Difference between revisions of "NONHSAT099694"

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sequence = <dnaseq>aaacccagggccctggtggtgtaggcaccccagggaatatcctggtctgccggttgcaaagaccgtgggaaaagcgtagtatctgggccgaatgcaccgtccctcagggcacagtccctcatggcttcccttggctggcggagggacttctctgaccccttgcgcttcctggatgaggcaacaccccaccctgctttggcttgccctccatgtgctgcacgcactgtctaaccagtctcagtgagatgagccaggtacctcagttggaaatgcagaaatcacccaccttctgcattgatctcgctgggaactgcagactgaagcggttcctatttggccaccttgccagccCATCTCGAACATCATCTAAAAGGACTGGACCTACATCTGCAGTTAACTGCACAATGGAAGAAACGGCCTCTCCTGGGCAGCCTCATGGATGGGGTGAAGAGACAAAGCTTGGGAGTGTAGCATGTTGAGCACATCTGCTCagaggtaacatttaagcaTTTAGGTTGTCTCCAAGCATAAAAATGGAAATACTGATCCTGTGACAACACAGCCTGAATTTTCTGCTTTGCAGATGCCAGATTTATTTTTAAATGGTGTGAATCAAATCTGTGCTGAGAGGCCAACTTCAAAATATAAAAGAAAAATTGGCAATGGGAGGATTGTGCTGGTTTGGCTGAAATGAAGTGCTCTACGGCATTTCATTCTAGTGGAGCGTCTGACTGTGAAAATCCTTCCAATTGTAATTTTCTTTGGCTTGTCAAAAGAGGATTATGAACTAAAGTCAGTGTTGCAGGAAATGTCACCTGTCCTTTGAAAGAAAATAATAAATCAAAATGGCTTTTGTTCATCATGTTTAAAATGAAAAAAAAAAAAAAGTTGATCCACTTGGAGTCTTCTCTCATTTCTTGACAAGGCAGTTAAATAAATAAAACGGAATTTTTTGTAATTGTTACTTCTTGCTCATCTCAAAAGGGGAAAAGGGAAATCTTCATTCAATACATATTCATACAGAGAAAATAGAAGAGCAGAGACAGAGACAGAAAGAGAAATGAGATGAAGAGTGAAACAAGACCCTGGTAGAGTTCCTCAAGTCAGATGTTAAGAAAGGTATCTTTAAATTATAATTTGTTTCTTTGATAGATACTATATTACAAATTCAAAA</dnaseq>|
 
sequence = <dnaseq>aaacccagggccctggtggtgtaggcaccccagggaatatcctggtctgccggttgcaaagaccgtgggaaaagcgtagtatctgggccgaatgcaccgtccctcagggcacagtccctcatggcttcccttggctggcggagggacttctctgaccccttgcgcttcctggatgaggcaacaccccaccctgctttggcttgccctccatgtgctgcacgcactgtctaaccagtctcagtgagatgagccaggtacctcagttggaaatgcagaaatcacccaccttctgcattgatctcgctgggaactgcagactgaagcggttcctatttggccaccttgccagccCATCTCGAACATCATCTAAAAGGACTGGACCTACATCTGCAGTTAACTGCACAATGGAAGAAACGGCCTCTCCTGGGCAGCCTCATGGATGGGGTGAAGAGACAAAGCTTGGGAGTGTAGCATGTTGAGCACATCTGCTCagaggtaacatttaagcaTTTAGGTTGTCTCCAAGCATAAAAATGGAAATACTGATCCTGTGACAACACAGCCTGAATTTTCTGCTTTGCAGATGCCAGATTTATTTTTAAATGGTGTGAATCAAATCTGTGCTGAGAGGCCAACTTCAAAATATAAAAGAAAAATTGGCAATGGGAGGATTGTGCTGGTTTGGCTGAAATGAAGTGCTCTACGGCATTTCATTCTAGTGGAGCGTCTGACTGTGAAAATCCTTCCAATTGTAATTTTCTTTGGCTTGTCAAAAGAGGATTATGAACTAAAGTCAGTGTTGCAGGAAATGTCACCTGTCCTTTGAAAGAAAATAATAAATCAAAATGGCTTTTGTTCATCATGTTTAAAATGAAAAAAAAAAAAAAGTTGATCCACTTGGAGTCTTCTCTCATTTCTTGACAAGGCAGTTAAATAAATAAAACGGAATTTTTTGTAATTGTTACTTCTTGCTCATCTCAAAAGGGGAAAAGGGAAATCTTCATTCAATACATATTCATACAGAGAAAATAGAAGAGCAGAGACAGAGACAGAAAGAGAAATGAGATGAAGAGTGAAACAAGACCCTGGTAGAGTTCCTCAAGTCAGATGTTAAGAAAGGTATCTTTAAATTATAATTTGTTTCTTTGATAGATACTATATTACAAATTCAAAA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG039563]]
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[[Category:Intergenic]][[Category:NONHSAG039563]][[Category:Transcripts]]

Latest revision as of 01:12, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT099694

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1174 nt

Genomic location

chr4+:188329695..188337128

Exon number

3

Exons

188329695..188330053,188334716..188334865,188336464..188337128

Genome context

Sequence
000001 aaacccaggg ccctggtggt gtaggcaccc cagggaatat cctggtctgc cggttgcaaa gaccgtggga aaagcgtagt 000080
000081 atctgggccg aatgcaccgt ccctcagggc acagtccctc atggcttccc ttggctggcg gagggacttc tctgacccct 000160
000161 tgcgcttcct ggatgaggca acaccccacc ctgctttggc ttgccctcca tgtgctgcac gcactgtcta accagtctca 000240
000241 gtgagatgag ccaggtacct cagttggaaa tgcagaaatc acccaccttc tgcattgatc tcgctgggaa ctgcagactg 000320
000321 aagcggttcc tatttggcca ccttgccagc cCATCTCGAA CATCATCTAA AAGGACTGGA CCTACATCTG CAGTTAACTG 000400
000401 CACAATGGAA GAAACGGCCT CTCCTGGGCA GCCTCATGGA TGGGGTGAAG AGACAAAGCT TGGGAGTGTA GCATGTTGAG 000480
000481 CACATCTGCT Cagaggtaac atttaagcaT TTAGGTTGTC TCCAAGCATA AAAATGGAAA TACTGATCCT GTGACAACAC 000560
000561 AGCCTGAATT TTCTGCTTTG CAGATGCCAG ATTTATTTTT AAATGGTGTG AATCAAATCT GTGCTGAGAG GCCAACTTCA 000640
000641 AAATATAAAA GAAAAATTGG CAATGGGAGG ATTGTGCTGG TTTGGCTGAA ATGAAGTGCT CTACGGCATT TCATTCTAGT 000720
000721 GGAGCGTCTG ACTGTGAAAA TCCTTCCAAT TGTAATTTTC TTTGGCTTGT CAAAAGAGGA TTATGAACTA AAGTCAGTGT 000800
000801 TGCAGGAAAT GTCACCTGTC CTTTGAAAGA AAATAATAAA TCAAAATGGC TTTTGTTCAT CATGTTTAAA ATGAAAAAAA 000880
000881 AAAAAAAGTT GATCCACTTG GAGTCTTCTC TCATTTCTTG ACAAGGCAGT TAAATAAATA AAACGGAATT TTTTGTAATT 000960
000961 GTTACTTCTT GCTCATCTCA AAAGGGGAAA AGGGAAATCT TCATTCAATA CATATTCATA CAGAGAAAAT AGAAGAGCAG 001040
001041 AGACAGAGAC AGAAAGAGAA ATGAGATGAA GAGTGAAACA AGACCCTGGT AGAGTTCCTC AAGTCAGATG TTAAGAAAGG 001120
001121 TATCTTTAAA TTATAATTTG TTTCTTTGAT AGATACTATA TTACAAATTC AAAA
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Predicted Small Protein

Name NONHSAT099694_smProtein_209:478
Length 90
Molecular weight 9592.9108
Aromaticity 0.0449438202247
Instability index 69.4651685393
Isoelectric point 7.59283447266
Runs 17
Runs residual 0.0478078871998
Runs probability 0.0362282697923
Amino acid sequence MCCTHCLTSLSEMSQVPQLEMQKSPTFCIDLAGNCRLKRFLFGHLASPSRTSSKRTGPTS
AVNCTMEETASPGQPHGWGEETKLGSVAC
Secondary structure LEEEELLLLHHHLLLLLLLLLLLLLEEEEELLLLLLHHHHHHHLLLLLLLLLLLLLLLLL
LEELLEEEELLLLLLLLLLLEEEELEELL
PRMN -
PiMo -