Difference between revisions of "ENST00000521159.1"
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[[Category:Overlapping(AS)]] | [[Category:Overlapping(AS)]] | ||
− | [[Category:Antisense]][[Category:lnc-EVX1-10]][[Category:NONHSAG047182]] | + | [[Category:Antisense]][[Category:lnc-EVX1-10]][[Category:NONHSAG047182]][[Category:ENSG00000253552.3]] |
Revision as of 18:10, 15 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000521159.1 |
Source |
Gencode19 |
Same with |
lnc-EVX1-10:8,NONHSAT119678 |
Classification |
overlapping(AS),antisense |
Length |
800 nt |
Genomic location |
chr7+:27162167..27173921 |
Exon number |
4 |
Exons |
27162167..27162285,27163079..27163257,27163950..27164229,27173700..27173921 |
Genome context |
|
Sequence |
000001 GCAGCGCTTA CCTAGAAAGA TGTTTAAATT CTGAACCAGG AATTGTCTCC AACTCCAGGC GCTCAGGGAA TCGCCTTTTC 000080
000081 CGGTGTCCAG GCGCTCTGCA GACAAATAAA CAGCAGAAGC AAATGGTCAC CGAGCCGGCA GTCAGCTTTC TGGGAGTGGG 000160 000161 AGATGATGGG GAAAGAGGAA AGAATCGTCC GCTCGCCGGA CCCTGGCTTG GAGAAGTTCT GCGCTCCGCT GGGACTCTGC 000240 000241 GGGCCCTTTG CGTCTACAGA CCTATCCCTG CCCCGACTAC CCCTTCACTC AGACCCAGCC TTCCCCAGCG TGAATCAGAA 000320 000321 CATTACCAAC TGTCTGCGCA TCCGTCCCAC TTCATCACCA AAGCCAGGAT GTGACCGCAG AAAACCCAAG CCCGAACTCA 000400 000401 CGTTTCCCCG GACGCGGCGC GCTCCCTGGA CTCGCAGAAA CCCTGCGGAA AAGGCCCCAA GATCTGGTGA GGGCCTGCCA 000480 000481 GCTCCGTCCT CCCTGCCGAG GGCTCTCTCC TGCCTTCCTG AAGGAGTTAA AAGCCTTTGG AGATAAATCT GAGGGTGTGT 000560 000561 GTTTTTAAAA ATCAAATGAG CGAGAGTCCC CCAGACTGTT CTCTATCTGA TGCATGTCTC TAGAGCTGAA CAGTGGAATG 000640 000641 GCAGAATTTC AAAACGCCTG ATGGTGGCAT TTGAAGGCTT CCCCACCACC TACACTAGAC ACAAGATTTG AGAGGAACAA 000720 000721 CACTTTACCA GCCATTTGAC CAATTAATTC TTTGGGGATA ATTTTCTTGT AGTAGTTTAA AATAATGCAC ACAACGCAGG 000800 |
Predicted Small Protein
Name | ENST00000521159.1_smProtein_122:373 |
Length | 84 |
Molecular weight | 9077.3136 |
Aromaticity | 0.0602409638554 |
Instability index | 48.7156626506 |
Isoelectric point | 9.61431884766 |
Runs | 11 |
Runs residual | 0.00749665327979 |
Runs probability | 0.0486984310513 |
Amino acid sequence | MVTEPAVSFLGVGDDGERGKNRPLAGPWLGEVLRSAGTLRALCVYRPIPAPTTPSLRPSL PQRESEHYQLSAHPSHFITKARM |
Secondary structure | LLLLLLEEEEEELLLLLLLLLLLLLLLLHHHHHHHHLLEEEEEEELLLLLLLLLLLLLLL LLLLLLLLEELLLLLLLEEELLL |
PRMN | - |
PiMo | - |