Difference between revisions of "NONHSAT028799"
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sequence = <dnaseq>AGTGGGCGGGGCCTCCTTGAGGACCCCGGGCTGGGCGCCGCCGCCGGTTCGTCTACTCTTTCCTTCAGCCGCCTCCTTTCAACCTTGTCAACCCGTCGGCGCGGCCTCTGGTGCAGCGGCGGCGGCTCCTGTTCCTGCCGCAGCTCTCTCCCTTTCTTACCTCCCCACCAGATCCCGGAGATCGCCCGCCATGGCTTTACTTACTGCGGCCGCCCGGCTCTTGGGAACCAAGAATGCATCTTGTCTTGTTCTTGCAGCCCGGCATGCCAGTGCTTCCTCCACGGTAAGGTTTGGAAAAGAAGACTAAGAATAAGAATCATTGCGGCCAGCCTGACCTTGGGGCAGAGGATTTGGCAACCACCTGGCCTCTTATTATCCTGAGTATTTCCTGGAAGTGTttgttactattgttattgttatagctgctattattattatattactattTAACAAATAATTTACTCAGTGGTATAGTGAGATGGGAATATCAATACATTTGCCTAATTCTTTTAAATGttttaagtagtgtaaaatatacataacataaaatttaccattttaatcatttttaagtatatggtttagtggcagtagatatgtttacattattgtgcaaccatccatctccagaacttttgtctgcccaaaccgagaaactgttcccattaaacattaactcctcattccttcttcccccTGCCTAATTCTTTTACCCTCA</dnaseq>| | sequence = <dnaseq>AGTGGGCGGGGCCTCCTTGAGGACCCCGGGCTGGGCGCCGCCGCCGGTTCGTCTACTCTTTCCTTCAGCCGCCTCCTTTCAACCTTGTCAACCCGTCGGCGCGGCCTCTGGTGCAGCGGCGGCGGCTCCTGTTCCTGCCGCAGCTCTCTCCCTTTCTTACCTCCCCACCAGATCCCGGAGATCGCCCGCCATGGCTTTACTTACTGCGGCCGCCCGGCTCTTGGGAACCAAGAATGCATCTTGTCTTGTTCTTGCAGCCCGGCATGCCAGTGCTTCCTCCACGGTAAGGTTTGGAAAAGAAGACTAAGAATAAGAATCATTGCGGCCAGCCTGACCTTGGGGCAGAGGATTTGGCAACCACCTGGCCTCTTATTATCCTGAGTATTTCCTGGAAGTGTttgttactattgttattgttatagctgctattattattatattactattTAACAAATAATTTACTCAGTGGTATAGTGAGATGGGAATATCAATACATTTGCCTAATTCTTTTAAATGttttaagtagtgtaaaatatacataacataaaatttaccattttaatcatttttaagtatatggtttagtggcagtagatatgtttacattattgtgcaaccatccatctccagaacttttgtctgcccaaaccgagaaactgttcccattaaacattaactcctcattccttcttcccccTGCCTAATTCTTTTACCCTCA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG011373]] | + | [[Category:Sense]][[Category:NONHSAG011373]][[Category:Transcripts]] |
Latest revision as of 21:03, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT028799 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
718 nt |
| Genomic location |
chr12-:56679944..56694175 |
| Exon number |
2 |
| Exons |
56679944..56680429,56693944..56694175 |
| Genome context |
|
| Sequence |
000001 AGTGGGCGGG GCCTCCTTGA GGACCCCGGG CTGGGCGCCG CCGCCGGTTC GTCTACTCTT TCCTTCAGCC GCCTCCTTTC 000080
000081 AACCTTGTCA ACCCGTCGGC GCGGCCTCTG GTGCAGCGGC GGCGGCTCCT GTTCCTGCCG CAGCTCTCTC CCTTTCTTAC 000160 000161 CTCCCCACCA GATCCCGGAG ATCGCCCGCC ATGGCTTTAC TTACTGCGGC CGCCCGGCTC TTGGGAACCA AGAATGCATC 000240 000241 TTGTCTTGTT CTTGCAGCCC GGCATGCCAG TGCTTCCTCC ACGGTAAGGT TTGGAAAAGA AGACTAAGAA TAAGAATCAT 000320 000321 TGCGGCCAGC CTGACCTTGG GGCAGAGGAT TTGGCAACCA CCTGGCCTCT TATTATCCTG AGTATTTCCT GGAAGTGTtt 000400 000401 gttactattg ttattgttat agctgctatt attattatat tactattTAA CAAATAATTT ACTCAGTGGT ATAGTGAGAT 000480 000481 GGGAATATCA ATACATTTGC CTAATTCTTT TAAATGtttt aagtagtgta aaatatacat aacataaaat ttaccatttt 000560 000561 aatcattttt aagtatatgg tttagtggca gtagatatgt ttacattatt gtgcaaccat ccatctccag aacttttgtc 000640 000641 tgcccaaacc gagaaactgt tcccattaaa cattaactcc tcattccttc ttcccccTGC CTAATTCTTT TACCCTCA |
Predicted Small Protein
| Name | NONHSAT028799_smProtein_596:703 |
| Length | 36 |
| Molecular weight | 3884.5194 |
| Aromaticity | 0.0857142857143 |
| Instability index | 75.06 |
| Isoelectric point | 5.38043212891 |
| Runs | 5 |
| Runs residual | 0.0382566585956 |
| Runs probability | 0.0408231761174 |
| Amino acid sequence | MFTLLCNHPSPELLSAQTEKLFPLNINSSFLLPPA |
| Secondary structure | LEEELLLLLLHHHHHHHHHHHLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
