Difference between revisions of "Lnc-TPRA1-1:9"
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sequence = <dnaseq>TGGGTGTATTTTTTATTATTTCTTTCCATTTTTGTTTGGCTGAAAATATTTTTATCTCACCTTCATTCTTGAATGATTTTTCTCTGAAGGTAGACTTCTAGGTAGGTAGTTATTTTCTTTCAGTAGTTTGAAGACATCATTCTATTGTCTTCTGGTTTTTATATTCTCTACTGAAAAATCAGTTGTCAGTCTACTTGTTGCTCCTTTGAAGGTAAAACAAGTTGTTTCCTCTAGCTGCTTTGAAGATTTTCTCTAGTTTTTGTCTTCAGCAATTACTTTCATGTGCCCAAGTGTAGATTTATTCTGACCATTATGTTTGGGGTTTGTAGTGCTTCTTGAATATGTAAACAAATGGCTTCCATCACTTTTGGAATATTTATTTATTTATTTATTTTGTAGGGATGCGGTCTCACTAGGTTATATCTGGTCCCAAACTCCTGGCCTCAAGCAATTCTCTTCCCTTAACCTCCTAAAGTGTTGGGATTACAGGTGTGAGCTACTGTGCCTGGCCTGGAATATTTTCATCATTTATGTCTTCTGTTCTATTTTCTTTGTCCTTTTTTTCCTGGTGCTTCAAGCACACATATGTTAGATCTTCTCATTCTATTCTCTTTGTCTCTTATACTCTCTTCTGTTTTCCATTCTTTTGTCCTTCTCTGCTTTACTCTGGTGTTTCCCCCATCCTTCCAGTTTAGTAAATCTCTTCAGTTATGTCTATCCAGAGGTTCCCAGGCTTTCTTGGCTCATAATATTCTTAATATCTCATTCCTCTTCCCTCCCCCACCATGGTGCTCCTAGGTAAAAAGGAATACCTAATAGTTTTCTTAAGTAGCTAGATCCTAACAGTATAAGTATTTGTGTCATAACAGAGTAGCCACCTTTTTGGCATTGCACAGCTTCTCAAATTATGGAATCATTGAATATTGCTACCCTCATTTCTTGCTTTACATTGATTTTCATGCAATAATCTCTTTGTATTACAGCGATCTCTGAAAACTTGGCTTTGCAAATATATGATGTTATCAGAAGGAAGGTAGCCATCTAATGTTGAAACTATGAACTACTTTGAGCTAATAGTTTGTGTTGTGTCCAACAGATAGCAATATGTTTCCTTTCAATATATAAACTATTTTGCAGCACTCCTGTGATGCACAGGAGCACCTGGGGCACCTTGGCACATGGTTTGAGAACAGCAGGTCTACTCTTTTGTTAAACATACCCATTAAGTACTGAGTTTCAATTATTGTTTGCATTTTAGTTCTAAAATGTCTATATTACTCTTTTTTCAAATCTTCTCTATCTTATTTAGAGATTGTTTTCAGTTTCCTGCCAAAATTCTCAATGTTTTCTTGAGCATAATAACCATAGTTACTTTAAAGTCTATAAGTGGTCACCCCGATATCTGTGTATCTGCAGATCTGTTTCTATTGGCAGTTGTTTCTGTTGTCATTATCCTGTCTTTTTATGTGCCTGATTGTGATGATAAGGATGATGGTGATATTGATGATGATGGCAGAGATGATGATGTCGATGACATCCTGGACATTGCATTTGAAAAACTATGTGTAGAACAGTTTGAGGCCTAGATGACATTGTCTTCTCCTAGAGAAGATTGACACTGGATCTTGACCGGTGCTTTGTGTCACTAGTAATTTTACTCCACTCTCAGAGACTGGTATGCCTCAGAGCTGTGCTTCAGTCTCTGAGAGCTGCTCCAATTTTGGTTCACATTTATTGTGAGATGCTTTCCTCAGGATCCCCACCCTAGGCTTCAGGAACAGGGATGTTTTCTAAGTCTCCCTGACATTATTGTATTCTGGATCCCATGAAGCTGTCAAAATTCTTCTCAGTCTGTCTTTCAGACACTTCTGATGAAACTGAAAATGCCACCAGGGAGAAGCAGCTGAACAATGTGAGAGATAGAATGGATGCCCTAAAGAAGAGGATGCAGCAGAAATTAGGAAGAGATAAAGAAGAGCAACATTCCTTAAGAAATGCCCTATGGTTGGGAATGGCCATTTCATGTTAGAAACAAAGTTCAGAGCTGGGTTTTGCACTGTGTGCAGCCTGAACCTTCCAAAGCTGGCCTCAGCAATGTCTCCCTTCCTGCATGCTCCTCTGCAATGTGACCCTGACACTCCTCCATCAAGAGGTGGGGCCCAACTTCCCTCTTCTTGAAGCTAGGTTCATCTGTGACTTCTTCAACCCATAAACTTTGGCAAAAGTGATATGCTGTGACTTCTGGGGTTTGGTTGTGAGTGACCAGGCAGCTGCTGCCTTGTTCAGATAACACTTGTGCTGAGGTCGCTGAGCCACTGTGGAAGACATCCAAGCTCCATAAAGACAGGTCAAGTGCACATGCTCCAGTCAACAGCCCAGCTGAGCCCTCAGCATACAGCCAACACCAACTGCAAGCTGAGGGTGAAACAACTTGGATGTCCATTTGGATGTCAAGCTGGACTTCAGATGCCTGTGGTTGCAGCTCTGTCTGCAACTACATGGAAGACGCCATGTGAACCACCTAGTAGAGCCCTTCCTAG</dnaseq>| | sequence = <dnaseq>TGGGTGTATTTTTTATTATTTCTTTCCATTTTTGTTTGGCTGAAAATATTTTTATCTCACCTTCATTCTTGAATGATTTTTCTCTGAAGGTAGACTTCTAGGTAGGTAGTTATTTTCTTTCAGTAGTTTGAAGACATCATTCTATTGTCTTCTGGTTTTTATATTCTCTACTGAAAAATCAGTTGTCAGTCTACTTGTTGCTCCTTTGAAGGTAAAACAAGTTGTTTCCTCTAGCTGCTTTGAAGATTTTCTCTAGTTTTTGTCTTCAGCAATTACTTTCATGTGCCCAAGTGTAGATTTATTCTGACCATTATGTTTGGGGTTTGTAGTGCTTCTTGAATATGTAAACAAATGGCTTCCATCACTTTTGGAATATTTATTTATTTATTTATTTTGTAGGGATGCGGTCTCACTAGGTTATATCTGGTCCCAAACTCCTGGCCTCAAGCAATTCTCTTCCCTTAACCTCCTAAAGTGTTGGGATTACAGGTGTGAGCTACTGTGCCTGGCCTGGAATATTTTCATCATTTATGTCTTCTGTTCTATTTTCTTTGTCCTTTTTTTCCTGGTGCTTCAAGCACACATATGTTAGATCTTCTCATTCTATTCTCTTTGTCTCTTATACTCTCTTCTGTTTTCCATTCTTTTGTCCTTCTCTGCTTTACTCTGGTGTTTCCCCCATCCTTCCAGTTTAGTAAATCTCTTCAGTTATGTCTATCCAGAGGTTCCCAGGCTTTCTTGGCTCATAATATTCTTAATATCTCATTCCTCTTCCCTCCCCCACCATGGTGCTCCTAGGTAAAAAGGAATACCTAATAGTTTTCTTAAGTAGCTAGATCCTAACAGTATAAGTATTTGTGTCATAACAGAGTAGCCACCTTTTTGGCATTGCACAGCTTCTCAAATTATGGAATCATTGAATATTGCTACCCTCATTTCTTGCTTTACATTGATTTTCATGCAATAATCTCTTTGTATTACAGCGATCTCTGAAAACTTGGCTTTGCAAATATATGATGTTATCAGAAGGAAGGTAGCCATCTAATGTTGAAACTATGAACTACTTTGAGCTAATAGTTTGTGTTGTGTCCAACAGATAGCAATATGTTTCCTTTCAATATATAAACTATTTTGCAGCACTCCTGTGATGCACAGGAGCACCTGGGGCACCTTGGCACATGGTTTGAGAACAGCAGGTCTACTCTTTTGTTAAACATACCCATTAAGTACTGAGTTTCAATTATTGTTTGCATTTTAGTTCTAAAATGTCTATATTACTCTTTTTTCAAATCTTCTCTATCTTATTTAGAGATTGTTTTCAGTTTCCTGCCAAAATTCTCAATGTTTTCTTGAGCATAATAACCATAGTTACTTTAAAGTCTATAAGTGGTCACCCCGATATCTGTGTATCTGCAGATCTGTTTCTATTGGCAGTTGTTTCTGTTGTCATTATCCTGTCTTTTTATGTGCCTGATTGTGATGATAAGGATGATGGTGATATTGATGATGATGGCAGAGATGATGATGTCGATGACATCCTGGACATTGCATTTGAAAAACTATGTGTAGAACAGTTTGAGGCCTAGATGACATTGTCTTCTCCTAGAGAAGATTGACACTGGATCTTGACCGGTGCTTTGTGTCACTAGTAATTTTACTCCACTCTCAGAGACTGGTATGCCTCAGAGCTGTGCTTCAGTCTCTGAGAGCTGCTCCAATTTTGGTTCACATTTATTGTGAGATGCTTTCCTCAGGATCCCCACCCTAGGCTTCAGGAACAGGGATGTTTTCTAAGTCTCCCTGACATTATTGTATTCTGGATCCCATGAAGCTGTCAAAATTCTTCTCAGTCTGTCTTTCAGACACTTCTGATGAAACTGAAAATGCCACCAGGGAGAAGCAGCTGAACAATGTGAGAGATAGAATGGATGCCCTAAAGAAGAGGATGCAGCAGAAATTAGGAAGAGATAAAGAAGAGCAACATTCCTTAAGAAATGCCCTATGGTTGGGAATGGCCATTTCATGTTAGAAACAAAGTTCAGAGCTGGGTTTTGCACTGTGTGCAGCCTGAACCTTCCAAAGCTGGCCTCAGCAATGTCTCCCTTCCTGCATGCTCCTCTGCAATGTGACCCTGACACTCCTCCATCAAGAGGTGGGGCCCAACTTCCCTCTTCTTGAAGCTAGGTTCATCTGTGACTTCTTCAACCCATAAACTTTGGCAAAAGTGATATGCTGTGACTTCTGGGGTTTGGTTGTGAGTGACCAGGCAGCTGCTGCCTTGTTCAGATAACACTTGTGCTGAGGTCGCTGAGCCACTGTGGAAGACATCCAAGCTCCATAAAGACAGGTCAAGTGCACATGCTCCAGTCAACAGCCCAGCTGAGCCCTCAGCATACAGCCAACACCAACTGCAAGCTGAGGGTGAAACAACTTGGATGTCCATTTGGATGTCAAGCTGGACTTCAGATGCCTGTGGTTGCAGCTCTGTCTGCAACTACATGGAAGACGCCATGTGAACCACCTAGTAGAGCCCTTCCTAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-TPRA1-1]][[Category:NONHSAG035995]] | + | [[Category:Intergenic]][[Category:lnc-TPRA1-1]][[Category:NONHSAG035995]][[Category:Transcripts]] |
Latest revision as of 05:33, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
lnc-TPRA1-1:9 |
| Source |
LNCipedia2.1 |
| Same with |
NONHSAT091726 |
| Classification |
intergenic |
| Length |
2540 nt |
| Genomic location |
chr3-:127216500..127220435 |
| Exon number |
3 |
| Exons |
127216500..127217002,127217962..127218090,127218528..127220435 |
| Genome context |
|
| Sequence |
000001 TGGGTGTATT TTTTATTATT TCTTTCCATT TTTGTTTGGC TGAAAATATT TTTATCTCAC CTTCATTCTT GAATGATTTT 000080
000081 TCTCTGAAGG TAGACTTCTA GGTAGGTAGT TATTTTCTTT CAGTAGTTTG AAGACATCAT TCTATTGTCT TCTGGTTTTT 000160 000161 ATATTCTCTA CTGAAAAATC AGTTGTCAGT CTACTTGTTG CTCCTTTGAA GGTAAAACAA GTTGTTTCCT CTAGCTGCTT 000240 000241 TGAAGATTTT CTCTAGTTTT TGTCTTCAGC AATTACTTTC ATGTGCCCAA GTGTAGATTT ATTCTGACCA TTATGTTTGG 000320 000321 GGTTTGTAGT GCTTCTTGAA TATGTAAACA AATGGCTTCC ATCACTTTTG GAATATTTAT TTATTTATTT ATTTTGTAGG 000400 000401 GATGCGGTCT CACTAGGTTA TATCTGGTCC CAAACTCCTG GCCTCAAGCA ATTCTCTTCC CTTAACCTCC TAAAGTGTTG 000480 000481 GGATTACAGG TGTGAGCTAC TGTGCCTGGC CTGGAATATT TTCATCATTT ATGTCTTCTG TTCTATTTTC TTTGTCCTTT 000560 000561 TTTTCCTGGT GCTTCAAGCA CACATATGTT AGATCTTCTC ATTCTATTCT CTTTGTCTCT TATACTCTCT TCTGTTTTCC 000640 000641 ATTCTTTTGT CCTTCTCTGC TTTACTCTGG TGTTTCCCCC ATCCTTCCAG TTTAGTAAAT CTCTTCAGTT ATGTCTATCC 000720 000721 AGAGGTTCCC AGGCTTTCTT GGCTCATAAT ATTCTTAATA TCTCATTCCT CTTCCCTCCC CCACCATGGT GCTCCTAGGT 000800 000801 AAAAAGGAAT ACCTAATAGT TTTCTTAAGT AGCTAGATCC TAACAGTATA AGTATTTGTG TCATAACAGA GTAGCCACCT 000880 000881 TTTTGGCATT GCACAGCTTC TCAAATTATG GAATCATTGA ATATTGCTAC CCTCATTTCT TGCTTTACAT TGATTTTCAT 000960 000961 GCAATAATCT CTTTGTATTA CAGCGATCTC TGAAAACTTG GCTTTGCAAA TATATGATGT TATCAGAAGG AAGGTAGCCA 001040 001041 TCTAATGTTG AAACTATGAA CTACTTTGAG CTAATAGTTT GTGTTGTGTC CAACAGATAG CAATATGTTT CCTTTCAATA 001120 001121 TATAAACTAT TTTGCAGCAC TCCTGTGATG CACAGGAGCA CCTGGGGCAC CTTGGCACAT GGTTTGAGAA CAGCAGGTCT 001200 001201 ACTCTTTTGT TAAACATACC CATTAAGTAC TGAGTTTCAA TTATTGTTTG CATTTTAGTT CTAAAATGTC TATATTACTC 001280 001281 TTTTTTCAAA TCTTCTCTAT CTTATTTAGA GATTGTTTTC AGTTTCCTGC CAAAATTCTC AATGTTTTCT TGAGCATAAT 001360 001361 AACCATAGTT ACTTTAAAGT CTATAAGTGG TCACCCCGAT ATCTGTGTAT CTGCAGATCT GTTTCTATTG GCAGTTGTTT 001440 001441 CTGTTGTCAT TATCCTGTCT TTTTATGTGC CTGATTGTGA TGATAAGGAT GATGGTGATA TTGATGATGA TGGCAGAGAT 001520 001521 GATGATGTCG ATGACATCCT GGACATTGCA TTTGAAAAAC TATGTGTAGA ACAGTTTGAG GCCTAGATGA CATTGTCTTC 001600 001601 TCCTAGAGAA GATTGACACT GGATCTTGAC CGGTGCTTTG TGTCACTAGT AATTTTACTC CACTCTCAGA GACTGGTATG 001680 001681 CCTCAGAGCT GTGCTTCAGT CTCTGAGAGC TGCTCCAATT TTGGTTCACA TTTATTGTGA GATGCTTTCC TCAGGATCCC 001760 001761 CACCCTAGGC TTCAGGAACA GGGATGTTTT CTAAGTCTCC CTGACATTAT TGTATTCTGG ATCCCATGAA GCTGTCAAAA 001840 001841 TTCTTCTCAG TCTGTCTTTC AGACACTTCT GATGAAACTG AAAATGCCAC CAGGGAGAAG CAGCTGAACA ATGTGAGAGA 001920 001921 TAGAATGGAT GCCCTAAAGA AGAGGATGCA GCAGAAATTA GGAAGAGATA AAGAAGAGCA ACATTCCTTA AGAAATGCCC 002000 002001 TATGGTTGGG AATGGCCATT TCATGTTAGA AACAAAGTTC AGAGCTGGGT TTTGCACTGT GTGCAGCCTG AACCTTCCAA 002080 002081 AGCTGGCCTC AGCAATGTCT CCCTTCCTGC ATGCTCCTCT GCAATGTGAC CCTGACACTC CTCCATCAAG AGGTGGGGCC 002160 002161 CAACTTCCCT CTTCTTGAAG CTAGGTTCAT CTGTGACTTC TTCAACCCAT AAACTTTGGC AAAAGTGATA TGCTGTGACT 002240 002241 TCTGGGGTTT GGTTGTGAGT GACCAGGCAG CTGCTGCCTT GTTCAGATAA CACTTGTGCT GAGGTCGCTG AGCCACTGTG 002320 002321 GAAGACATCC AAGCTCCATA AAGACAGGTC AAGTGCACAT GCTCCAGTCA ACAGCCCAGC TGAGCCCTCA GCATACAGCC 002400 002401 AACACCAACT GCAAGCTGAG GGTGAAACAA CTTGGATGTC CATTTGGATG TCAAGCTGGA CTTCAGATGC CTGTGGTTGC 002480 002481 AGCTCTGTCT GCAACTACAT GGAAGACGCC ATGTGAACCA CCTAGTAGAG CCCTTCCTAG |
