Difference between revisions of "NONHSAT056364"
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sequence = <dnaseq>CCGCGCAGAGCCGGCGGCCAGCCTGGGAGCGGCCCAGAGGGCGCCCGGCGGGTGCAGTGGACGTCGTCAGCGCGCCGCGTGGGGGCCTTTGCAGATTAAGGGACCTCCGCGGCCCCGCGCGGAGCGCTCTGTCACTGATGATGGAGGGGCCACGGCGGTCCGCACCATCCCCCGTGCCTCAGTTTTCCCATCTGTGAGGCTCATGGTGTGACCAGGGACCTCCGTTTTAAAATCACCCACTTTCTTTTTCTTCCTTCTCCTCTCACCCCTTCATCCCGTCCCTCTCTGGACACTGCGCCCCTCTGCGCattccagaggggaccctcatcctgaaacaattcccggcgcggaaccccagctgaatgctcctgcttggggcggggggtcgccaacaattagtccaacatcctcgacagccacccctcctaaccgacaactgcccacgacagccatgggaacaagacacagaccctgcccttaccccactccccacggtgcccacGGCAAGTTTCCCTAGaagaactcgatggcagcctgggcaacatagagagaccccatctctacaaaaaaaatcatttaaaaaaattagctgggcgtggtggtgcacctgaagaggctgaggcaagaggatcgtttgagcccagggagctccaggctgcagtgagtcgtgatcataccactgcactccagcctggatgacaaagtgagatcttgcctcaaaaactaacaaacacacaaaaCCTGAGGATAAATTTTTAATTTTAGGGTGGCACtttatttattgtttgtttgttttttggagacagtctcactctataccccaggctggagtgcagtggcgtgatcttggctcactgcaaactccacctcccagttcaagtgattctcatgcctcagcctcccgag</dnaseq>| | sequence = <dnaseq>CCGCGCAGAGCCGGCGGCCAGCCTGGGAGCGGCCCAGAGGGCGCCCGGCGGGTGCAGTGGACGTCGTCAGCGCGCCGCGTGGGGGCCTTTGCAGATTAAGGGACCTCCGCGGCCCCGCGCGGAGCGCTCTGTCACTGATGATGGAGGGGCCACGGCGGTCCGCACCATCCCCCGTGCCTCAGTTTTCCCATCTGTGAGGCTCATGGTGTGACCAGGGACCTCCGTTTTAAAATCACCCACTTTCTTTTTCTTCCTTCTCCTCTCACCCCTTCATCCCGTCCCTCTCTGGACACTGCGCCCCTCTGCGCattccagaggggaccctcatcctgaaacaattcccggcgcggaaccccagctgaatgctcctgcttggggcggggggtcgccaacaattagtccaacatcctcgacagccacccctcctaaccgacaactgcccacgacagccatgggaacaagacacagaccctgcccttaccccactccccacggtgcccacGGCAAGTTTCCCTAGaagaactcgatggcagcctgggcaacatagagagaccccatctctacaaaaaaaatcatttaaaaaaattagctgggcgtggtggtgcacctgaagaggctgaggcaagaggatcgtttgagcccagggagctccaggctgcagtgagtcgtgatcataccactgcactccagcctggatgacaaagtgagatcttgcctcaaaaactaacaaacacacaaaaCCTGAGGATAAATTTTTAATTTTAGGGTGGCACtttatttattgtttgtttgttttttggagacagtctcactctataccccaggctggagtgcagtggcgtgatcttggctcactgcaaactccacctcccagttcaagtgattctcatgcctcagcctcccgag</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG022950]] | + | [[Category:Intergenic]][[Category:NONHSAG022950]][[Category:Transcripts]] |
Revision as of 11:29, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056364 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
906 nt |
Genomic location |
chr17-:78233157..78234062 |
Exon number |
1 |
Exons |
78233157..78234062 |
Genome context |
|
Sequence |
000001 CCGCGCAGAG CCGGCGGCCA GCCTGGGAGC GGCCCAGAGG GCGCCCGGCG GGTGCAGTGG ACGTCGTCAG CGCGCCGCGT 000080
000081 GGGGGCCTTT GCAGATTAAG GGACCTCCGC GGCCCCGCGC GGAGCGCTCT GTCACTGATG ATGGAGGGGC CACGGCGGTC 000160 000161 CGCACCATCC CCCGTGCCTC AGTTTTCCCA TCTGTGAGGC TCATGGTGTG ACCAGGGACC TCCGTTTTAA AATCACCCAC 000240 000241 TTTCTTTTTC TTCCTTCTCC TCTCACCCCT TCATCCCGTC CCTCTCTGGA CACTGCGCCC CTCTGCGCat tccagagggg 000320 000321 accctcatcc tgaaacaatt cccggcgcgg aaccccagct gaatgctcct gcttggggcg gggggtcgcc aacaattagt 000400 000401 ccaacatcct cgacagccac ccctcctaac cgacaactgc ccacgacagc catgggaaca agacacagac cctgccctta 000480 000481 ccccactccc cacggtgccc acGGCAAGTT TCCCTAGaag aactcgatgg cagcctgggc aacatagaga gaccccatct 000560 000561 ctacaaaaaa aatcatttaa aaaaattagc tgggcgtggt ggtgcacctg aagaggctga ggcaagagga tcgtttgagc 000640 000641 ccagggagct ccaggctgca gtgagtcgtg atcataccac tgcactccag cctggatgac aaagtgagat cttgcctcaa 000720 000721 aaactaacaa acacacaaaa CCTGAGGATA AATTTTTAAT TTTAGGGTGG CACtttattt attgtttgtt tgttttttgg 000800 000801 agacagtctc actctatacc ccaggctgga gtgcagtggc gtgatcttgg ctcactgcaa actccacctc ccagttcaag 000880 000881 tgattctcat gcctcagcct cccgag |
Predicted Small Protein
Name | NONHSAT056364_smProtein_362:610 |
Length | 83 |
Molecular weight | 9496.7951 |
Aromaticity | 0.0853658536585 |
Instability index | 59.5036585366 |
Isoelectric point | 10.4183959961 |
Runs | 9 |
Runs residual | 0.0261456023651 |
Runs probability | 0.0402265010108 |
Amino acid sequence | MLLLGAGGRQQLVQHPRQPPLLTDNCPRQPWEQDTDPALTPLPTVPTASFPRRTRWQPGQ HRETPSLQKKSFKKISWAWWCT |
Secondary structure | LEEELLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLHHHHHHHLLLEEEEELL |
PRMN | - |
PiMo | - |