Difference between revisions of "NONHSAT026075"

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sequence = <dnaseq>GCCCACTCCTCAGAAGCCCAGCACAGCTCCCAGTGTCTCCTAGCACgtagacccagtgtaatcacaagcatccttgtaagtggcaaagaggcagaggagacagcgccagagaggcagctgcatgagaaggatcaagatgttgctgactttgaagttggaagaagaaggccatgagcctcagtatgtgggcggcttctagaagctggaaggggcaaggagatggatttgacccttcagcctccaggggcagctgtacctgccatcactgattgtagcctggtgaggcctgttttagacttctgacctgtagagctgtaacataatacatttgggttgttttcaaccactaagtttgtggtaatttgttgtagcagctgtagaaaatgaatacatatgaatcctctggcatttgtttgagatttgctctatggcctagtatgtggttgtaaatgttccatctgtgcctgaaaaaatgtatattTCTAATTCAGTAGTCTCTGCTTTTTTTTTTTATTTTGTACCCCATCAATAAAATGATTTTCAG</dnaseq>|
 
sequence = <dnaseq>GCCCACTCCTCAGAAGCCCAGCACAGCTCCCAGTGTCTCCTAGCACgtagacccagtgtaatcacaagcatccttgtaagtggcaaagaggcagaggagacagcgccagagaggcagctgcatgagaaggatcaagatgttgctgactttgaagttggaagaagaaggccatgagcctcagtatgtgggcggcttctagaagctggaaggggcaaggagatggatttgacccttcagcctccaggggcagctgtacctgccatcactgattgtagcctggtgaggcctgttttagacttctgacctgtagagctgtaacataatacatttgggttgttttcaaccactaagtttgtggtaatttgttgtagcagctgtagaaaatgaatacatatgaatcctctggcatttgtttgagatttgctctatggcctagtatgtggttgtaaatgttccatctgtgcctgaaaaaatgtatattTCTAATTCAGTAGTCTCTGCTTTTTTTTTTTATTTTGTACCCCATCAATAAAATGATTTTCAG</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG010301]]
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[[Category:Intergenic]][[Category:NONHSAG010301]][[Category:Transcripts]]

Latest revision as of 20:51, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT026075

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

544 nt

Genomic location

chr12-:6548345..6550554

Exon number

2

Exons

6548345..6548842,6550509..6550554

Genome context

Sequence
000001 GCCCACTCCT CAGAAGCCCA GCACAGCTCC CAGTGTCTCC TAGCACgtag acccagtgta atcacaagca tccttgtaag 000080
000081 tggcaaagag gcagaggaga cagcgccaga gaggcagctg catgagaagg atcaagatgt tgctgacttt gaagttggaa 000160
000161 gaagaaggcc atgagcctca gtatgtgggc ggcttctaga agctggaagg ggcaaggaga tggatttgac ccttcagcct 000240
000241 ccaggggcag ctgtacctgc catcactgat tgtagcctgg tgaggcctgt tttagacttc tgacctgtag agctgtaaca 000320
000321 taatacattt gggttgtttt caaccactaa gtttgtggta atttgttgta gcagctgtag aaaatgaata catatgaatc 000400
000401 ctctggcatt tgtttgagat ttgctctatg gcctagtatg tggttgtaaa tgttccatct gtgcctgaaa aaatgtatat 000480
000481 tTCTAATTCA GTAGTCTCTG CTTTTTTTTT TTATTTTGTA CCCCATCAAT AAAATGATTT TCAG
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Predicted Small Protein

Name NONHSAT026075_smProtein_170:268
Length 33
Molecular weight 3441.7697
Aromaticity 0.09375
Instability index 79.621875
Isoelectric point 7.86859130859
Runs 5
Runs residual 0.0353954081633
Runs probability 0.0231937820173
Amino acid sequence MSLSMWAASRSWKGQGDGFDPSASRGSCTCHH
Secondary structure LLLLHHHHHHHHLLLLLLLLLLLLLLLEELLL
PRMN -
PiMo -