Difference between revisions of "NONHSAT079948"
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sequence = <dnaseq>gctgctatagacaaatatataagtgaataggtgtggctgtgtttcaataaaaccttatgtacaggagcagatgccaggcctatggagccatagtcagctgaacgctgTTCTAGACTTTACTCTTGTTGTTtattactttgggcaacttaacttgtctgagtttttacgtcctcctttgtaaaatgagaataatccctttccacctgctgtgagaaacaaatgaaatcccataatggatgtctatgaaagcacctattggaaataggctgccgtacagatgtagggaggtattatCTTCTGTGCTCTGGGAAGAATGCTTGTTCCTTAGGAGGCTTGCTGAGATCCTGGGGCTCTGCCAAGTCACTTCTCCAGTATATTTCCATTTGTGATTCCCCCTCAGATCCTGGGCTTTTCCACCCCTCCAGGCCGGCTCTCCATGATGTCCTTCATCCTCAACGCCCTCACCTGTGCCCTGGGCTTGCTGTACTTCATCCGGCGAGGAAAGCAGTGTCTGGATTTCACTGTCACTGTCCATTTCTTTCACCTCCTGGGCTGCTGGTTCTACAGCTCCCGTTTCCCCTCGGCGCTGACCTGGTGGCTGGTCCAAGCCGTGTGCATTGCACTCATGGCTGTCATCGGGGAGTACCTGTGCATGCGGACGGAGCTCAAGGAGATACCCCTCAACTCAGCCCCTAAATCCAATGTCTAGAATCAGGCCCTTTGGACATCCTGCTGACACTTGGGCCCCTTAACACCTTGGGCTGCTCAGACCCTCCAGATGAGGTCCAGCCCAGATCTGAGAGGAACCCTGGAAATGTGAAGTCTCTGTTGGTTTGGGAGAGATAGTGAGGGCCTGTCAAAGAAGGCAGGTAGCAGTCAGCATGACAGCTGCAAGAATGACCTCTGTCTGTTGAAGCCTTGGTATCTGAGAGGTCAGGAAGGGGACCTCTTTGAGGGTAATAACAGAATTGGAACCATGCCACTCTTGAGCCACAATACCTGTCACCAGCCTGTTGTTTTAA</dnaseq>| | sequence = <dnaseq>gctgctatagacaaatatataagtgaataggtgtggctgtgtttcaataaaaccttatgtacaggagcagatgccaggcctatggagccatagtcagctgaacgctgTTCTAGACTTTACTCTTGTTGTTtattactttgggcaacttaacttgtctgagtttttacgtcctcctttgtaaaatgagaataatccctttccacctgctgtgagaaacaaatgaaatcccataatggatgtctatgaaagcacctattggaaataggctgccgtacagatgtagggaggtattatCTTCTGTGCTCTGGGAAGAATGCTTGTTCCTTAGGAGGCTTGCTGAGATCCTGGGGCTCTGCCAAGTCACTTCTCCAGTATATTTCCATTTGTGATTCCCCCTCAGATCCTGGGCTTTTCCACCCCTCCAGGCCGGCTCTCCATGATGTCCTTCATCCTCAACGCCCTCACCTGTGCCCTGGGCTTGCTGTACTTCATCCGGCGAGGAAAGCAGTGTCTGGATTTCACTGTCACTGTCCATTTCTTTCACCTCCTGGGCTGCTGGTTCTACAGCTCCCGTTTCCCCTCGGCGCTGACCTGGTGGCTGGTCCAAGCCGTGTGCATTGCACTCATGGCTGTCATCGGGGAGTACCTGTGCATGCGGACGGAGCTCAAGGAGATACCCCTCAACTCAGCCCCTAAATCCAATGTCTAGAATCAGGCCCTTTGGACATCCTGCTGACACTTGGGCCCCTTAACACCTTGGGCTGCTCAGACCCTCCAGATGAGGTCCAGCCCAGATCTGAGAGGAACCCTGGAAATGTGAAGTCTCTGTTGGTTTGGGAGAGATAGTGAGGGCCTGTCAAAGAAGGCAGGTAGCAGTCAGCATGACAGCTGCAAGAATGACCTCTGTCTGTTGAAGCCTTGGTATCTGAGAGGTCAGGAAGGGGACCTCTTTGAGGGTAATAACAGAATTGGAACCATGCCACTCTTGAGCCACAATACCTGTCACCAGCCTGTTGTTTTAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG031859]] | + | [[Category:Sense]][[Category:NONHSAG031859]][[Category:Transcripts]] |
Latest revision as of 23:59, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT079948 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
1022 nt |
| Genomic location |
chr20+:43993859..43996068 |
| Exon number |
2 |
| Exons |
43993859..43994326,43995515..43996068 |
| Genome context |
|
| Sequence |
000001 gctgctatag acaaatatat aagtgaatag gtgtggctgt gtttcaataa aaccttatgt acaggagcag atgccaggcc 000080
000081 tatggagcca tagtcagctg aacgctgTTC TAGACTTTAC TCTTGTTGTT tattactttg ggcaacttaa cttgtctgag 000160 000161 tttttacgtc ctcctttgta aaatgagaat aatccctttc cacctgctgt gagaaacaaa tgaaatccca taatggatgt 000240 000241 ctatgaaagc acctattgga aataggctgc cgtacagatg tagggaggta ttatCTTCTG TGCTCTGGGA AGAATGCTTG 000320 000321 TTCCTTAGGA GGCTTGCTGA GATCCTGGGG CTCTGCCAAG TCACTTCTCC AGTATATTTC CATTTGTGAT TCCCCCTCAG 000400 000401 ATCCTGGGCT TTTCCACCCC TCCAGGCCGG CTCTCCATGA TGTCCTTCAT CCTCAACGCC CTCACCTGTG CCCTGGGCTT 000480 000481 GCTGTACTTC ATCCGGCGAG GAAAGCAGTG TCTGGATTTC ACTGTCACTG TCCATTTCTT TCACCTCCTG GGCTGCTGGT 000560 000561 TCTACAGCTC CCGTTTCCCC TCGGCGCTGA CCTGGTGGCT GGTCCAAGCC GTGTGCATTG CACTCATGGC TGTCATCGGG 000640 000641 GAGTACCTGT GCATGCGGAC GGAGCTCAAG GAGATACCCC TCAACTCAGC CCCTAAATCC AATGTCTAGA ATCAGGCCCT 000720 000721 TTGGACATCC TGCTGACACT TGGGCCCCTT AACACCTTGG GCTGCTCAGA CCCTCCAGAT GAGGTCCAGC CCAGATCTGA 000800 000801 GAGGAACCCT GGAAATGTGA AGTCTCTGTT GGTTTGGGAG AGATAGTGAG GGCCTGTCAA AGAAGGCAGG TAGCAGTCAG 000880 000881 CATGACAGCT GCAAGAATGA CCTCTGTCTG TTGAAGCCTT GGTATCTGAG AGGTCAGGAA GGGGACCTCT TTGAGGGTAA 000960 000961 TAACAGAATT GGAACCATGC CACTCTTGAG CCACAATACC TGTCACCAGC CTGTTGTTTT AA |
Predicted Small Protein
| Name | NONHSAT079948_smProtein_236:388 |
| Length | 51 |
| Molecular weight | 5839.9425 |
| Aromaticity | 0.1 |
| Instability index | 78.39 |
| Isoelectric point | 8.63189697266 |
| Runs | 7 |
| Runs residual | 0.0246783625731 |
| Runs probability | 0.0237716708306 |
| Amino acid sequence | MSMKAPIGNRLPYRCREVLSSVLWEECLFLRRLAEILGLCQVTSPVYFHL |
| Secondary structure | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLHHHLLLLLEEEL |
| PRMN | - |
| PiMo | - |
