Difference between revisions of "NONHSAT001960"

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sequence = <dnaseq>TAGCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATATTGGCCAGGCTGTTCTCAACTCCTGACCTCGTGATCCGCCCACCTCAGCCTCCTAAAGTGCTGGGATTACAGCTGTGAGCCACCCTGCCCGGCCACTTTTGTATGATTTCTAATGTATTTGTAATTTACCTAACAAATTGCCTAATCTGCTATGTTAATGTATTTATGAATTAAAATAAATACGACTGCATGTTTGTGGTTCATTTTTGTGGAGGTGGCTGTGGTGACATCAGCCAAGAATCTGAATGGTACTGTTGAAGGAAACTAGCATGATAGCTTCAGTTCTAAAGGCCCTGAAACCTAGTCTCAGGTGGGTCCCCCTTGGGTTCACTTTATATTGGCAGTTTATTGGGAAAATGGATATTAGGTCCTGACCAATAGGACCGTAAGTCTGGGTTGAGTGCAAGATGAGTTAGACCGATTCTTTAGCTTCCTGCAGTGTAGTGGAGGAAAAATCGATGGTAGCAACGGGAGGTTGTATCCCTAGCTGATGAGTTGTATGAGCCTCTACTACCTGGCGCACCTCCGCCTGAAGATTGCCAGAATTGCTTGCCTCATGACGTGAGTCACAATGGAAACTTTGTCAAGCCCCCTGCACTGGCTGCCAACATAAATGTTCAGTACCCTGAAGGATGGGACTGAAGGGGGATCATCTAGAAGGTAAAGTTACCTACTGGCATAGGGGAGGTGGGACAGCCGTTAAGCCATTTGGAACTTGATGGAGACAGGTTTGAGGGAGGTGGGTGAGATTGGAGTTTGGTGGACTGTAGAGCTTGCTTGCCAAGGTGTTGAGGTCAGGGTTGGTTTGAGAATGGAAGCTAGTTACTAGCTATGATTGTGGGGGAACACAGCTTGATTTTTCTTACAAGCTAAGAGGAGTGAGGCAGTGTTTAAGAGGGCATGTTAAATGCAGCCAGGCTTGGTGGCTCACACCCGTAATCCCAGCACTTAGGCTAAGGCAGGCGGATCACAACATCTAGAGATCCTGGCCAACGCGGTGAAACCCTGTCTGTACTAAAAATACAAAATAACTGGGCATGGTGGTGTGCACCTGTGGGAGGCTGAGGCAGAATTGCTGGAACCCGGGAGATGGAGGTTGTACTGAGCTGAGACCTTGCCACTGCGCTCCAGCCTGGTGACAGAGTTAAGTCTCAAAAAAAAGGCATCTTCCTAAAGCAATTGTATTTGTGCTTACCTGTGCCAGGCACTGTTCTAGGTAAGCACTAAGTGGGCTTTAATACAGCATATTCCAATGGGGAATCCCAGGAACCAAAAGACTAATTGTCCAAGTCCACAACTAGAAGTGGCACCTCTGCAGAAACAAGCATCAAATTCCCTGCTCAGGAAGAAGCCAGATGAGTCAGCCCCATTCGTCTGTATGCCCAGTCCCATCCGTGTCCTGCTGTAACTACATAGATCTCACCT</dnaseq>|
 
sequence = <dnaseq>TAGCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATATTGGCCAGGCTGTTCTCAACTCCTGACCTCGTGATCCGCCCACCTCAGCCTCCTAAAGTGCTGGGATTACAGCTGTGAGCCACCCTGCCCGGCCACTTTTGTATGATTTCTAATGTATTTGTAATTTACCTAACAAATTGCCTAATCTGCTATGTTAATGTATTTATGAATTAAAATAAATACGACTGCATGTTTGTGGTTCATTTTTGTGGAGGTGGCTGTGGTGACATCAGCCAAGAATCTGAATGGTACTGTTGAAGGAAACTAGCATGATAGCTTCAGTTCTAAAGGCCCTGAAACCTAGTCTCAGGTGGGTCCCCCTTGGGTTCACTTTATATTGGCAGTTTATTGGGAAAATGGATATTAGGTCCTGACCAATAGGACCGTAAGTCTGGGTTGAGTGCAAGATGAGTTAGACCGATTCTTTAGCTTCCTGCAGTGTAGTGGAGGAAAAATCGATGGTAGCAACGGGAGGTTGTATCCCTAGCTGATGAGTTGTATGAGCCTCTACTACCTGGCGCACCTCCGCCTGAAGATTGCCAGAATTGCTTGCCTCATGACGTGAGTCACAATGGAAACTTTGTCAAGCCCCCTGCACTGGCTGCCAACATAAATGTTCAGTACCCTGAAGGATGGGACTGAAGGGGGATCATCTAGAAGGTAAAGTTACCTACTGGCATAGGGGAGGTGGGACAGCCGTTAAGCCATTTGGAACTTGATGGAGACAGGTTTGAGGGAGGTGGGTGAGATTGGAGTTTGGTGGACTGTAGAGCTTGCTTGCCAAGGTGTTGAGGTCAGGGTTGGTTTGAGAATGGAAGCTAGTTACTAGCTATGATTGTGGGGGAACACAGCTTGATTTTTCTTACAAGCTAAGAGGAGTGAGGCAGTGTTTAAGAGGGCATGTTAAATGCAGCCAGGCTTGGTGGCTCACACCCGTAATCCCAGCACTTAGGCTAAGGCAGGCGGATCACAACATCTAGAGATCCTGGCCAACGCGGTGAAACCCTGTCTGTACTAAAAATACAAAATAACTGGGCATGGTGGTGTGCACCTGTGGGAGGCTGAGGCAGAATTGCTGGAACCCGGGAGATGGAGGTTGTACTGAGCTGAGACCTTGCCACTGCGCTCCAGCCTGGTGACAGAGTTAAGTCTCAAAAAAAAGGCATCTTCCTAAAGCAATTGTATTTGTGCTTACCTGTGCCAGGCACTGTTCTAGGTAAGCACTAAGTGGGCTTTAATACAGCATATTCCAATGGGGAATCCCAGGAACCAAAAGACTAATTGTCCAAGTCCACAACTAGAAGTGGCACCTCTGCAGAAACAAGCATCAAATTCCCTGCTCAGGAAGAAGCCAGATGAGTCAGCCCCATTCGTCTGTATGCCCAGTCCCATCCGTGTCCTGCTGTAACTACATAGATCTCACCT</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG000835]]
+
[[Category:Intergenic]][[Category:NONHSAG000835]][[Category:Transcripts]]

Latest revision as of 19:19, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT001960

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1480 nt

Genomic location

chr1+:28835902..28837381

Exon number

1

Exons

28835902..28837381

Genome context

Sequence
000001 TAGCACCACA CCTGGCTAAT TTTTGTATTT TTAGTAGAGA TGAGGTTTCA CCATATTGGC CAGGCTGTTC TCAACTCCTG 000080
000081 ACCTCGTGAT CCGCCCACCT CAGCCTCCTA AAGTGCTGGG ATTACAGCTG TGAGCCACCC TGCCCGGCCA CTTTTGTATG 000160
000161 ATTTCTAATG TATTTGTAAT TTACCTAACA AATTGCCTAA TCTGCTATGT TAATGTATTT ATGAATTAAA ATAAATACGA 000240
000241 CTGCATGTTT GTGGTTCATT TTTGTGGAGG TGGCTGTGGT GACATCAGCC AAGAATCTGA ATGGTACTGT TGAAGGAAAC 000320
000321 TAGCATGATA GCTTCAGTTC TAAAGGCCCT GAAACCTAGT CTCAGGTGGG TCCCCCTTGG GTTCACTTTA TATTGGCAGT 000400
000401 TTATTGGGAA AATGGATATT AGGTCCTGAC CAATAGGACC GTAAGTCTGG GTTGAGTGCA AGATGAGTTA GACCGATTCT 000480
000481 TTAGCTTCCT GCAGTGTAGT GGAGGAAAAA TCGATGGTAG CAACGGGAGG TTGTATCCCT AGCTGATGAG TTGTATGAGC 000560
000561 CTCTACTACC TGGCGCACCT CCGCCTGAAG ATTGCCAGAA TTGCTTGCCT CATGACGTGA GTCACAATGG AAACTTTGTC 000640
000641 AAGCCCCCTG CACTGGCTGC CAACATAAAT GTTCAGTACC CTGAAGGATG GGACTGAAGG GGGATCATCT AGAAGGTAAA 000720
000721 GTTACCTACT GGCATAGGGG AGGTGGGACA GCCGTTAAGC CATTTGGAAC TTGATGGAGA CAGGTTTGAG GGAGGTGGGT 000800
000801 GAGATTGGAG TTTGGTGGAC TGTAGAGCTT GCTTGCCAAG GTGTTGAGGT CAGGGTTGGT TTGAGAATGG AAGCTAGTTA 000880
000881 CTAGCTATGA TTGTGGGGGA ACACAGCTTG ATTTTTCTTA CAAGCTAAGA GGAGTGAGGC AGTGTTTAAG AGGGCATGTT 000960
000961 AAATGCAGCC AGGCTTGGTG GCTCACACCC GTAATCCCAG CACTTAGGCT AAGGCAGGCG GATCACAACA TCTAGAGATC 001040
001041 CTGGCCAACG CGGTGAAACC CTGTCTGTAC TAAAAATACA AAATAACTGG GCATGGTGGT GTGCACCTGT GGGAGGCTGA 001120
001121 GGCAGAATTG CTGGAACCCG GGAGATGGAG GTTGTACTGA GCTGAGACCT TGCCACTGCG CTCCAGCCTG GTGACAGAGT 001200
001201 TAAGTCTCAA AAAAAAGGCA TCTTCCTAAA GCAATTGTAT TTGTGCTTAC CTGTGCCAGG CACTGTTCTA GGTAAGCACT 001280
001281 AAGTGGGCTT TAATACAGCA TATTCCAATG GGGAATCCCA GGAACCAAAA GACTAATTGT CCAAGTCCAC AACTAGAAGT 001360
001361 GGCACCTCTG CAGAAACAAG CATCAAATTC CCTGCTCAGG AAGAAGCCAG ATGAGTCAGC CCCATTCGTC TGTATGCCCA 001440
001441 GTCCCATCCG TGTCCTGCTG TAACTACATA GATCTCACCT
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Predicted Small Protein

Name NONHSAT001960_smProtein_1307:1462
Length 52
Molecular weight 5630.549
Aromaticity 0.0196078431373
Instability index 77.8235294118
Isoelectric point 9.69427490234
Runs 9
Runs residual 0.0222286934576
Runs probability 0.0374688413904
Amino acid sequence MGNPRNQKTNCPSPQLEVAPLQKQASNSLLRKKPDESAPFVCMPSPIRVLL
Secondary structure LLLLLLLLLLLLLLLLLLLLHHHHHLHHHHLLLLLLLLLEEELLLLEEEEL
PRMN -
PiMo -