Difference between revisions of "NONHSAT028050"
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sequence = <dnaseq>GGGAAGGAAGGAGGGAGCCGGGGAGTGGGCCAGGGCAGCAGCCGGGCTGAAGTCGGCTTGGGGAGCCAGAGGGAGCGGAGCGGAACCTGCGGGGCAGAGGCGGCGGCCGCAGCGGCGCAGCTGATAGCAGGAACAGGGCCCTGGGTATCATGTCCACATGCCCAGCAAGAGCCTTGCCTCCCCTGCCTCCCCTCCTTTTTCCTGTCCACCTATATGACCAATCCCTAATTGCTGTCCTGATGATGAGTCATTCCAATTTACTGGATTTAAAACAAAAAGTTGTTACGGTTTCATGGGGTGGCCCCTCTCTCTCTCACCCTCTGGGTTTCGGGAGGTCGAGTGGGGTATTCTCTTTGTTTGGCAGTGGTTGCTGTCCTCTTGGCATCTGAGTCCTTTCCCTGTCCCCACAAGCCCTTCTACTCCCTGTTTGCCTTTCCTTTGCCACCCTCTCCCTGTTTTACATGGAAATTGCACGGGCCTCTCTGTGTTTGCGTGCATGTGTGCGCCTGTATATACATGTATAGAGAGATATATTTGTGGGGGCCGGGGGGAGCGGGGAGGGG</dnaseq>| | sequence = <dnaseq>GGGAAGGAAGGAGGGAGCCGGGGAGTGGGCCAGGGCAGCAGCCGGGCTGAAGTCGGCTTGGGGAGCCAGAGGGAGCGGAGCGGAACCTGCGGGGCAGAGGCGGCGGCCGCAGCGGCGCAGCTGATAGCAGGAACAGGGCCCTGGGTATCATGTCCACATGCCCAGCAAGAGCCTTGCCTCCCCTGCCTCCCCTCCTTTTTCCTGTCCACCTATATGACCAATCCCTAATTGCTGTCCTGATGATGAGTCATTCCAATTTACTGGATTTAAAACAAAAAGTTGTTACGGTTTCATGGGGTGGCCCCTCTCTCTCTCACCCTCTGGGTTTCGGGAGGTCGAGTGGGGTATTCTCTTTGTTTGGCAGTGGTTGCTGTCCTCTTGGCATCTGAGTCCTTTCCCTGTCCCCACAAGCCCTTCTACTCCCTGTTTGCCTTTCCTTTGCCACCCTCTCCCTGTTTTACATGGAAATTGCACGGGCCTCTCTGTGTTTGCGTGCATGTGTGCGCCTGTATATACATGTATAGAGAGATATATTTGTGGGGGCCGGGGGGAGCGGGGAGGGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG011069]] | + | [[Category:Sense]][[Category:NONHSAG011069]][[Category:Transcripts]] |
Revision as of 10:19, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT028050 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
563 nt |
| Genomic location |
chr12-:49332204..49351228 |
| Exon number |
2 |
| Exons |
49332204..49332630,49351093..49351228 |
| Genome context |
|
| Sequence |
000001 GGGAAGGAAG GAGGGAGCCG GGGAGTGGGC CAGGGCAGCA GCCGGGCTGA AGTCGGCTTG GGGAGCCAGA GGGAGCGGAG 000080
000081 CGGAACCTGC GGGGCAGAGG CGGCGGCCGC AGCGGCGCAG CTGATAGCAG GAACAGGGCC CTGGGTATCA TGTCCACATG 000160 000161 CCCAGCAAGA GCCTTGCCTC CCCTGCCTCC CCTCCTTTTT CCTGTCCACC TATATGACCA ATCCCTAATT GCTGTCCTGA 000240 000241 TGATGAGTCA TTCCAATTTA CTGGATTTAA AACAAAAAGT TGTTACGGTT TCATGGGGTG GCCCCTCTCT CTCTCACCCT 000320 000321 CTGGGTTTCG GGAGGTCGAG TGGGGTATTC TCTTTGTTTG GCAGTGGTTG CTGTCCTCTT GGCATCTGAG TCCTTTCCCT 000400 000401 GTCCCCACAA GCCCTTCTAC TCCCTGTTTG CCTTTCCTTT GCCACCCTCT CCCTGTTTTA CATGGAAATT GCACGGGCCT 000480 000481 CTCTGTGTTT GCGTGCATGT GTGCGCCTGT ATATACATGT ATAGAGAGAT ATATTTGTGG GGGCCGGGGG GAGCGGGGAG 000560 000561 GGG |
Predicted Small Protein
| Name | NONHSAT028050_smProtein_149:388 |
| Length | 80 |
| Molecular weight | 8348.8266 |
| Aromaticity | 0.0759493670886 |
| Instability index | 60.1506329114 |
| Isoelectric point | 8.63507080078 |
| Runs | 9 |
| Runs residual | 0.0263568579851 |
| Runs probability | 0.0476849398418 |
| Amino acid sequence | MSTCPARALPPLPPLLFPVHLYDQSLIAVLMMSHSNLLDLKQKVVTVSWGGPSLSHPLGF GRSSGVFSLFGSGCCPLGI |
| Secondary structure | LLLLLLLLLLLLLLLLLLEEELLHHHHHHHHHHHHHHHHHLLLEEEEELLLLLLLLLLLL LLLLLEEEEELLLLLLLLL |
| PRMN | - |
| PiMo | - |
