Difference between revisions of "NONHSAT078595"

Revision as of 10:23, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID	NONHSAT078595
Source	NONCODE4.0
Same with	,
Classification	intergenic
Length	1922 nt
Genomic location	chr20-:10382257..10384178
Exon number	1
Exons	10382257..10384178
Genome context
Sequence	000001 AGAACTACCT CCTGAGGAAG CCTGGGGTGA TTCCAGTTAT GATATCACCC TGACTTGATT CCAATTATGA GATTCTGAAC 000080 000081 TTTGAGCTGA TGTTGTAATG CAAAAGTGAA ACTTTTGAGG ATCTGAGGAG TAGGGGGGAC GTATTTTGCA TGTGGTAGGC 000160 000161 AGCCTCTAAG ATGGTTCCCA ATAATCTCAC TTCCTGGTGG TTCACTCTCT GGGTGTAGGT GGGACCTAAT GACTAGCTTC 000240 000241 TAATGAATAG AATACAGCAG AAGGGACAGG ATATCGCTTC TGATATTTGG TGGTAAAAAG ATGAGTTTGT CTCTTGATGC 000320 000321 CTTCTCTCTC AATGGAAGCC AGCTGTCATG TTGGGAACTG CCCCCTGGGG AGGCCCACAT AGCAAGGGTT GAGGGAGGCT 000400 000401 TCTAGCCAAC AGCTCAAAAG GAACTGAATC GTACCAATAA CCACAAGAGT GAATTTGGAA GCAGGTTCTC CCCAGTGGAA 000480 000481 CCTTGAGTTG AGTATAGCCC TACCACTGGA GCCACACGAG AGACCCTGAT GCAAAAAAGC CAGCTAAGCT ACTCCCAGGT 000560 000561 TGGTTCCTAA CCCACAAAAT CTGTGAGATA ATAAATGTTG TTTTAAGTCA AATTTGGGAT GTACTTTCTT ATACAGCAAT 000640 000641 AGCTATCTAA TAAAGGCAGG AGGAAAAGCT TATTTGTAAT AAATTATTTA CTGAAAACTT GGTCACATAA ATGGAAAAAA 000720 000721 GCATTCTTGA TGCCATGCCT TTGCATTTTT ATCATCACCC CAACCTAAAA GAAGGGTTCT TTATCACATG TGTTTACAAT 000800 000801 GTGTCACATA GGAGTTGGGT ATTGTCCTGG TTCTCTTTGC CCTTATCCTG CATTTTTTCA AGTTCCTCCA AGAAGGGGTG 000880 000881 ACACAGCGAA CCTCTCCAAT TGATCTTATA GATTAGGGGC TTCTACTTTT CACGATAGCC ACTTTTTAAA TTCTATCATT 000960 000961 TTTAGCTTTG CCATACAATT TGATTACATT CCTTAGTGAA ACATCAATGC TCTTATTTTG AATATATCAC AAATTCGTTA 001040 001041 AAATATATTT ACAAATACCT CTATGTTTCC TAAAGTTATA ATAATCCCTA GCAGAAAACA CTGGAAATAG AATAAAAGAG 001120 001121 AAAAAAAACC TTCCTCTATA GTTCAAGAAA ATTAGCGTTC AAACTTAGAT GATAAAACAT GAAATGAAAA TTCTTGATGA 001200 001201 AAATAATTTT AGAGGAGTTC CTTTTGGCAG AAATAAATGA TAAGTAAAAA TAGCAACTAA GGTAAGCCTC AGGCAGTGTT 001280 001281 TTGTGACTTA AAGTAAGATT GAGGTCTGAA TATTGCATTA TGAAGTACCT CAGGAGAGAG AATGGGAAAC CGTGATCGCT 001360 001361 GTGGAAAAGG AAAGGGAGAG TGTGAAGAAG AAAATGAAGT CGGTGACAGC TGCTCAATAA TTTCGTGGGA CTCTCAGGAC 001440 001441 ATGTAACATT AAACGTTATT CAACCATAGG AGTCCAACAG GATTATCATC TTATTAATCA AAAGGCATTA GGATTTTAGC 001520 001521 AGCAAGGAAG AAAGTGGAGA GCTACAGCAA ATAAAGGAAA CTTTTAATCA AATACTTATT TGGTCTTATA GATATCCTAC 001600 001601 CCTTTAATTC TTCCATTTGT ACCATATTAG AGAGTCTTTA TATGTTAGAC ATTGTAAGTC AACTGTTAGA CTGAAGCACT 001680 001681 TTATGTAAGT GAAGTATTTT ACACAAGATA TTTAAACTAT ATCACATTAA TATCTTTTAT TATAGGTATC CTTGAACTCA 001760 001761 TTTGGTTTGT ATTATCAAAG CTACTTAGGC ATTTACATTG TAGACAAGAA ATTTGAAGTA ACCATAAATC AGCCATTGTA 001840 001841 CTATGTATTT TCATATTGTT GTTCATATTG TTGAGCAGTT CTTTGGATAA CTTTAAAATA AAATAATGTT GTTTACCATC 001920 001921 AC

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Predicted Small Protein

Name	`NONHSAT078595_smProtein_710:880`
Length	`57`
Molecular weight	`6504.4954`
Aromaticity	`0.160714285714`
Instability index	`46.9501785714`
Isoelectric point	`8.74139404297`
Runs	`9`
Runs residual	`0.00741608118657`
Runs probability	`0.0651828298888`
Amino acid sequence	`MEKSILDAMPLHFYHHPNLKEGFFITCVYNVSHRSWVLSWFSLPLSCIFSSSSKKG`
Secondary structure	`LLLHHHHHLLLLLLLLLLLLLLEEEEEEEELLLLEEEEEEELLLLEEEEEELLLLL`
PRMN	`LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLL`
PiMo	`oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiii`

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>AGAACTACCTCCTGAGGAAGCCTGGGGTGATTCCAGTTATGATATCACCCTGACTTGATTCCAATTATGAGATTCTGAACTTTGAGCTGATGTTGTAATGCAAAAGTGAAACTTTTGAGGATCTGAGGAGTAGGGGGGACGTATTTTGCATGTGGTAGGCAGCCTCTAAGATGGTTCCCAATAATCTCACTTCCTGGTGGTTCACTCTCTGGGTGTAGGTGGGACCTAATGACTAGCTTCTAATGAATAGAATACAGCAGAAGGGACAGGATATCGCTTCTGATATTTGGTGGTAAAAAGATGAGTTTGTCTCTTGATGCCTTCTCTCTCAATGGAAGCCAGCTGTCATGTTGGGAACTGCCCCCTGGGGAGGCCCACATAGCAAGGGTTGAGGGAGGCTTCTAGCCAACAGCTCAAAAGGAACTGAATCGTACCAATAACCACAAGAGTGAATTTGGAAGCAGGTTCTCCCCAGTGGAACCTTGAGTTGAGTATAGCCCTACCACTGGAGCCACACGAGAGACCCTGATGCAAAAAAGCCAGCTAAGCTACTCCCAGGTTGGTTCCTAACCCACAAAATCTGTGAGATAATAAATGTTGTTTTAAGTCAAATTTGGGATGTACTTTCTTATACAGCAATAGCTATCTAATAAAGGCAGGAGGAAAAGCTTATTTGTAATAAATTATTTACTGAAAACTTGGTCACATAAATGGAAAAAAGCATTCTTGATGCCATGCCTTTGCATTTTTATCATCACCCCAACCTAAAAGAAGGGTTCTTTATCACATGTGTTTACAATGTGTCACATAGGAGTTGGGTATTGTCCTGGTTCTCTTTGCCCTTATCCTGCATTTTTTCAAGTTCCTCCAAGAAGGGGTGACACAGCGAACCTCTCCAATTGATCTTATAGATTAGGGGCTTCTACTTTTCACGATAGCCACTTTTTAAATTCTATCATTTTTAGCTTTGCCATACAATTTGATTACATTCCTTAGTGAAACATCAATGCTCTTATTTTGAATATATCACAAATTCGTTAAAATATATTTACAAATACCTCTATGTTTCCTAAAGTTATAATAATCCCTAGCAGAAAACACTGGAAATAGAATAAAAGAGAAAAAAAACCTTCCTCTATAGTTCAAGAAAATTAGCGTTCAAACTTAGATGATAAAACATGAAATGAAAATTCTTGATGAAAATAATTTTAGAGGAGTTCCTTTTGGCAGAAATAAATGATAAGTAAAAATAGCAACTAAGGTAAGCCTCAGGCAGTGTTTTGTGACTTAAAGTAAGATTGAGGTCTGAATATTGCATTATGAAGTACCTCAGGAGAGAGAATGGGAAACCGTGATCGCTGTGGAAAAGGAAAGGGAGAGTGTGAAGAAGAAAATGAAGTCGGTGACAGCTGCTCAATAATTTCGTGGGACTCTCAGGACATGTAACATTAAACGTTATTCAACCATAGGAGTCCAACAGGATTATCATCTTATTAATCAAAAGGCATTAGGATTTTAGCAGCAAGGAAGAAAGTGGAGAGCTACAGCAAATAAAGGAAACTTTTAATCAAATACTTATTTGGTCTTATAGATATCCTACCCTTTAATTCTTCCATTTGTACCATATTAGAGAGTCTTTATATGTTAGACATTGTAAGTCAACTGTTAGACTGAAGCACTTTATGTAAGTGAAGTATTTTACACAAGATATTTAAACTATATCACATTAATATCTTTTATTATAGGTATCCTTGAACTCATTTGGTTTGTATTATCAAAGCTACTTAGGCATTTACATTGTAGACAAGAAATTTGAAGTAACCATAAATCAGCCATTGTACTATGTATTTTCATATTGTTGTTCATATTGTTGAGCAGTTCTTTGGATAACTTTAAAATAAAATAATGTTGTTTACCATCAC</dnaseq>|
 }}
-[[Category:Intergenic]][[Category:NONHSAG031259]]
+[[Category:Intergenic]][[Category:NONHSAG031259]][[Category:Transcripts]]