Difference between revisions of "NONHSAT024766"

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sequence = <dnaseq>gaatctgaagaatcaggccttactaagtgccctccagtggatgctgtggggcaccacctccttgaggaccaaggcactccagctgccaggaatttggctgctaacctcacacagctgagccttccatgaaaattgctctctgccaaagagaacttcctagtccaaggtcatgtctactctccagagATGTGACTGGAGTGATTTGCACCCGGATGCCTAGACTCGCCAtctgctcaaagactgctcagaaagccctcccatgcattcccctgctgcataccagcccactctgcctgcagctgctgtctgcaggacttcatatctatgccacactgtgtaaaagctgtgcttcaagaaatcacaaaaacattttcctgcacctactacACAGCCTGAGTGCGGCATAAGTTGACCTTGCTTGCTAAGAAATGGGGCAAGAAATGCTTTTTTGTGTGTGTCATGTCTGTTTGTTTTTCAATTAAGAGAGGAAAGCATTAGGCAGATGGAATGTACATGTGAGGATGAGGAGACAGAAAACAAGTAGCCCTTTCCATCAAGATAGAGGGTTTTCTGGGGTTGCTGGCTATTGAATGTCACTCCTGATTTCTCTTTCCAAGGCACTGTACCACCAGCCTACTGAGATTGTGTGGGAGCTTTCAT</dnaseq>|
 
sequence = <dnaseq>gaatctgaagaatcaggccttactaagtgccctccagtggatgctgtggggcaccacctccttgaggaccaaggcactccagctgccaggaatttggctgctaacctcacacagctgagccttccatgaaaattgctctctgccaaagagaacttcctagtccaaggtcatgtctactctccagagATGTGACTGGAGTGATTTGCACCCGGATGCCTAGACTCGCCAtctgctcaaagactgctcagaaagccctcccatgcattcccctgctgcataccagcccactctgcctgcagctgctgtctgcaggacttcatatctatgccacactgtgtaaaagctgtgcttcaagaaatcacaaaaacattttcctgcacctactacACAGCCTGAGTGCGGCATAAGTTGACCTTGCTTGCTAAGAAATGGGGCAAGAAATGCTTTTTTGTGTGTGTCATGTCTGTTTGTTTTTCAATTAAGAGAGGAAAGCATTAGGCAGATGGAATGTACATGTGAGGATGAGGAGACAGAAAACAAGTAGCCCTTTCCATCAAGATAGAGGGTTTTCTGGGGTTGCTGGCTATTGAATGTCACTCCTGATTTCTCTTTCCAAGGCACTGTACCACCAGCCTACTGAGATTGTGTGGGAGCTTTCAT</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG009876]]
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[[Category:Intergenic]][[Category:NONHSAG009876]][[Category:Transcripts]]

Latest revision as of 20:47, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT024766

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

660 nt

Genomic location

chr11-:121899080..121908771

Exon number

3

Exons

121899080..121899553,121904022..121904170,121908735..121908771

Genome context

Sequence
000001 gaatctgaag aatcaggcct tactaagtgc cctccagtgg atgctgtggg gcaccacctc cttgaggacc aaggcactcc 000080
000081 agctgccagg aatttggctg ctaacctcac acagctgagc cttccatgaa aattgctctc tgccaaagag aacttcctag 000160
000161 tccaaggtca tgtctactct ccagagATGT GACTGGAGTG ATTTGCACCC GGATGCCTAG ACTCGCCAtc tgctcaaaga 000240
000241 ctgctcagaa agccctccca tgcattcccc tgctgcatac cagcccactc tgcctgcagc tgctgtctgc aggacttcat 000320
000321 atctatgcca cactgtgtaa aagctgtgct tcaagaaatc acaaaaacat tttcctgcac ctactacACA GCCTGAGTGC 000400
000401 GGCATAAGTT GACCTTGCTT GCTAAGAAAT GGGGCAAGAA ATGCTTTTTT GTGTGTGTCA TGTCTGTTTG TTTTTCAATT 000480
000481 AAGAGAGGAA AGCATTAGGC AGATGGAATG TACATGTGAG GATGAGGAGA CAGAAAACAA GTAGCCCTTT CCATCAAGAT 000560
000561 AGAGGGTTTT CTGGGGTTGC TGGCTATTGA ATGTCACTCC TGATTTCTCT TTCCAAGGCA CTGTACCACC AGCCTACTGA 000640
000641 GATTGTGTGG GAGCTTTCAT
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Predicted Small Protein

Name NONHSAT024766_smProtein_125:406
Length 94
Molecular weight 10163.1957
Aromaticity 0.0215053763441
Instability index 66.076344086
Isoelectric point 9.57904052734
Runs 16
Runs residual 0.0411190760653
Runs probability 0.0348823087793
Amino acid sequence MKIALCQRELPSPRSCLLSRDVTGVICTRMPRLAICSKTAQKALPCIPLLHTSPLCLQLL
SAGLHIYATLCKSCASRNHKNIFLHLLHSLSAA
Secondary structure LLEEHHHLLLLLLLLEELLLLLLEEEELLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHH
HHLLHHHHHHHHHHHHHLHHHHHHHHHHHHLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH
HHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTT
TTTTTTToooooooooooooooooooooooooo