Difference between revisions of "NONHSAT099038"

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sequence = <dnaseq>CCATAGAATGTGAATTTCAGAGGCACATTAAGCCTAGTGAAAAGCTCCTTGGATTTCAGTTGTACACATGATTTCATCTTGTCACCTGGAGTATGAACTTCAAGCAAATAGAATTCTATTTCAGACTTATGGATTCAGAAGTCAAACTGAAAAGGAGTTTGGAAAAATGTTTAAAATTACAGGCTCAAAAACAAGCTTTCCCAAGATTACCAACTTTGTCACTCTTCTGGTTTTCTACTACTGTTCCATCCTTATCTATCACTCTTTTATTCTTTGATACTTTTACATTCAGCCACCTTCTTTGCTTGTTATAGATCTAGCTGCTGCTTTTCACATATGCCATGGTATTACTTATTATTTAATGGGTCCTAAAATAACTTTAAAGAAAACCACGTGTCTTATTA</dnaseq>|
 
sequence = <dnaseq>CCATAGAATGTGAATTTCAGAGGCACATTAAGCCTAGTGAAAAGCTCCTTGGATTTCAGTTGTACACATGATTTCATCTTGTCACCTGGAGTATGAACTTCAAGCAAATAGAATTCTATTTCAGACTTATGGATTCAGAAGTCAAACTGAAAAGGAGTTTGGAAAAATGTTTAAAATTACAGGCTCAAAAACAAGCTTTCCCAAGATTACCAACTTTGTCACTCTTCTGGTTTTCTACTACTGTTCCATCCTTATCTATCACTCTTTTATTCTTTGATACTTTTACATTCAGCCACCTTCTTTGCTTGTTATAGATCTAGCTGCTGCTTTTCACATATGCCATGGTATTACTTATTATTTAATGGGTCCTAAAATAACTTTAAAGAAAACCACGTGTCTTATTA</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG039235]]
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[[Category:Sense]][[Category:NONHSAG039235]][[Category:Transcripts]]

Revision as of 10:32, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT099038

Source

NONCODE4.0

Same with

,

Classification

sense

Length

404 nt

Genomic location

chr4-:162416288..162421226

Exon number

2

Exons

162416288..162416632,162421168..162421226

Genome context

Sequence
000001 CCATAGAATG TGAATTTCAG AGGCACATTA AGCCTAGTGA AAAGCTCCTT GGATTTCAGT TGTACACATG ATTTCATCTT 000080
000081 GTCACCTGGA GTATGAACTT CAAGCAAATA GAATTCTATT TCAGACTTAT GGATTCAGAA GTCAAACTGA AAAGGAGTTT 000160
000161 GGAAAAATGT TTAAAATTAC AGGCTCAAAA ACAAGCTTTC CCAAGATTAC CAACTTTGTC ACTCTTCTGG TTTTCTACTA 000240
000241 CTGTTCCATC CTTATCTATC ACTCTTTTAT TCTTTGATAC TTTTACATTC AGCCACCTTC TTTGCTTGTT ATAGATCTAG 000320
000321 CTGCTGCTTT TCACATATGC CATGGTATTA CTTATTATTT AATGGGTCCT AAAATAACTT TAAAGAAAAC CACGTGTCTT 000400
000401 ATTA
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Predicted Small Protein

Name NONHSAT099038_smProtein_92:313
Length 74
Molecular weight 8698.2877
Aromaticity 0.164383561644
Instability index 55.6973972603
Isoelectric point 9.44464111328
Runs 11
Runs residual 0.00653999116217
Runs probability 0.03822003822
Amino acid sequence MNFKQIEFYFRLMDSEVKLKRSLEKCLKLQAQKQAFPRLPTLSLFWFSTTVPSLSITLLF
FDTFTFSHLLCLL
Secondary structure LLHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHLLLLLLLEEEELLLLLLHHHHLHHH
HHHHHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH
HHHHHHLLLLLLL
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