGCCATCTGCTCAGCCAGGAGAAGCAGGGAGTGGGGTGTGGGCCCTTTAAGTTCGCTCAGGGCACACTCATTCAGTCTCCCCTGAGGAGACCTTGTCCCCCTTTGTGGGGTGAATGCTGGCTGTTGCAGGCCAGAGGCAGTGCCAACTGGAGACTCATCCTCTCAGCTTTGGTCAGCTTCAGCCACGTATTCTTCATGAGTGCTGGCTTCTGAACCTGCAGGATCATTTCTCAGTCAGTTTATGGTGCAGGGTAATTCATTTAAAATAAAGCCCATTAAAACCCCATGGCTATAGAATGGGTTTTAAATAGATTGTCCTGGAGACACATCATTGTATAGTCTTTGCTTCCCTCTCATGACCTATCTTGGAGTAGAATTTGTGTACTACTGTCCTTGTCTTTGAGTGGGTATATGTGTGATGGTACAGAAATACAGTCACATATTATATTAATATATATAGATGGATAGGAAAAACCTACAGCCATAGGTATTGTCCAATAACTGATTCTAGAGGTAGAACTATAGAGTATACATTTCCTTTTTTCTTGCTTTGATGATATTTTTATACAATTTTATATGCTATAAAATTTTCAAAAATATATTTGCTATTTTCATTTGTAGAGCTTGGTTAGGTTTTTATCAGCTCTTGTGCCCACTGTACAACCAGATTCCCCTCATCTAATTTAAATGTCTTCCCTTTTTCAAACTCTCCTTTATGTTTTCCTTTTTTTTTCCTCCCATTTTTCTACCCTTCACAAATTCCTTCTTTTGCTTCTGTCCAGGTAACCCATTCTGCTTGCAGTATCATTTTAGCACGTACAAACACAAAATAATGGGAAAAATAAAAGCACCTTGTTCCATGCAATTCGTATGGGAAAGTTTTGGGTGTCAAAGGTCGCTGGGGATAGATGGGGAGGCAGAAATAGCTTGGGAAAAGGAAGCAGGAAAAAAGGAAATCTTTATGGGAAATCAATTACCCAAAGCAAGGTGAGTCACCTAGAGGTGAATATGATGTTGTTATTGTCCTCCCTTAGTGTACAGCACAGTTTTTGCTCTCACAGGGTTTTTCTCTTTAGGATGCGTAGCACCCTATGCATTAAATACATAGCATCCTAAAGACACCCTACTCACCTTGAGTCTGTAGGCTCTTTCCTGATGAGGGCACTGGCCATATATGAATGGAAAACTCAACTCATCTCCTCAGCTTTAGATGTTGCTGCTGTTCAGCTGGATTTGTGAGAAATATCTGGATTACTATCAAGAACATTTAGCAAGACTCAAAAGAGAGAGGCAAGCAGAACCAAAACCCAAACCTCAACCAATGACTAGCTGAATAAACAATTCTTTGGAGGAATAAGGAAGGTATTTCTGGATGTATTCTGAGAATGCTCTTCCAAAAGGGAAGATGGTAATAATGGACTTGTTTTGATTTCATGGTTGTGATAGAATGTACTTCCATGATGTGAAATACACTTCTGGCAGATAAAATGCAGGTTGTAATTTGCATTTGTACATCACAGGGTAAAAGAATGGCCATCCATTCTGAGGAAGAGTGTTCTGTTCTCTAAGATGCTGCTTAACCAATGTTATCCAAATGCCATAGCATCATATCTCCAAATACAAGATTAAATCATAAGGATTCATGTAAAACAGAGTATACTGAGCTGTTCTCAGAAAAATTAATGATGTGTTTATTGTAAATCTTTATTGCACAGATGAGCCTGACAGTCCTTCAATGTATAATTTTCCCCCAGCATCTAGTAATGCATAAGTACTTGTATGTTCTTCTGATTACCAAATAAAAACAATGAGTTAACCTCTT</dnaseq>|
 
sequence = <dnaseq>ATAATATAATATATTTTCTTCTTTCTTAACCTATGAGCAGAGACTTTGATGATGGAAATTACTTTGTAACATTCCCCATGGAGCCTAGGAAAAACAATAGAAAAAAAGCATGAAATCTTTTTCTCATAGTGAAATAGAGAAGATTCTAAGATTGGAAATCTGTGTATGTGGTGTTCTATCCCAAATAAAGAGAATTTAGGGAATTCAGGCAACAATTTTTTTCCTAATTGGAAACTTTGTTCTGATCCTGAGATGCCCACACACCCCACAGGAGACGCAGTGCTGGCCCACCACAGTGTTTGGAACACGGTCAGCATTCAGGAAACACATTCAAAATCGTCTAACTGAATTCCACTATCCACTTGTGAATGCAAACAAAATTCAAATTTCCCTGAAAATTTATTCAACTTCTATATGCCAAGCACACTGCTAAAGGCTTATCTTCTAAGTATATGCAGGCATACCCTACTCACACAAATAGCTTATTACCAGAGATAGGAAATTGCAGGTAATTTGGGAGAAATTGTCATAGCCAAATTTATGGAAAAAATAAAATAAAAACTTCTCTATGGCCTCTTGATTTAAGAAAAAAACAGAACAATACAAAAAAAAAAAAGCACTAAAACAGGATTTATCTGAGAATGTCTTTCCAAAAGGGAAGATGACACCAATCTATATAAAACGTCAGTGGATTTACTGAGAATCCGAGTGGAAACTTTTAAAACCTTAAACAGACTCTCCTACAGCAAATAGATTCTCTATGTGCAGCATGAGGAATCACTGCATAGTTCTGCTCCACCAATAATATGATTGGTACAGCACCAAACCATGGCAAAGTTAGATGTTAAAGAACATAATGTTGCAATAATGATGTTATATTGGATCTTATGCATGAACAAATGGAAAGTAATAATTTATCAACTGTGATCCATGATTAAAGGCCTCATTATCACTAAGAAAATGAACTTAATGAAAAAAATTATAATGAGCAATGACAATATTCCTATAAAACCTCCCTCTGGGTATCAAGAGACATATTACCTGCCAAGGCCAGATTTTACTTTTTAAGGTTTCCTCTCTCTCACCAAAGACACTAGTGGGCACAGAGGTGACACTAGAGTTAGAATGTTACCAGAGTCATTTGCATTAGACAGTTTATCTGATCATGAACATGTTCCCAGGGAGATTAGAAAAATGGGAAGCAGGCCTCTAAAGATCCTCCTTGGACATTTGTAAAAAGGCTGGCTGCTTCTCCAGGAATGTCTGAATTAAGCAAGAATTGTGCCACTGAAATAGCTTCTTGTTTTTATATTAAACAAGGAACGATTGTGCAGTGGATGACCTGGACTGAAAGATGTATGATGGTCAAGTTTAAACATATTAATTCCTGATTGTTTTCTTAAATACCCACCCTAGTCATTTTTTGGAAAATATTGCCAGACATATTTGACATGAATTCATGTTTATTCTGGCTTCTGTTCCCAAGCAGAAGTGGATTAACCCTGGCAATGGCTGGCTTCACTAACTGTACTTGCACCCAGCCTGGGCTGCCATCTGCTCAGCCAGGAGAAGCAGGGAGTGGGGTGTGGGCCCTTTAAGTTCGCTCAGGGCACACTCATTCAGTCTCCCCTGAGGAGACCTTGTCCCCCTTTGTGGGGTGAATGCTGGCTGTTGCAGGCCAGAGGCAGTGCCAACTGGAGACTCATCCTCTCAGCTTTGGTCAGCTTCAGCCACGTATTCTTCATGAGTGCTGGCTTCTGAACCTGCAGGATCATTTCTCAGTCAGTTTATGGTGCAGGGTAATTCATTTAAAATAAAGCCCATTAAAACCCCATGGCTATAGAATGGGTTTTAAATAGATTGTCCTGGAGACACATCATTGTATAGTCTTTGCTTCCCTCTCATGACCTATCTTGGAGTAGAATTTGTGTACTACTGTCCTTGTCTTTGAGTGGGTATATGTGTGATGGTACAGAAATACAGTCACATATTATATTAATATATATAGATGGATAGGAAAAACCTACAGCCATAGGTATTGTCCAATAACTGATTCTAGAGGTAGAACTATAGAGTATACATTTCCTTTTTTCTTGCTTTGATGATATTTTTATACAATTTTATATGCTATAAAATTTTCAAAAATATATTTGCTATTTTCATTTGTAGAGCTTGGTTAGGTTTTTATCAGCTCTTGTGCCCACTGTACAACCAGATTCCCCTCATCTAATTTAAATGTCTTCCCTTTTTCAAACTCTCCTTTATGTTTTCCTTTTTTTTTCCTCCCATTTTTCTACCCTTCACAAATTCCTTCTTTTGCTTCTGTCCAGGTAACCCATTCTGCTTGCAGTATCATTTTAGCACGTACAAACACAAAATAATGGGAAAAATAAAAGCACCTTGTTCCATGCAATTCGTATGGGAAAGTTTTGGGTGTCAAAGGTCGCTGGGGATAGATGGGGAGGCAGAAATAGCTTGGGAAAAGGAAGCAGGAAAAAAGGAAATCTTTATGGGAAATCAATTACCCAAAGCAAGGTGAGTCACCTAGAGGTGAATATGATGTTGTTATTGTCCTCCCTTAGTGTACAGCACAGTTTTTGCTCTCACAGGGTTTTTCTCTTTAGGATGCGTAGCACCCTATGCATTAAATACATAGCATCCTAAAGACACCCTACTCACCTTGAGTCTGTAGGCTCTTTCCTGATGAGGGCACTGGCCATATATGAATGGAAAACTCAACTCATCTCCTCAGCTTTAGATGTTGCTGCTGTTCAGCTGGATTTGTGAGAAATATCTGGATTACTATCAAGAACATTTAGCAAGACTCAAAAGAGAGAGGCAAGCAGAACCAAAACCCAAACCTCAACCAATGACTAGCTGAATAAACAATTCTTTGGAGGAATAAGGAAGGTATTTCTGGATGTATTCTGAGAATGCTCTTCCAAAAGGGAAGATGGTAATAATGGACTTGTTTTGATTTCATGGTTGTGATAGAATGTACTTCCATGATGTGAAATACACTTCTGGCAGATAAAATGCAGGTTGTAATTTGCATTTGTACATCACAGGGTAAAAGAATGGCCATCCATTCTGAGGAAGAGTGTTCTGTTCTCTAAGATGCTGCTTAACCAATGTTATCCAAATGCCATAGCATCATATCTCCAAATACAAGATTAAATCATAAGGATTCATGTAAAACAGAGTATACTGAGCTGTTCTCAGAAAAATTAATGATGTGTTTATTGTAAATCTTTATTGCACAGATGAGCCTGACAGTCCTTCAATGTATAATTTTCCCCCAGCATCTAGTAATGCATAAGTACTTGTATGTTCTTCTGATTACCAAATAAAAACAATGAGTTAACCTCTT</dnaseq>|
 
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[[Category:Intronic(S)]][[Category:NONHSAG047282]]
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[[Category:Intronic(S)]][[Category:NONHSAG047282]][[Category:Transcripts]]

Latest revision as of 06:31, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT119954

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

3370 nt

Genomic location

chr7-:31823141..31826510

Exon number

1

Exons

31823141..31826510

Genome context

Sequence
000001 ATAATATAAT ATATTTTCTT CTTTCTTAAC CTATGAGCAG AGACTTTGAT GATGGAAATT ACTTTGTAAC ATTCCCCATG 000080
000081 GAGCCTAGGA AAAACAATAG AAAAAAAGCA TGAAATCTTT TTCTCATAGT GAAATAGAGA AGATTCTAAG ATTGGAAATC 000160
000161 TGTGTATGTG GTGTTCTATC CCAAATAAAG AGAATTTAGG GAATTCAGGC AACAATTTTT TTCCTAATTG GAAACTTTGT 000240
000241 TCTGATCCTG AGATGCCCAC ACACCCCACA GGAGACGCAG TGCTGGCCCA CCACAGTGTT TGGAACACGG TCAGCATTCA 000320
000321 GGAAACACAT TCAAAATCGT CTAACTGAAT TCCACTATCC ACTTGTGAAT GCAAACAAAA TTCAAATTTC CCTGAAAATT 000400
000401 TATTCAACTT CTATATGCCA AGCACACTGC TAAAGGCTTA TCTTCTAAGT ATATGCAGGC ATACCCTACT CACACAAATA 000480
000481 GCTTATTACC AGAGATAGGA AATTGCAGGT AATTTGGGAG AAATTGTCAT AGCCAAATTT ATGGAAAAAA TAAAATAAAA 000560
000561 ACTTCTCTAT GGCCTCTTGA TTTAAGAAAA AAACAGAACA ATACAAAAAA AAAAAAGCAC TAAAACAGGA TTTATCTGAG 000640
000641 AATGTCTTTC CAAAAGGGAA GATGACACCA ATCTATATAA AACGTCAGTG GATTTACTGA GAATCCGAGT GGAAACTTTT 000720
000721 AAAACCTTAA ACAGACTCTC CTACAGCAAA TAGATTCTCT ATGTGCAGCA TGAGGAATCA CTGCATAGTT CTGCTCCACC 000800
000801 AATAATATGA TTGGTACAGC ACCAAACCAT GGCAAAGTTA GATGTTAAAG AACATAATGT TGCAATAATG ATGTTATATT 000880
000881 GGATCTTATG CATGAACAAA TGGAAAGTAA TAATTTATCA ACTGTGATCC ATGATTAAAG GCCTCATTAT CACTAAGAAA 000960
000961 ATGAACTTAA TGAAAAAAAT TATAATGAGC AATGACAATA TTCCTATAAA ACCTCCCTCT GGGTATCAAG AGACATATTA 001040
001041 CCTGCCAAGG CCAGATTTTA CTTTTTAAGG TTTCCTCTCT CTCACCAAAG ACACTAGTGG GCACAGAGGT GACACTAGAG 001120
001121 TTAGAATGTT ACCAGAGTCA TTTGCATTAG ACAGTTTATC TGATCATGAA CATGTTCCCA GGGAGATTAG AAAAATGGGA 001200
001201 AGCAGGCCTC TAAAGATCCT CCTTGGACAT TTGTAAAAAG GCTGGCTGCT TCTCCAGGAA TGTCTGAATT AAGCAAGAAT 001280
001281 TGTGCCACTG AAATAGCTTC TTGTTTTTAT ATTAAACAAG GAACGATTGT GCAGTGGATG ACCTGGACTG AAAGATGTAT 001360
001361 GATGGTCAAG TTTAAACATA TTAATTCCTG ATTGTTTTCT TAAATACCCA CCCTAGTCAT TTTTTGGAAA ATATTGCCAG 001440
001441 ACATATTTGA CATGAATTCA TGTTTATTCT GGCTTCTGTT CCCAAGCAGA AGTGGATTAA CCCTGGCAAT GGCTGGCTTC 001520
001521 ACTAACTGTA CTTGCACCCA GCCTGGGCTG CCATCTGCTC AGCCAGGAGA AGCAGGGAGT GGGGTGTGGG CCCTTTAAGT 001600
001601 TCGCTCAGGG CACACTCATT CAGTCTCCCC TGAGGAGACC TTGTCCCCCT TTGTGGGGTG AATGCTGGCT GTTGCAGGCC 001680
001681 AGAGGCAGTG CCAACTGGAG ACTCATCCTC TCAGCTTTGG TCAGCTTCAG CCACGTATTC TTCATGAGTG CTGGCTTCTG 001760
001761 AACCTGCAGG ATCATTTCTC AGTCAGTTTA TGGTGCAGGG TAATTCATTT AAAATAAAGC CCATTAAAAC CCCATGGCTA 001840
001841 TAGAATGGGT TTTAAATAGA TTGTCCTGGA GACACATCAT TGTATAGTCT TTGCTTCCCT CTCATGACCT ATCTTGGAGT 001920
001921 AGAATTTGTG TACTACTGTC CTTGTCTTTG AGTGGGTATA TGTGTGATGG TACAGAAATA CAGTCACATA TTATATTAAT 002000
002001 ATATATAGAT GGATAGGAAA AACCTACAGC CATAGGTATT GTCCAATAAC TGATTCTAGA GGTAGAACTA TAGAGTATAC 002080
002081 ATTTCCTTTT TTCTTGCTTT GATGATATTT TTATACAATT TTATATGCTA TAAAATTTTC AAAAATATAT TTGCTATTTT 002160
002161 CATTTGTAGA GCTTGGTTAG GTTTTTATCA GCTCTTGTGC CCACTGTACA ACCAGATTCC CCTCATCTAA TTTAAATGTC 002240
002241 TTCCCTTTTT CAAACTCTCC TTTATGTTTT CCTTTTTTTT TCCTCCCATT TTTCTACCCT TCACAAATTC CTTCTTTTGC 002320
002321 TTCTGTCCAG GTAACCCATT CTGCTTGCAG TATCATTTTA GCACGTACAA ACACAAAATA ATGGGAAAAA TAAAAGCACC 002400
002401 TTGTTCCATG CAATTCGTAT GGGAAAGTTT TGGGTGTCAA AGGTCGCTGG GGATAGATGG GGAGGCAGAA ATAGCTTGGG 002480
002481 AAAAGGAAGC AGGAAAAAAG GAAATCTTTA TGGGAAATCA ATTACCCAAA GCAAGGTGAG TCACCTAGAG GTGAATATGA 002560
002561 TGTTGTTATT GTCCTCCCTT AGTGTACAGC ACAGTTTTTG CTCTCACAGG GTTTTTCTCT TTAGGATGCG TAGCACCCTA 002640
002641 TGCATTAAAT ACATAGCATC CTAAAGACAC CCTACTCACC TTGAGTCTGT AGGCTCTTTC CTGATGAGGG CACTGGCCAT 002720
002721 ATATGAATGG AAAACTCAAC TCATCTCCTC AGCTTTAGAT GTTGCTGCTG TTCAGCTGGA TTTGTGAGAA ATATCTGGAT 002800
002801 TACTATCAAG AACATTTAGC AAGACTCAAA AGAGAGAGGC AAGCAGAACC AAAACCCAAA CCTCAACCAA TGACTAGCTG 002880
002881 AATAAACAAT TCTTTGGAGG AATAAGGAAG GTATTTCTGG ATGTATTCTG AGAATGCTCT TCCAAAAGGG AAGATGGTAA 002960
002961 TAATGGACTT GTTTTGATTT CATGGTTGTG ATAGAATGTA CTTCCATGAT GTGAAATACA CTTCTGGCAG ATAAAATGCA 003040
003041 GGTTGTAATT TGCATTTGTA CATCACAGGG TAAAAGAATG GCCATCCATT CTGAGGAAGA GTGTTCTGTT CTCTAAGATG 003120
003121 CTGCTTAACC AATGTTATCC AAATGCCATA GCATCATATC TCCAAATACA AGATTAAATC ATAAGGATTC ATGTAAAACA 003200
003201 GAGTATACTG AGCTGTTCTC AGAAAAATTA ATGATGTGTT TATTGTAAAT CTTTATTGCA CAGATGAGCC TGACAGTCCT 003280
003281 TCAATGTATA ATTTTCCCCC AGCATCTAGT AATGCATAAG TACTTGTATG TTCTTCTGAT TACCAAATAA AAACAATGAG 003360
003361 TTAACCTCTT
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Predicted Small Protein

Name NONHSAT119954_smProtein_1661:1816
Length 52
Molecular weight 5994.996
Aromaticity 0.078431372549
Instability index 51.737254902
Isoelectric point 7.81610107422
Runs 9
Runs residual 0.0222286934576
Runs probability 0.0327189935034
Amino acid sequence MLAVAGQRQCQLETHPLSFGQLQPRILHECWLLNLQDHFSVSLWCRVIHLK
Secondary structure LHHHLLLLEEELLLLLLLLLLLLHHHHHHHHHHHHLLLLLEEEEEEEEEEL
PRMN -
PiMo -