Difference between revisions of "NONHSAT026831"
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sequence = <dnaseq>GCTTAACTGGTACATCTGGACTCTGATGAGTGAGAAGTCCAAGCAAATAGAAAAGCCACAGCCAAACGATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAGTGTGATTGCACTTTCTATTGTTTTGTCAGAATTTCCTGAAAAGATACAAAGGCCCTTCTGACCATTGGATTGGCCTTAGAAGAGAATCATCCCATCGCATTTGGAAATGGACAGACAACATGGAATATAATAACATTTTTCACACATTTACAAAACAATTTGGGAGGAGGCTGGAAATCATCTTGACTGAAGACCACCAATGGCAGCAGTTCATTTGGGCTTGCTATCAGAGGAAGTGGAGAATGTGCCTTCCTGAATGACAATGGAGTCAACAGTGGCAGAATCTACATGAACAGAAAATGGATTTGTAGCAAGCCAAACAATTATGTCTACAGTTGCCAGTTATgtccccactgggatactacctagtagagctgtgagaagagggccaccatcctccagactccagaatggtggaatcagcagcagcttccaccatgcccctggaaaaactgcaagtaacagacctgcacatgtatcccctacatctaaaataaaagttggaaaaaaTGgaactttgatgttaagatgcactgatacaaaacttaaattttggtctcctacattaaaacaatatgagtctcttaaaatattgatttgttcttagtaagattacaagaggctttgatttttaattctgcaatgtttccttaacagccattctgaattacaaactaattcctatttctgccacattccttcctgagaactgtctagtcctggtttGGGAtttatcttaaaggtctagaaaggcaacattttacttcagcaaaacttgattctatattgttgttttttcttaatgtgtcaaaattgttttgttactaggatttcctatgttgttattaaatgtattcccctgatcaaggtcactggcctagaaaacaaagattctgtgttttaccaagataattcccagtgcttcatggtgtctttattaggctttgactgcttagggaaactgagccttaaaagggtaaaagtttttccatccatgtaactttctgaggtctttaggttgtcactctgattaaatgagtagtattcttagcagtgacttattatctgttgaaggaagtattttaagctttttgacatctttggcaggtttctctagaatccaaatcctaaattaagccttttggcctaaaaatgactgggatttttccaggtggaccccctagatatgctcctccaaaggcttgtctttcttgtagagttattaaatgattaggcttatttggcaaatactgctagaagcattgtcaaataagaaatggtgttttacctttctttaagctgtgtttgtgtaagttcatcatttatagaaatgtgaaattttatgagattcctaagatactgacatgctgagatacctgtaataattgcaatttttatgttggatgattgtatgccacagaagcacttaaatttcctggttaattggtaacgttaatcagatctttacctatggctgttctgggtttttgtcattcacagttattattttaatttcttctttggaagcgttcgcaatcagctatagtccaaaattgctaattaagatcaagcaaaacaaaattaattacgtaaaattaatttataaggatgtttttatgacgtaaatgttttattttccagagccaaggaaattttctgtcacaagctatctaccgtttgcaataatttgataaataatcctttgtgaacaa</dnaseq>| | sequence = <dnaseq>GCTTAACTGGTACATCTGGACTCTGATGAGTGAGAAGTCCAAGCAAATAGAAAAGCCACAGCCAAACGATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAGTGTGATTGCACTTTCTATTGTTTTGTCAGAATTTCCTGAAAAGATACAAAGGCCCTTCTGACCATTGGATTGGCCTTAGAAGAGAATCATCCCATCGCATTTGGAAATGGACAGACAACATGGAATATAATAACATTTTTCACACATTTACAAAACAATTTGGGAGGAGGCTGGAAATCATCTTGACTGAAGACCACCAATGGCAGCAGTTCATTTGGGCTTGCTATCAGAGGAAGTGGAGAATGTGCCTTCCTGAATGACAATGGAGTCAACAGTGGCAGAATCTACATGAACAGAAAATGGATTTGTAGCAAGCCAAACAATTATGTCTACAGTTGCCAGTTATgtccccactgggatactacctagtagagctgtgagaagagggccaccatcctccagactccagaatggtggaatcagcagcagcttccaccatgcccctggaaaaactgcaagtaacagacctgcacatgtatcccctacatctaaaataaaagttggaaaaaaTGgaactttgatgttaagatgcactgatacaaaacttaaattttggtctcctacattaaaacaatatgagtctcttaaaatattgatttgttcttagtaagattacaagaggctttgatttttaattctgcaatgtttccttaacagccattctgaattacaaactaattcctatttctgccacattccttcctgagaactgtctagtcctggtttGGGAtttatcttaaaggtctagaaaggcaacattttacttcagcaaaacttgattctatattgttgttttttcttaatgtgtcaaaattgttttgttactaggatttcctatgttgttattaaatgtattcccctgatcaaggtcactggcctagaaaacaaagattctgtgttttaccaagataattcccagtgcttcatggtgtctttattaggctttgactgcttagggaaactgagccttaaaagggtaaaagtttttccatccatgtaactttctgaggtctttaggttgtcactctgattaaatgagtagtattcttagcagtgacttattatctgttgaaggaagtattttaagctttttgacatctttggcaggtttctctagaatccaaatcctaaattaagccttttggcctaaaaatgactgggatttttccaggtggaccccctagatatgctcctccaaaggcttgtctttcttgtagagttattaaatgattaggcttatttggcaaatactgctagaagcattgtcaaataagaaatggtgttttacctttctttaagctgtgtttgtgtaagttcatcatttatagaaatgtgaaattttatgagattcctaagatactgacatgctgagatacctgtaataattgcaatttttatgttggatgattgtatgccacagaagcacttaaatttcctggttaattggtaacgttaatcagatctttacctatggctgttctgggtttttgtcattcacagttattattttaatttcttctttggaagcgttcgcaatcagctatagtccaaaattgctaattaagatcaagcaaaacaaaattaattacgtaaaattaatttataaggatgtttttatgacgtaaatgttttattttccagagccaaggaaattttctgtcacaagctatctaccgtttgcaataatttgataaataatcctttgtgaacaa</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG010453]] | + | [[Category:Intergenic]][[Category:NONHSAG010453]][[Category:Transcripts]] |
Latest revision as of 20:53, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026831 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1877 nt |
Genomic location |
chr12+:9769880..9811010 |
Exon number |
5 |
Exons |
9769880..9769947,9806279..9806404,9808469..9808575,9809164..9809245,9809517..9811010 |
Genome context |
|
Sequence |
000001 GCTTAACTGG TACATCTGGA CTCTGATGAG TGAGAAGTCC AAGCAAATAG AAAAGCCACA GCCAAACGAT AAAACTCTGC 000080
000081 AAAGACAATG TCTAGCACTT ATATCTCCAG TAACTCCTGT CAAGGTTTAT TGTTGCTTGT TCATCATTGC AGTCCTGACT 000160 000161 ACAAGTGTGA TTGCACTTTC TATTGTTTTG TCAGAATTTC CTGAAAAGAT ACAAAGGCCC TTCTGACCAT TGGATTGGCC 000240 000241 TTAGAAGAGA ATCATCCCAT CGCATTTGGA AATGGACAGA CAACATGGAA TATAATAACA TTTTTCACAC ATTTACAAAA 000320 000321 CAATTTGGGA GGAGGCTGGA AATCATCTTG ACTGAAGACC ACCAATGGCA GCAGTTCATT TGGGCTTGCT ATCAGAGGAA 000400 000401 GTGGAGAATG TGCCTTCCTG AATGACAATG GAGTCAACAG TGGCAGAATC TACATGAACA GAAAATGGAT TTGTAGCAAG 000480 000481 CCAAACAATT ATGTCTACAG TTGCCAGTTA Tgtccccact gggatactac ctagtagagc tgtgagaaga gggccaccat 000560 000561 cctccagact ccagaatggt ggaatcagca gcagcttcca ccatgcccct ggaaaaactg caagtaacag acctgcacat 000640 000641 gtatccccta catctaaaat aaaagttgga aaaaaTGgaa ctttgatgtt aagatgcact gatacaaaac ttaaattttg 000720 000721 gtctcctaca ttaaaacaat atgagtctct taaaatattg atttgttctt agtaagatta caagaggctt tgatttttaa 000800 000801 ttctgcaatg tttccttaac agccattctg aattacaaac taattcctat ttctgccaca ttccttcctg agaactgtct 000880 000881 agtcctggtt tGGGAtttat cttaaaggtc tagaaaggca acattttact tcagcaaaac ttgattctat attgttgttt 000960 000961 tttcttaatg tgtcaaaatt gttttgttac taggatttcc tatgttgtta ttaaatgtat tcccctgatc aaggtcactg 001040 001041 gcctagaaaa caaagattct gtgttttacc aagataattc ccagtgcttc atggtgtctt tattaggctt tgactgctta 001120 001121 gggaaactga gccttaaaag ggtaaaagtt tttccatcca tgtaactttc tgaggtcttt aggttgtcac tctgattaaa 001200 001201 tgagtagtat tcttagcagt gacttattat ctgttgaagg aagtatttta agctttttga catctttggc aggtttctct 001280 001281 agaatccaaa tcctaaatta agccttttgg cctaaaaatg actgggattt ttccaggtgg accccctaga tatgctcctc 001360 001361 caaaggcttg tctttcttgt agagttatta aatgattagg cttatttggc aaatactgct agaagcattg tcaaataaga 001440 001441 aatggtgttt tacctttctt taagctgtgt ttgtgtaagt tcatcattta tagaaatgtg aaattttatg agattcctaa 001520 001521 gatactgaca tgctgagata cctgtaataa ttgcaatttt tatgttggat gattgtatgc cacagaagca cttaaatttc 001600 001601 ctggttaatt ggtaacgtta atcagatctt tacctatggc tgttctgggt ttttgtcatt cacagttatt attttaattt 001680 001681 cttctttgga agcgttcgca atcagctata gtccaaaatt gctaattaag atcaagcaaa acaaaattaa ttacgtaaaa 001760 001761 ttaatttata aggatgtttt tatgacgtaa atgttttatt ttccagagcc aaggaaattt tctgtcacaa gctatctacc 001840 001841 gtttgcaata atttgataaa taatcctttg tgaacaa |
Predicted Small Protein
Name | NONHSAT026831_smProtein_284:424 |
Length | 47 |
Molecular weight | 5936.7843 |
Aromaticity | 0.195652173913 |
Instability index | 74.0630434783 |
Isoelectric point | 7.83843994141 |
Runs | 7 |
Runs residual | 0.00918737060041 |
Runs probability | 0.0378277437101 |
Amino acid sequence | MEYNNIFHTFTKQFGRRLEIILTEDHQWQQFIWACYQRKWRMCLPE |
Secondary structure | LLLLLHHHHHHHHLLLEEEEEELLLHHHHHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |