Difference between revisions of "NONHSAT052840"
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sequence = <dnaseq>TTGAACCTAGGAGATGTAAGGAGAGTGGAAAGAAAAGAATTATTTCTGGAAGATGGGGAGCCAGTTTTGTGAAAAACGGGGAATTCAGGAGGGAGGGAAAGGTGATGAGTTTGCGTTTTTATGAGGCAGCAATGGGTTGATTGTTTGTGTCTGGAAGGCAGTGGGGATGTAGGGGAATCATAAGTATTAATAAAATGTGCTggtcgggagcagtggctcccaaagtgtaattccagcactttgggaggccgagacgggcggatcgcttgagctcttgagttccagaccaccctgggcaacatggcgaaaccccgtctctacgaaaaaattagccgggtgtggtggagcacgcctgttatcccagctactcaggaggctgaggtgggagaatcacctgagcccgggaggtagaggttgcagtgagtggagatcgtgtcaccacactccagcgtgggggacagagccagaccttgtctcaaaaaaagaaaaaaaaTTGCTCATAGGAAGTCTAGAAACCTTGGCAGTTTCTGGGGAACTTAGGAATCTAACAAGAAATAACATCAACTTTTTTCTGCAAAATCCTCCAAATCAGGAGGAAATAATTTCCTCAACTGTAGGGCTTATTCAGTTTACTGAGAtgttatgattgaattgcatccctcaaaacagatttgttgaagtcctaacccccagtaccttattatttccaaataaggtcattgtagatgtaactaattaaaatgaggacaggaaggccggcacggtggctcacgcctgtaatcccagcgctttgggaggccgaggaggggggattacgaggtcaggagatcgagaccatcctggataacacggtgaaaccccgtctctactaaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcaggaggctgaggtaggagaatggcgtgaacccgggaggcagagcttgcagcgagctgagatggcaccactgcactccagcctgggcgacagagcgagactctgtctcaaaaaaataagtaaataaataaaataaaatgaggacacgctggactggggcagggactaatccaacatggctgctgttcttatgagaagatgactctgtgaatgccatgtgaagatggaagcggagattggaatgatgctttctacaaacccagaaaggccaagggttgccaatagtcactagaaactaggagagaggcatgggccagagtccccttagagccctttgaaggaacaagcccggataacaccttgattttgggcttccagcctcctgaactggagagaataaatgaccagtttgtggtcatttgttacagcagccctaagaaactaatacaAGAGGCCATAAGGATTCCTGGTGTTGCTTTCAGAGATGGTCTGGTTCGCTAGCAAGACACAGtttatcacttagtaactgcatcaccatagtcagtttcttatcctctctgaacctcaccttcctcatttgtaaaacggagttaatggtacctacctcacagggctgcttggaggatgcatgagaaactggatgcaaagaacccagcataagataagagttcaatcaatgTGGTTTTGCCCAGTAAAGCATCCCCCCTCTTCCTGAGAAATGATTATGAATGACCTATAGGGGAATCACCCTCCTTCCTGAAAGCATTTATTCAGAAATATGCTTTGACCAGAGCCAGAAATACAAAGGAAAGAGATAAGTATTGCCTGATTTACTGTAAACCAGAATTGATGCCTCCAAAATGAAAGTCACCGTCTTCCCCCAAAAACTAGCTCCTTCTCACTTCCCTGTTTTTGTCACCCAGATGCAGGTGTCTCTGGCTCTTTCTACTCCTTCCATCATTATGTCTAGCCTGTTATCTAGTTTCTGTGTTTTTAAAACTTTTGACTGATCCAGGATACATGTGTGATACAAAAGTTTCATTAAAAAAAAAAAAAggccaggtgtggtggttcaacacttgtaataccagcactttgggagagcaaggcaggcagattcattgagcccaggagtttacgaccagcctgggcaacatggcaagaccccatctttaccaaaaataccaaaaaaaattagctgggcatagtggtatgcgcctgtagttccagctacttgggaggctgaggtgggagaatcccttgagcctgggaggtggaggtcgtagtgagcagagattgcaccactgtactcaagcctgggtggcagagtgagaccctgactaaatgaaaaacaaaaacaaCCATTGTATTTTTGCATGTGATACAACCTGATATTTTCTATTTCCTTCTTTTTTTTTTAAGTTAGGAGTGCAAAAGGTTTATTGAAAAAAACAAAAACAAACTAAAATCTGTtttgaagcctgcaggacattagagggtgatgtccaatagatagagatgcacatctgaagctaaggaggagcactgagctggggtgtatgtttggaggccgtcagcctgtagagatggtactttactcatgagaacagatacgaggagccagggagagggggtaggcgtgagaaaagcacagtgagataaggagagaactccttgggagcaccaccattagatgtggttagaggattccgattcccaagaagattgagaaacaatgttcacatttaaaaggaaaCAGGAggctgggcactgtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacctgaggtcagaagttcgagaccagcttggccaacatggtgaaaccccatctctactgaaaatacaaaaattagccgggcgtggtggtgggcgcctgtaatcacagctacttgggaggctgaggcaggagaatggcctgaacctggaggcagaggttgcagtgagccgagattgcaccactgcattccagcctgggcgataagagagagactccgtctcaaagaaaaccaaaaaacaaaaaaCACCACATTGCAATACCACTACACACCCATGAGAATACCTactggaaatctcatacattgctgatggaagtgtgggttggttgaatcactttgaaaagctggcaatatctactaaagctgaagatttgtatatcctatggtcctgcagtccaaccccgggtgtatatccaacagaatgcaaacaaatgtgcactaaaggacatgcaACTAATGGAGCTATATGtataaaattgccagtatttgccagttgtctatttgcaaaaatggcaatttcacatggttaaacctgaTtacaagaatgctcatagcagcactatttgtattagccaaaacctCAATGGCAGATTATTGTGTATATATtgaataaacgtttcacccagtaacatgggtaaatcccacaaatatgatgttgaatgaaagaagccacacagctatatataaagtacaaaaacaagccgggtgcggtggctcacgcctgtaatcctagca</dnaseq>| | sequence = <dnaseq>TTGAACCTAGGAGATGTAAGGAGAGTGGAAAGAAAAGAATTATTTCTGGAAGATGGGGAGCCAGTTTTGTGAAAAACGGGGAATTCAGGAGGGAGGGAAAGGTGATGAGTTTGCGTTTTTATGAGGCAGCAATGGGTTGATTGTTTGTGTCTGGAAGGCAGTGGGGATGTAGGGGAATCATAAGTATTAATAAAATGTGCTggtcgggagcagtggctcccaaagtgtaattccagcactttgggaggccgagacgggcggatcgcttgagctcttgagttccagaccaccctgggcaacatggcgaaaccccgtctctacgaaaaaattagccgggtgtggtggagcacgcctgttatcccagctactcaggaggctgaggtgggagaatcacctgagcccgggaggtagaggttgcagtgagtggagatcgtgtcaccacactccagcgtgggggacagagccagaccttgtctcaaaaaaagaaaaaaaaTTGCTCATAGGAAGTCTAGAAACCTTGGCAGTTTCTGGGGAACTTAGGAATCTAACAAGAAATAACATCAACTTTTTTCTGCAAAATCCTCCAAATCAGGAGGAAATAATTTCCTCAACTGTAGGGCTTATTCAGTTTACTGAGAtgttatgattgaattgcatccctcaaaacagatttgttgaagtcctaacccccagtaccttattatttccaaataaggtcattgtagatgtaactaattaaaatgaggacaggaaggccggcacggtggctcacgcctgtaatcccagcgctttgggaggccgaggaggggggattacgaggtcaggagatcgagaccatcctggataacacggtgaaaccccgtctctactaaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcaggaggctgaggtaggagaatggcgtgaacccgggaggcagagcttgcagcgagctgagatggcaccactgcactccagcctgggcgacagagcgagactctgtctcaaaaaaataagtaaataaataaaataaaatgaggacacgctggactggggcagggactaatccaacatggctgctgttcttatgagaagatgactctgtgaatgccatgtgaagatggaagcggagattggaatgatgctttctacaaacccagaaaggccaagggttgccaatagtcactagaaactaggagagaggcatgggccagagtccccttagagccctttgaaggaacaagcccggataacaccttgattttgggcttccagcctcctgaactggagagaataaatgaccagtttgtggtcatttgttacagcagccctaagaaactaatacaAGAGGCCATAAGGATTCCTGGTGTTGCTTTCAGAGATGGTCTGGTTCGCTAGCAAGACACAGtttatcacttagtaactgcatcaccatagtcagtttcttatcctctctgaacctcaccttcctcatttgtaaaacggagttaatggtacctacctcacagggctgcttggaggatgcatgagaaactggatgcaaagaacccagcataagataagagttcaatcaatgTGGTTTTGCCCAGTAAAGCATCCCCCCTCTTCCTGAGAAATGATTATGAATGACCTATAGGGGAATCACCCTCCTTCCTGAAAGCATTTATTCAGAAATATGCTTTGACCAGAGCCAGAAATACAAAGGAAAGAGATAAGTATTGCCTGATTTACTGTAAACCAGAATTGATGCCTCCAAAATGAAAGTCACCGTCTTCCCCCAAAAACTAGCTCCTTCTCACTTCCCTGTTTTTGTCACCCAGATGCAGGTGTCTCTGGCTCTTTCTACTCCTTCCATCATTATGTCTAGCCTGTTATCTAGTTTCTGTGTTTTTAAAACTTTTGACTGATCCAGGATACATGTGTGATACAAAAGTTTCATTAAAAAAAAAAAAAggccaggtgtggtggttcaacacttgtaataccagcactttgggagagcaaggcaggcagattcattgagcccaggagtttacgaccagcctgggcaacatggcaagaccccatctttaccaaaaataccaaaaaaaattagctgggcatagtggtatgcgcctgtagttccagctacttgggaggctgaggtgggagaatcccttgagcctgggaggtggaggtcgtagtgagcagagattgcaccactgtactcaagcctgggtggcagagtgagaccctgactaaatgaaaaacaaaaacaaCCATTGTATTTTTGCATGTGATACAACCTGATATTTTCTATTTCCTTCTTTTTTTTTTAAGTTAGGAGTGCAAAAGGTTTATTGAAAAAAACAAAAACAAACTAAAATCTGTtttgaagcctgcaggacattagagggtgatgtccaatagatagagatgcacatctgaagctaaggaggagcactgagctggggtgtatgtttggaggccgtcagcctgtagagatggtactttactcatgagaacagatacgaggagccagggagagggggtaggcgtgagaaaagcacagtgagataaggagagaactccttgggagcaccaccattagatgtggttagaggattccgattcccaagaagattgagaaacaatgttcacatttaaaaggaaaCAGGAggctgggcactgtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacctgaggtcagaagttcgagaccagcttggccaacatggtgaaaccccatctctactgaaaatacaaaaattagccgggcgtggtggtgggcgcctgtaatcacagctacttgggaggctgaggcaggagaatggcctgaacctggaggcagaggttgcagtgagccgagattgcaccactgcattccagcctgggcgataagagagagactccgtctcaaagaaaaccaaaaaacaaaaaaCACCACATTGCAATACCACTACACACCCATGAGAATACCTactggaaatctcatacattgctgatggaagtgtgggttggttgaatcactttgaaaagctggcaatatctactaaagctgaagatttgtatatcctatggtcctgcagtccaaccccgggtgtatatccaacagaatgcaaacaaatgtgcactaaaggacatgcaACTAATGGAGCTATATGtataaaattgccagtatttgccagttgtctatttgcaaaaatggcaatttcacatggttaaacctgaTtacaagaatgctcatagcagcactatttgtattagccaaaacctCAATGGCAGATTATTGTGTATATATtgaataaacgtttcacccagtaacatgggtaaatcccacaaatatgatgttgaatgaaagaagccacacagctatatataaagtacaaaaacaagccgggtgcggtggctcacgcctgtaatcctagca</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG021421]] | + | [[Category:Intergenic]][[Category:NONHSAG021421]][[Category:Transcripts]] |
Latest revision as of 22:14, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052840 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3480 nt |
Genomic location |
chr17+:29234392..29237871 |
Exon number |
1 |
Exons |
29234392..29237871 |
Genome context |
|
Sequence |
000001 TTGAACCTAG GAGATGTAAG GAGAGTGGAA AGAAAAGAAT TATTTCTGGA AGATGGGGAG CCAGTTTTGT GAAAAACGGG 000080
000081 GAATTCAGGA GGGAGGGAAA GGTGATGAGT TTGCGTTTTT ATGAGGCAGC AATGGGTTGA TTGTTTGTGT CTGGAAGGCA 000160 000161 GTGGGGATGT AGGGGAATCA TAAGTATTAA TAAAATGTGC Tggtcgggag cagtggctcc caaagtgtaa ttccagcact 000240 000241 ttgggaggcc gagacgggcg gatcgcttga gctcttgagt tccagaccac cctgggcaac atggcgaaac cccgtctcta 000320 000321 cgaaaaaatt agccgggtgt ggtggagcac gcctgttatc ccagctactc aggaggctga ggtgggagaa tcacctgagc 000400 000401 ccgggaggta gaggttgcag tgagtggaga tcgtgtcacc acactccagc gtgggggaca gagccagacc ttgtctcaaa 000480 000481 aaaagaaaaa aaaTTGCTCA TAGGAAGTCT AGAAACCTTG GCAGTTTCTG GGGAACTTAG GAATCTAACA AGAAATAACA 000560 000561 TCAACTTTTT TCTGCAAAAT CCTCCAAATC AGGAGGAAAT AATTTCCTCA ACTGTAGGGC TTATTCAGTT TACTGAGAtg 000640 000641 ttatgattga attgcatccc tcaaaacaga tttgttgaag tcctaacccc cagtacctta ttatttccaa ataaggtcat 000720 000721 tgtagatgta actaattaaa atgaggacag gaaggccggc acggtggctc acgcctgtaa tcccagcgct ttgggaggcc 000800 000801 gaggaggggg gattacgagg tcaggagatc gagaccatcc tggataacac ggtgaaaccc cgtctctact aaaaaataca 000880 000881 aaaaattagc cgggcgtggt ggcgggcgcc tgtagtccca gctactcagg aggctgaggt aggagaatgg cgtgaacccg 000960 000961 ggaggcagag cttgcagcga gctgagatgg caccactgca ctccagcctg ggcgacagag cgagactctg tctcaaaaaa 001040 001041 ataagtaaat aaataaaata aaatgaggac acgctggact ggggcaggga ctaatccaac atggctgctg ttcttatgag 001120 001121 aagatgactc tgtgaatgcc atgtgaagat ggaagcggag attggaatga tgctttctac aaacccagaa aggccaaggg 001200 001201 ttgccaatag tcactagaaa ctaggagaga ggcatgggcc agagtcccct tagagccctt tgaaggaaca agcccggata 001280 001281 acaccttgat tttgggcttc cagcctcctg aactggagag aataaatgac cagtttgtgg tcatttgtta cagcagccct 001360 001361 aagaaactaa tacaAGAGGC CATAAGGATT CCTGGTGTTG CTTTCAGAGA TGGTCTGGTT CGCTAGCAAG ACACAGttta 001440 001441 tcacttagta actgcatcac catagtcagt ttcttatcct ctctgaacct caccttcctc atttgtaaaa cggagttaat 001520 001521 ggtacctacc tcacagggct gcttggagga tgcatgagaa actggatgca aagaacccag cataagataa gagttcaatc 001600 001601 aatgTGGTTT TGCCCAGTAA AGCATCCCCC CTCTTCCTGA GAAATGATTA TGAATGACCT ATAGGGGAAT CACCCTCCTT 001680 001681 CCTGAAAGCA TTTATTCAGA AATATGCTTT GACCAGAGCC AGAAATACAA AGGAAAGAGA TAAGTATTGC CTGATTTACT 001760 001761 GTAAACCAGA ATTGATGCCT CCAAAATGAA AGTCACCGTC TTCCCCCAAA AACTAGCTCC TTCTCACTTC CCTGTTTTTG 001840 001841 TCACCCAGAT GCAGGTGTCT CTGGCTCTTT CTACTCCTTC CATCATTATG TCTAGCCTGT TATCTAGTTT CTGTGTTTTT 001920 001921 AAAACTTTTG ACTGATCCAG GATACATGTG TGATACAAAA GTTTCATTAA AAAAAAAAAA Aggccaggtg tggtggttca 002000 002001 acacttgtaa taccagcact ttgggagagc aaggcaggca gattcattga gcccaggagt ttacgaccag cctgggcaac 002080 002081 atggcaagac cccatcttta ccaaaaatac caaaaaaaat tagctgggca tagtggtatg cgcctgtagt tccagctact 002160 002161 tgggaggctg aggtgggaga atcccttgag cctgggaggt ggaggtcgta gtgagcagag attgcaccac tgtactcaag 002240 002241 cctgggtggc agagtgagac cctgactaaa tgaaaaacaa aaacaaCCAT TGTATTTTTG CATGTGATAC AACCTGATAT 002320 002321 TTTCTATTTC CTTCTTTTTT TTTTAAGTTA GGAGTGCAAA AGGTTTATTG AAAAAAACAA AAACAAACTA AAATCTGTtt 002400 002401 tgaagcctgc aggacattag agggtgatgt ccaatagata gagatgcaca tctgaagcta aggaggagca ctgagctggg 002480 002481 gtgtatgttt ggaggccgtc agcctgtaga gatggtactt tactcatgag aacagatacg aggagccagg gagagggggt 002560 002561 aggcgtgaga aaagcacagt gagataagga gagaactcct tgggagcacc accattagat gtggttagag gattccgatt 002640 002641 cccaagaaga ttgagaaaca atgttcacat ttaaaaggaa aCAGGAggct gggcactgtg gctcacgcct gtaatcccag 002720 002721 cactttggga ggccaaggca ggcagatcac ctgaggtcag aagttcgaga ccagcttggc caacatggtg aaaccccatc 002800 002801 tctactgaaa atacaaaaat tagccgggcg tggtggtggg cgcctgtaat cacagctact tgggaggctg aggcaggaga 002880 002881 atggcctgaa cctggaggca gaggttgcag tgagccgaga ttgcaccact gcattccagc ctgggcgata agagagagac 002960 002961 tccgtctcaa agaaaaccaa aaaacaaaaa aCACCACATT GCAATACCAC TACACACCCA TGAGAATACC Tactggaaat 003040 003041 ctcatacatt gctgatggaa gtgtgggttg gttgaatcac tttgaaaagc tggcaatatc tactaaagct gaagatttgt 003120 003121 atatcctatg gtcctgcagt ccaaccccgg gtgtatatcc aacagaatgc aaacaaatgt gcactaaagg acatgcaACT 003200 003201 AATGGAGCTA TATGtataaa attgccagta tttgccagtt gtctatttgc aaaaatggca atttcacatg gttaaacctg 003280 003281 aTtacaagaa tgctcatagc agcactattt gtattagcca aaacctCAAT GGCAGATTAT TGTGTATATA Ttgaataaac 003360 003361 gtttcaccca gtaacatggg taaatcccac aaatatgatg ttgaatgaaa gaagccacac agctatatat aaagtacaaa 003440 003441 aacaagccgg gtgcggtggc tcacgcctgt aatcctagca |
Predicted Small Protein
Name | NONHSAT052840_smProtein_740:871 |
Length | 44 |
Molecular weight | 4934.6324 |
Aromaticity | 0.0697674418605 |
Instability index | 75.4441860465 |
Isoelectric point | 6.11810302734 |
Runs | 6 |
Runs residual | 0.0177684870656 |
Runs probability | 0.038052758641 |
Amino acid sequence | MRTGRPARWLTPVIPALWEAEEGGLRGQEIETILDNTVKPRLY |
Secondary structure | LLLLLLLLLLLLLLHHHHHHHHLLLLLLEEEHHHHLLLLLLLL |
PRMN | - |
PiMo | - |