Difference between revisions of "NONHSAT145331"
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sequence = <dnaseq>GATCCGGCCCCGGCTTGAACTAGCTCAGCTCCGAGCTCGCGGAACCACGCCCCCGGGAGACTCTGGCCCGGCCAGCGCGGGCCAGGTCTTCAGTCCTATATCGCCCCGCCTTGGGAAAAGGTGCAGGGGCCTCTCGCCGCCTCGTCGGGCCCTTCCTCTCTACCTGCCTCTCCAACCCCTCTCGGCCCCGAGCCACCCGGCAGCGGGGGTGGGTGTGCAGAGGTGCGGCGTCCAGAACCCGGCTCCTGCAGAGGCTCTGGGTGGCAGCAGCCCTGTTACCGCTTAGATGGCGCGCAGGACAGAGCCCCCCGACGGGGGCTGGGGATGGGTGGTGGTGCTCTCAGCGTTCTTCCAGTCGGCGCTTGTGTTTGGGGTGCTCCGCTCCTTTGGGGTCTTCTTCGTGGAGTTTGTGGCGGCGTTTGAGGAGCAGGCAGCGCGCGTCTCCTGGATCGCCTCCATAGGAATCGCGGTGCAGCAGTTTGGGAGTGAGTGCGGCGCCTGGATCTGGCGGACTGCGACCCTCGGAAGGGAGAGGGAATGCGGCGACTGGGAAGTGGAAGGGCGAGGGGCGGGAGATGCTGGGGGGGAGACCCCTGAGATCTTCTCGCAGCGCCCCTTCCACTTCCTCAGGCCCGGTAGGCAGTGCCCTGAGCACGAAGTTCGGGCCCAGGCCCGTGGTGATGACTGGAGGCATCTTGGCTGCGCTGGGGATGCTGCTCGCCTCTTTTGCTACTTCCTTGACCCACCTATACCTGAGTATTGGGTTGCTGTCAGGTGAGAGCCTGCACAAGGGCAGGAGAGTCAAATGCTTAGATCGTTGGATGTTCACCTCCTTCCTGCTCCTTCCAAAGGGTTCGGGGAGAAGCTGAGGGAAAGTTTAGCTAGCACCTGTACCCAGAAGGGAATTCTTAATAGGAATGACTAAAGCGACAAACATGGTGAGGAATTAGGAAATTCAAGGATGATGA</dnaseq>| | sequence = <dnaseq>GATCCGGCCCCGGCTTGAACTAGCTCAGCTCCGAGCTCGCGGAACCACGCCCCCGGGAGACTCTGGCCCGGCCAGCGCGGGCCAGGTCTTCAGTCCTATATCGCCCCGCCTTGGGAAAAGGTGCAGGGGCCTCTCGCCGCCTCGTCGGGCCCTTCCTCTCTACCTGCCTCTCCAACCCCTCTCGGCCCCGAGCCACCCGGCAGCGGGGGTGGGTGTGCAGAGGTGCGGCGTCCAGAACCCGGCTCCTGCAGAGGCTCTGGGTGGCAGCAGCCCTGTTACCGCTTAGATGGCGCGCAGGACAGAGCCCCCCGACGGGGGCTGGGGATGGGTGGTGGTGCTCTCAGCGTTCTTCCAGTCGGCGCTTGTGTTTGGGGTGCTCCGCTCCTTTGGGGTCTTCTTCGTGGAGTTTGTGGCGGCGTTTGAGGAGCAGGCAGCGCGCGTCTCCTGGATCGCCTCCATAGGAATCGCGGTGCAGCAGTTTGGGAGTGAGTGCGGCGCCTGGATCTGGCGGACTGCGACCCTCGGAAGGGAGAGGGAATGCGGCGACTGGGAAGTGGAAGGGCGAGGGGCGGGAGATGCTGGGGGGGAGACCCCTGAGATCTTCTCGCAGCGCCCCTTCCACTTCCTCAGGCCCGGTAGGCAGTGCCCTGAGCACGAAGTTCGGGCCCAGGCCCGTGGTGATGACTGGAGGCATCTTGGCTGCGCTGGGGATGCTGCTCGCCTCTTTTGCTACTTCCTTGACCCACCTATACCTGAGTATTGGGTTGCTGTCAGGTGAGAGCCTGCACAAGGGCAGGAGAGTCAAATGCTTAGATCGTTGGATGTTCACCTCCTTCCTGCTCCTTCCAAAGGGTTCGGGGAGAAGCTGAGGGAAAGTTTAGCTAGCACCTGTACCCAGAAGGGAATTCTTAATAGGAATGACTAAAGCGACAAACATGGTGAGGAATTAGGAAATTCAAGGATGATGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG020685]] | + | [[Category:Sense]][[Category:NONHSAG020685]][[Category:Transcripts]] |
Latest revision as of 03:17, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT145331 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
968 nt |
| Genomic location |
chr17+:6939416..6940383 |
| Exon number |
1 |
| Exons |
6939416..6940383 |
| Genome context |
|
| Sequence |
000001 GATCCGGCCC CGGCTTGAAC TAGCTCAGCT CCGAGCTCGC GGAACCACGC CCCCGGGAGA CTCTGGCCCG GCCAGCGCGG 000080
000081 GCCAGGTCTT CAGTCCTATA TCGCCCCGCC TTGGGAAAAG GTGCAGGGGC CTCTCGCCGC CTCGTCGGGC CCTTCCTCTC 000160 000161 TACCTGCCTC TCCAACCCCT CTCGGCCCCG AGCCACCCGG CAGCGGGGGT GGGTGTGCAG AGGTGCGGCG TCCAGAACCC 000240 000241 GGCTCCTGCA GAGGCTCTGG GTGGCAGCAG CCCTGTTACC GCTTAGATGG CGCGCAGGAC AGAGCCCCCC GACGGGGGCT 000320 000321 GGGGATGGGT GGTGGTGCTC TCAGCGTTCT TCCAGTCGGC GCTTGTGTTT GGGGTGCTCC GCTCCTTTGG GGTCTTCTTC 000400 000401 GTGGAGTTTG TGGCGGCGTT TGAGGAGCAG GCAGCGCGCG TCTCCTGGAT CGCCTCCATA GGAATCGCGG TGCAGCAGTT 000480 000481 TGGGAGTGAG TGCGGCGCCT GGATCTGGCG GACTGCGACC CTCGGAAGGG AGAGGGAATG CGGCGACTGG GAAGTGGAAG 000560 000561 GGCGAGGGGC GGGAGATGCT GGGGGGGAGA CCCCTGAGAT CTTCTCGCAG CGCCCCTTCC ACTTCCTCAG GCCCGGTAGG 000640 000641 CAGTGCCCTG AGCACGAAGT TCGGGCCCAG GCCCGTGGTG ATGACTGGAG GCATCTTGGC TGCGCTGGGG ATGCTGCTCG 000720 000721 CCTCTTTTGC TACTTCCTTG ACCCACCTAT ACCTGAGTAT TGGGTTGCTG TCAGGTGAGA GCCTGCACAA GGGCAGGAGA 000800 000801 GTCAAATGCT TAGATCGTTG GATGTTCACC TCCTTCCTGC TCCTTCCAAA GGGTTCGGGG AGAAGCTGAG GGAAAGTTTA 000880 000881 GCTAGCACCT GTACCCAGAA GGGAATTCTT AATAGGAATG ACTAAAGCGA CAAACATGGT GAGGAATTAG GAAATTCAAG 000960 000961 GATGATGA |
Predicted Small Protein
| Name | NONHSAT145331_smProtein_575:868 |
| Length | 98 |
| Molecular weight | 10161.8794 |
| Aromaticity | 0.0618556701031 |
| Instability index | 63.2195876289 |
| Isoelectric point | 11.7966918945 |
| Runs | 10 |
| Runs residual | 0.0284459717449 |
| Runs probability | 0.0540275569687 |
| Amino acid sequence | MLGGRPLRSSRSAPSTSSGPVGSALSTKFGPRPVVMTGGILAALGMLLASFATSLTHLYL SIGLLSGESLHKGRRVKCLDRWMFTSFLLLPKGSGRS |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELHHHHHHHHHHHHHHHHHHHHHHH HHHEELLLLLLLLLEEEEEHHHHHHHEEELLLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHH LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
| PiMo | ooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTT iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |
