Difference between revisions of "NONHSAT004695"

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sequence = <dnaseq>gaagaaaggtgatcaggaagagccatcaaagtgttatcctggaattcaagtgaagacagtgtttcaaAGTGGAAATGAACAGTGTCCTGTAACCCTCAGAGTGAGACTAGAGTCAGAATGCAGGCTTTTCTCATTTGAAATCTCAAGGTAAGTCCAGGTCCTTACCTCCACCTAAAAGTTCTGCCATCAAGGAACATCTGCTCATTATCTTCTGTTCACACATCAAATGACTTCAATGTGATCCCTGGATGTTCTCCAAAGAGCTGAAGGGAAATAAATATTCTTTCTTTATCACCAAATACTTCAACTGCAGAGTGATTGTGCTACCAAGGCCTGAAACTTCGGAAAAACCTGCATAACACAAAATATAAAGTAAGAAGGCCCATTCTTATCAGCAACCATATATGTACTTCTCATCACTCTCTCAAGACCCTCTACTGAATCAGAAGCAAACACTAGCTACAGAGAGATATATGCCACAGAGAGGATCCAGAGAGCCCATCTCCGGTCAGTTATCTGTATTTGTATGTCAACTACAGCATCAAAAAGCATAGGCATGGATACTAAGGACCCCCTCTGTACACCAACGCCAGTCCAAAGGACAGTGTGTCACTGTGAACTGGAAATTCATCTCTCTTCTTCAATTTTTTTCTACCTACTTTATGTTTTATCTCTAAGTTGAGGCTGTTTATGGCCTCATCCTCAATTACCTTGTCCC</dnaseq>|
 
sequence = <dnaseq>gaagaaaggtgatcaggaagagccatcaaagtgttatcctggaattcaagtgaagacagtgtttcaaAGTGGAAATGAACAGTGTCCTGTAACCCTCAGAGTGAGACTAGAGTCAGAATGCAGGCTTTTCTCATTTGAAATCTCAAGGTAAGTCCAGGTCCTTACCTCCACCTAAAAGTTCTGCCATCAAGGAACATCTGCTCATTATCTTCTGTTCACACATCAAATGACTTCAATGTGATCCCTGGATGTTCTCCAAAGAGCTGAAGGGAAATAAATATTCTTTCTTTATCACCAAATACTTCAACTGCAGAGTGATTGTGCTACCAAGGCCTGAAACTTCGGAAAAACCTGCATAACACAAAATATAAAGTAAGAAGGCCCATTCTTATCAGCAACCATATATGTACTTCTCATCACTCTCTCAAGACCCTCTACTGAATCAGAAGCAAACACTAGCTACAGAGAGATATATGCCACAGAGAGGATCCAGAGAGCCCATCTCCGGTCAGTTATCTGTATTTGTATGTCAACTACAGCATCAAAAAGCATAGGCATGGATACTAAGGACCCCCTCTGTACACCAACGCCAGTCCAAAGGACAGTGTGTCACTGTGAACTGGAAATTCATCTCTCTTCTTCAATTTTTTTCTACCTACTTTATGTTTTATCTCTAAGTTGAGGCTGTTTATGGCCTCATCCTCAATTACCTTGTCCC</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG002156]]
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[[Category:Intergenic]][[Category:NONHSAG002156]][[Category:Transcripts]]

Latest revision as of 19:33, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT004695

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

718 nt

Genomic location

chr1+:96457997..96488335

Exon number

5

Exons

96457997..96458065,96461677..96461750,96471749..96471977,96486854..96486952,96488089..96488335

Genome context

Sequence
000001 gaagaaaggt gatcaggaag agccatcaaa gtgttatcct ggaattcaag tgaagacagt gtttcaaAGT GGAAATGAAC 000080
000081 AGTGTCCTGT AACCCTCAGA GTGAGACTAG AGTCAGAATG CAGGCTTTTC TCATTTGAAA TCTCAAGGTA AGTCCAGGTC 000160
000161 CTTACCTCCA CCTAAAAGTT CTGCCATCAA GGAACATCTG CTCATTATCT TCTGTTCACA CATCAAATGA CTTCAATGTG 000240
000241 ATCCCTGGAT GTTCTCCAAA GAGCTGAAGG GAAATAAATA TTCTTTCTTT ATCACCAAAT ACTTCAACTG CAGAGTGATT 000320
000321 GTGCTACCAA GGCCTGAAAC TTCGGAAAAA CCTGCATAAC ACAAAATATA AAGTAAGAAG GCCCATTCTT ATCAGCAACC 000400
000401 ATATATGTAC TTCTCATCAC TCTCTCAAGA CCCTCTACTG AATCAGAAGC AAACACTAGC TACAGAGAGA TATATGCCAC 000480
000481 AGAGAGGATC CAGAGAGCCC ATCTCCGGTC AGTTATCTGT ATTTGTATGT CAACTACAGC ATCAAAAAGC ATAGGCATGG 000560
000561 ATACTAAGGA CCCCCTCTGT ACACCAACGC CAGTCCAAAG GACAGTGTGT CACTGTGAAC TGGAAATTCA TCTCTCTTCT 000640
000641 TCAATTTTTT TCTACCTACT TTATGTTTTA TCTCTAAGTT GAGGCTGTTT ATGGCCTCAT CCTCAATTAC CTTGTCCC
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Predicted Small Protein

Name NONHSAT004695_smProtein_404:553
Length 50
Molecular weight 5641.3776
Aromaticity 0.0816326530612
Instability index 65.206122449
Isoelectric point 9.10028076172
Runs 7
Runs residual 0.019194704909
Runs probability 0.034749034749
Amino acid sequence MYFSSLSQDPLLNQKQTLATERYMPQRGSREPISGQLSVFVCQLQHQKA
Secondary structure LEEEELLLLLLLLHHHHHHHHHHLLLLLLLLLLLLEEEEEEEEEEEELL
PRMN -
PiMo -