Difference between revisions of "NONHSAT054926"
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sequence = <dnaseq>GGTGCTGCGAGGGCTACGTTCAGCGCACGCGCACGCACGCGCGACGTCACCCTCCCCACGAAGGGGGTAAAAAAGTCCCCCGCGTTCCCAGCTTGGGGTGGTTTGCGAACAGAGTGACCAGCCGTTTGGTAAAAGTTAAATAACGAACTTTCGTTAAAGGAGCTAGTCATCCAGGTCGGGTCTTGAAGGATGGTCGATTTCTCCAGGAATGAGGATCTTTGAAAGCAACTCGGCGCCTTCAAAGCACTTGGTGAAACCTAGCCTAAAGCGTTGTCCCACCATGCTCTGCGGCGATAACGGCCTTTGGCGGGAAAGAGTCTCGGAGGCGGGGCCAAAGGGGGACGGCCCGGGCGGTTGCTCCGGAAACCCGGGTATCTTCGTAGGGTGCGTCTAATCCAGAGCTGAGTTGCGGGTGATTGAACGGAGAGCTGGGGCGTTGGTTTGTCTTCCCGCCCCTGCTGCGAATAGACCGTGGCTGCTTAGACAGATGTGTCTAATTTAGCGAAACCGATTTAGATTCCTTAATCCTCTTCATTAAGTACCGTTCCGCCTTCTCGTCAGAACTTTGCATAGCTCGGGTCAGCACTCCTAGTGCTAGTCGCAGTGGGTCCGTATCCCGACCGGCAACGTGGTACCCGCCAACCAGAAGGGGTAACACCGTACCGCCTATGGGACCCACACCTTTTTATCTCTTGTTAGTCGCCTGTCCGTGGGACTAGCGCAGAATGCCTGCAGAATGAATCGTTTCTGTTGTTTCCTTTCAAAGAACGAGAAGGAAGAAAGGGTGCGTGTGTGCAGTCCTTTTTTCAAAAGTTTTCCCTAAAAGTTACTGATACACCAGGTTTTGAAAATACCGGTCCTCTCAGGTAATAAAATGGAGCAAAATGGATGTGAGAACCGTAACCACTAGATACCGCGGTTGCTATTCAGGACTGTGATCCTGTTTGCCTGCGGCATTGGGAGATAACATTTTACATTTtttttcgacgtctgaaatctggatttttatgtgaaatcctgggatttttaaacgtcgctaatgaattaaaaTTCAAATCAggctgggcgcggtggctcacgccagcactttgggaggccgaggcggttggatcacttgaggtcaggaattcgagaccagcctggccaacatggtgaaatcccgtctctactgaaaaaacaaaaaattagccgggcttggtggcaggcgcctgtaatccactctacgcgggaggctgaggcaggagaatcgctagaaccctggaggcggaggttgcagtgagctgagatggcgccattgcactgcagcctgggctacagagtgagactcctccaaaaaaaaaaaaaaGGAGGGGGAAACAACAACAAATTAAAATCAAACCCTGCAGTCATAAATTTGCCATAACAGATCTACACACTGAATTTAAGGGATAATTTTCTTCATGttatttatttacagtagtccctttccgcaaggatgtgaggcaacttacagagataccataaaacatgaaaactagatgaggctgggcgtggtggctcactcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagtcggagaccaacatgtcgaaacccgtatcttctaaaaatacaaaacattagctgggtatggtggcgcgtgcctgtaatcccagctactcggtagggtgagacaggacaatctcttgaacccttaggaggtggaggctgcagtgagcggaaatcacgccactgcactccagcctgggtgacagaacaagactccatctcacacacacacaaaaaaaatgctagagtaagaaatcagaggaatgggaaaatgaggggtggattaaatgaaatacgcataaattactatacaaaatgcctgcagtgaaagcccgttgaatttgttgagatagattgcaaattttactttagtcttcccagaagtcacggtaaagaagggtacaGAAGTATTGTGTATTCAAAATCCAAAGTGCCTTTGGGATAAAAGTAAATAGGTCATTCAGGAGAAGGACATGTTTTCTTAATTCTAAAAGCTGATGAAATATATTTTACAAATGTTTCTCGGTGACCCCAAAATACAAATTCAATTTGAAATGAGCAGGGATGCTTGGTCTTGTGGCCGTAGATCCTCGGTATATCTACAGATGACCTTTGGTAATCCTTGAGCTTTCTGTAATATTTTCGAaaattatatgcatgtgtgcatgtacaaaattatatgcatgtgtgtacttttttctgggaagaggatttggaattttaatcaacttcttaaaggagtccatagatcccaaaaggaaaaagaacttctgAAATTTGTCAAGGGAAGGATAGATTGCCTATTCTTCAGACCATCCTTTAAGtatatatatagatgtgtgtttgtgtgtgtgtgtgtatatatatatatatatatatatatattttttttttttttttgagacagagttgccctctgtcacccaggctggagtgcaatggcatgatctcagctcagtgcaacctctgcttccctggcctaagtcattcttgtgcctcagccttccgagtagctggaattacagacatgtgccacgatgcccagctaatttttgtatttttggtagctgggattacaggcatgagccaccacgtccagctaatttttgtatttttagtagagacggggtttcgtcatgttggccatgctggtctcgaactcctggcctcaagtgatcctccggccttggcctcccaaagtagtgggattacaggcatgagcccctgcacctggccGGCttttttttttttttttttttttttttttgagacagggtcttgctctttcactcaggctggaatgcagtggtgcaatcacagctcactgcagcctcgacctcctggacccaagcgattctcccacctcagtgtccttcgtagctgagactacaggtatgcatcaccacttcagactgatttttgtattttttgtagcgatggggtctcgccatgttgcccaggctgcttttgaactcctgaagtcaagcgatccttccatctcggcctcccaaagtggggggattacaggcatgagccattgtgcctggccAGAGCCTGATATGTTTTTAAATGAGAAGGTGACCAAAAAAGATACTATTTCAACAAATCTACTGTTTCTAGCATTGTTCCATTAAGTGAATGGCAGAAAAGAGGAGAGTTTTTAAAAACTTGCAGCCTGTTGATTCTTTCATTCAACAGTTATTTGCTGAACACATTTTCTTTCTGTTCTTTTATACATCAGTTTAAATTTATGCAGGCAAAGCTTCTGTTAATCATAAGTCAATGATAACTGAAGTGATAACTgaaatcagtagtttataattggatagttcattttaagaagggatgagacaatACACATAGGTACTTTTAATTTCAAGGTAATTTCATTCCAGAAAAATATAATTGAATTTGCtttttgtttgtttgtttgaggtggagtctcgctctgt</dnaseq>| | sequence = <dnaseq>GGTGCTGCGAGGGCTACGTTCAGCGCACGCGCACGCACGCGCGACGTCACCCTCCCCACGAAGGGGGTAAAAAAGTCCCCCGCGTTCCCAGCTTGGGGTGGTTTGCGAACAGAGTGACCAGCCGTTTGGTAAAAGTTAAATAACGAACTTTCGTTAAAGGAGCTAGTCATCCAGGTCGGGTCTTGAAGGATGGTCGATTTCTCCAGGAATGAGGATCTTTGAAAGCAACTCGGCGCCTTCAAAGCACTTGGTGAAACCTAGCCTAAAGCGTTGTCCCACCATGCTCTGCGGCGATAACGGCCTTTGGCGGGAAAGAGTCTCGGAGGCGGGGCCAAAGGGGGACGGCCCGGGCGGTTGCTCCGGAAACCCGGGTATCTTCGTAGGGTGCGTCTAATCCAGAGCTGAGTTGCGGGTGATTGAACGGAGAGCTGGGGCGTTGGTTTGTCTTCCCGCCCCTGCTGCGAATAGACCGTGGCTGCTTAGACAGATGTGTCTAATTTAGCGAAACCGATTTAGATTCCTTAATCCTCTTCATTAAGTACCGTTCCGCCTTCTCGTCAGAACTTTGCATAGCTCGGGTCAGCACTCCTAGTGCTAGTCGCAGTGGGTCCGTATCCCGACCGGCAACGTGGTACCCGCCAACCAGAAGGGGTAACACCGTACCGCCTATGGGACCCACACCTTTTTATCTCTTGTTAGTCGCCTGTCCGTGGGACTAGCGCAGAATGCCTGCAGAATGAATCGTTTCTGTTGTTTCCTTTCAAAGAACGAGAAGGAAGAAAGGGTGCGTGTGTGCAGTCCTTTTTTCAAAAGTTTTCCCTAAAAGTTACTGATACACCAGGTTTTGAAAATACCGGTCCTCTCAGGTAATAAAATGGAGCAAAATGGATGTGAGAACCGTAACCACTAGATACCGCGGTTGCTATTCAGGACTGTGATCCTGTTTGCCTGCGGCATTGGGAGATAACATTTTACATTTtttttcgacgtctgaaatctggatttttatgtgaaatcctgggatttttaaacgtcgctaatgaattaaaaTTCAAATCAggctgggcgcggtggctcacgccagcactttgggaggccgaggcggttggatcacttgaggtcaggaattcgagaccagcctggccaacatggtgaaatcccgtctctactgaaaaaacaaaaaattagccgggcttggtggcaggcgcctgtaatccactctacgcgggaggctgaggcaggagaatcgctagaaccctggaggcggaggttgcagtgagctgagatggcgccattgcactgcagcctgggctacagagtgagactcctccaaaaaaaaaaaaaaGGAGGGGGAAACAACAACAAATTAAAATCAAACCCTGCAGTCATAAATTTGCCATAACAGATCTACACACTGAATTTAAGGGATAATTTTCTTCATGttatttatttacagtagtccctttccgcaaggatgtgaggcaacttacagagataccataaaacatgaaaactagatgaggctgggcgtggtggctcactcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagtcggagaccaacatgtcgaaacccgtatcttctaaaaatacaaaacattagctgggtatggtggcgcgtgcctgtaatcccagctactcggtagggtgagacaggacaatctcttgaacccttaggaggtggaggctgcagtgagcggaaatcacgccactgcactccagcctgggtgacagaacaagactccatctcacacacacacaaaaaaaatgctagagtaagaaatcagaggaatgggaaaatgaggggtggattaaatgaaatacgcataaattactatacaaaatgcctgcagtgaaagcccgttgaatttgttgagatagattgcaaattttactttagtcttcccagaagtcacggtaaagaagggtacaGAAGTATTGTGTATTCAAAATCCAAAGTGCCTTTGGGATAAAAGTAAATAGGTCATTCAGGAGAAGGACATGTTTTCTTAATTCTAAAAGCTGATGAAATATATTTTACAAATGTTTCTCGGTGACCCCAAAATACAAATTCAATTTGAAATGAGCAGGGATGCTTGGTCTTGTGGCCGTAGATCCTCGGTATATCTACAGATGACCTTTGGTAATCCTTGAGCTTTCTGTAATATTTTCGAaaattatatgcatgtgtgcatgtacaaaattatatgcatgtgtgtacttttttctgggaagaggatttggaattttaatcaacttcttaaaggagtccatagatcccaaaaggaaaaagaacttctgAAATTTGTCAAGGGAAGGATAGATTGCCTATTCTTCAGACCATCCTTTAAGtatatatatagatgtgtgtttgtgtgtgtgtgtgtatatatatatatatatatatatatattttttttttttttttgagacagagttgccctctgtcacccaggctggagtgcaatggcatgatctcagctcagtgcaacctctgcttccctggcctaagtcattcttgtgcctcagccttccgagtagctggaattacagacatgtgccacgatgcccagctaatttttgtatttttggtagctgggattacaggcatgagccaccacgtccagctaatttttgtatttttagtagagacggggtttcgtcatgttggccatgctggtctcgaactcctggcctcaagtgatcctccggccttggcctcccaaagtagtgggattacaggcatgagcccctgcacctggccGGCttttttttttttttttttttttttttttgagacagggtcttgctctttcactcaggctggaatgcagtggtgcaatcacagctcactgcagcctcgacctcctggacccaagcgattctcccacctcagtgtccttcgtagctgagactacaggtatgcatcaccacttcagactgatttttgtattttttgtagcgatggggtctcgccatgttgcccaggctgcttttgaactcctgaagtcaagcgatccttccatctcggcctcccaaagtggggggattacaggcatgagccattgtgcctggccAGAGCCTGATATGTTTTTAAATGAGAAGGTGACCAAAAAAGATACTATTTCAACAAATCTACTGTTTCTAGCATTGTTCCATTAAGTGAATGGCAGAAAAGAGGAGAGTTTTTAAAAACTTGCAGCCTGTTGATTCTTTCATTCAACAGTTATTTGCTGAACACATTTTCTTTCTGTTCTTTTATACATCAGTTTAAATTTATGCAGGCAAAGCTTCTGTTAATCATAAGTCAATGATAACTGAAGTGATAACTgaaatcagtagtttataattggatagttcattttaagaagggatgagacaatACACATAGGTACTTTTAATTTCAAGGTAATTTCATTCCAGAAAAATATAATTGAATTTGCtttttgtttgtttgtttgaggtggagtctcgctctgt</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG022317]] | + | [[Category:Intergenic]][[Category:NONHSAG022317]][[Category:Transcripts]] |
Revision as of 10:33, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054926 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3526 nt |
Genomic location |
chr17+:56084709..56088234 |
Exon number |
1 |
Exons |
56084709..56088234 |
Genome context |
|
Sequence |
000001 GGTGCTGCGA GGGCTACGTT CAGCGCACGC GCACGCACGC GCGACGTCAC CCTCCCCACG AAGGGGGTAA AAAAGTCCCC 000080
000081 CGCGTTCCCA GCTTGGGGTG GTTTGCGAAC AGAGTGACCA GCCGTTTGGT AAAAGTTAAA TAACGAACTT TCGTTAAAGG 000160 000161 AGCTAGTCAT CCAGGTCGGG TCTTGAAGGA TGGTCGATTT CTCCAGGAAT GAGGATCTTT GAAAGCAACT CGGCGCCTTC 000240 000241 AAAGCACTTG GTGAAACCTA GCCTAAAGCG TTGTCCCACC ATGCTCTGCG GCGATAACGG CCTTTGGCGG GAAAGAGTCT 000320 000321 CGGAGGCGGG GCCAAAGGGG GACGGCCCGG GCGGTTGCTC CGGAAACCCG GGTATCTTCG TAGGGTGCGT CTAATCCAGA 000400 000401 GCTGAGTTGC GGGTGATTGA ACGGAGAGCT GGGGCGTTGG TTTGTCTTCC CGCCCCTGCT GCGAATAGAC CGTGGCTGCT 000480 000481 TAGACAGATG TGTCTAATTT AGCGAAACCG ATTTAGATTC CTTAATCCTC TTCATTAAGT ACCGTTCCGC CTTCTCGTCA 000560 000561 GAACTTTGCA TAGCTCGGGT CAGCACTCCT AGTGCTAGTC GCAGTGGGTC CGTATCCCGA CCGGCAACGT GGTACCCGCC 000640 000641 AACCAGAAGG GGTAACACCG TACCGCCTAT GGGACCCACA CCTTTTTATC TCTTGTTAGT CGCCTGTCCG TGGGACTAGC 000720 000721 GCAGAATGCC TGCAGAATGA ATCGTTTCTG TTGTTTCCTT TCAAAGAACG AGAAGGAAGA AAGGGTGCGT GTGTGCAGTC 000800 000801 CTTTTTTCAA AAGTTTTCCC TAAAAGTTAC TGATACACCA GGTTTTGAAA ATACCGGTCC TCTCAGGTAA TAAAATGGAG 000880 000881 CAAAATGGAT GTGAGAACCG TAACCACTAG ATACCGCGGT TGCTATTCAG GACTGTGATC CTGTTTGCCT GCGGCATTGG 000960 000961 GAGATAACAT TTTACATTTt ttttcgacgt ctgaaatctg gatttttatg tgaaatcctg ggatttttaa acgtcgctaa 001040 001041 tgaattaaaa TTCAAATCAg gctgggcgcg gtggctcacg ccagcacttt gggaggccga ggcggttgga tcacttgagg 001120 001121 tcaggaattc gagaccagcc tggccaacat ggtgaaatcc cgtctctact gaaaaaacaa aaaattagcc gggcttggtg 001200 001201 gcaggcgcct gtaatccact ctacgcggga ggctgaggca ggagaatcgc tagaaccctg gaggcggagg ttgcagtgag 001280 001281 ctgagatggc gccattgcac tgcagcctgg gctacagagt gagactcctc caaaaaaaaa aaaaaGGAGG GGGAAACAAC 001360 001361 AACAAATTAA AATCAAACCC TGCAGTCATA AATTTGCCAT AACAGATCTA CACACTGAAT TTAAGGGATA ATTTTCTTCA 001440 001441 TGttatttat ttacagtagt ccctttccgc aaggatgtga ggcaacttac agagatacca taaaacatga aaactagatg 001520 001521 aggctgggcg tggtggctca ctcctgtaat cccagcactt tgggaggccg aggcgggcgg atcacctgag gtcaggagtc 001600 001601 ggagaccaac atgtcgaaac ccgtatcttc taaaaataca aaacattagc tgggtatggt ggcgcgtgcc tgtaatccca 001680 001681 gctactcggt agggtgagac aggacaatct cttgaaccct taggaggtgg aggctgcagt gagcggaaat cacgccactg 001760 001761 cactccagcc tgggtgacag aacaagactc catctcacac acacacaaaa aaaatgctag agtaagaaat cagaggaatg 001840 001841 ggaaaatgag gggtggatta aatgaaatac gcataaatta ctatacaaaa tgcctgcagt gaaagcccgt tgaatttgtt 001920 001921 gagatagatt gcaaatttta ctttagtctt cccagaagtc acggtaaaga agggtacaGA AGTATTGTGT ATTCAAAATC 002000 002001 CAAAGTGCCT TTGGGATAAA AGTAAATAGG TCATTCAGGA GAAGGACATG TTTTCTTAAT TCTAAAAGCT GATGAAATAT 002080 002081 ATTTTACAAA TGTTTCTCGG TGACCCCAAA ATACAAATTC AATTTGAAAT GAGCAGGGAT GCTTGGTCTT GTGGCCGTAG 002160 002161 ATCCTCGGTA TATCTACAGA TGACCTTTGG TAATCCTTGA GCTTTCTGTA ATATTTTCGA aaattatatg catgtgtgca 002240 002241 tgtacaaaat tatatgcatg tgtgtacttt tttctgggaa gaggatttgg aattttaatc aacttcttaa aggagtccat 002320 002321 agatcccaaa aggaaaaaga acttctgAAA TTTGTCAAGG GAAGGATAGA TTGCCTATTC TTCAGACCAT CCTTTAAGta 002400 002401 tatatataga tgtgtgtttg tgtgtgtgtg tgtatatata tatatatata tatatatatt tttttttttt ttttgagaca 002480 002481 gagttgccct ctgtcaccca ggctggagtg caatggcatg atctcagctc agtgcaacct ctgcttccct ggcctaagtc 002560 002561 attcttgtgc ctcagccttc cgagtagctg gaattacaga catgtgccac gatgcccagc taatttttgt atttttggta 002640 002641 gctgggatta caggcatgag ccaccacgtc cagctaattt ttgtattttt agtagagacg gggtttcgtc atgttggcca 002720 002721 tgctggtctc gaactcctgg cctcaagtga tcctccggcc ttggcctccc aaagtagtgg gattacaggc atgagcccct 002800 002801 gcacctggcc GGCttttttt tttttttttt tttttttttt tgagacaggg tcttgctctt tcactcaggc tggaatgcag 002880 002881 tggtgcaatc acagctcact gcagcctcga cctcctggac ccaagcgatt ctcccacctc agtgtccttc gtagctgaga 002960 002961 ctacaggtat gcatcaccac ttcagactga tttttgtatt ttttgtagcg atggggtctc gccatgttgc ccaggctgct 003040 003041 tttgaactcc tgaagtcaag cgatccttcc atctcggcct cccaaagtgg ggggattaca ggcatgagcc attgtgcctg 003120 003121 gccAGAGCCT GATATGTTTT TAAATGAGAA GGTGACCAAA AAAGATACTA TTTCAACAAA TCTACTGTTT CTAGCATTGT 003200 003201 TCCATTAAGT GAATGGCAGA AAAGAGGAGA GTTTTTAAAA ACTTGCAGCC TGTTGATTCT TTCATTCAAC AGTTATTTGC 003280 003281 TGAACACATT TTCTTTCTGT TCTTTTATAC ATCAGTTTAA ATTTATGCAG GCAAAGCTTC TGTTAATCAT AAGTCAATGA 003360 003361 TAACTGAAGT GATAACTgaa atcagtagtt tataattgga tagttcattt taagaaggga tgagacaatA CACATAGGTA 003440 003441 CTTTTAATTT CAAGGTAATT TCATTCCAGA AAAATATAAT TGAATTTGCt ttttgtttgt ttgtttgagg tggagtctcg 003520 003521 ctctgt |
Predicted Small Protein
Name | NONHSAT054926_smProtein_2231:2347 |
Length | 39 |
Molecular weight | 4436.3352 |
Aromaticity | 0.184210526316 |
Instability index | 45.5736842105 |
Isoelectric point | 9.50848388672 |
Runs | 8 |
Runs residual | 0.0379155124654 |
Runs probability | 0.0246643702526 |
Amino acid sequence | MCACTKLYACVYFFLGRGFGILINFLKESIDPKRKKNF |
Secondary structure | LLLLLLEEHHHHHHHHLLHHHHHHHHHHLLLHHHHLLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii |