Difference between revisions of "NONHSAT029126"
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sequence = <dnaseq>AACCAAAGATAGTGGCATTTACATAACAGAAGTTTCAAGGCATTTCAGCAAGACCCAGCATTAGCAAGGCTATGTTTAAGCAACACTATAATGTACATCCTACTTCCTGAGAGAAAGAAATCAGAGTGGGTCCTAGTAGTAACCTACCTTCACAGGTCAGCTAGGAGGACTGATGATGCTCATCACTGGAGCATCTTCTCTGTTCTATCACAGATTGGTAGCCCTGGGACCATGGCATTAAAAAGCACCACACTTTGCTCTAAGCACCCATAGGCACCATGAAATTCACCGGAAGGTTCACATGGCACAGATTCCCACCTAACTCTCCCAACTGAAAATTGCTCTCAGGATTATTTATATTCTTTTTCATCATTCCTTGAGATATTTGGAAATCCAGTCTATAGAAAAATTACTCAAGAACTGTCACTCAAAATCAAGCTCAGCCTGCCATTTGACTCTTAAGACAATACCAGGCAAGCATGAACTTCCTTAGAGAGATAATTATGCACATACTTGCAGGAATAAGTATGAATAAACAGAGAAGAATACATAGTTCCTCTAAATACATGCTATAGTTTATTCATTCCTTCTTCAATAAGTACTTATTGAAGCTTTCTTTGTCTCAGGCATTTGTCAAGATGTTGGGGATACAGCAGTAACCAATACAGGCCTTCTCCCTGCCCCTTGGATCTTATAGTAGGAAAGTACAATTACAATCTTAATTACAGAACAGCATGTTAATTGTACAGTAAGGGGAGAAGCCCCTTACTTCTTATGACTTGGAGATGAGGAAAGCTGCAATTTGAATCAGTTATTAAGAGTTAGCTGGAAAATGGTGGTAAAGGAGCAGAAAACTCTTCCAGGAAGAAACAGCATGTGTGAAGAACCACATGCCGTGAGAGATTTCATGGAGGAAAAAGGTGTTCTTTGTAGGTGACTCAAAGAATGGGAGAGGGCAGATGGCAAGAGAGATGATTGGAGAAATAAGGAGTTGAAATTAAAGGCCATATTGAGGAGTTCAAATTTATCCTAAGAGCAGTGGAAAGCCATTCACAGGTTTAAACACGATAGTGACGTGATCCACTTTCAGTGTGCCTGGAGTGTGGAGAGTGGATTGAAAGATAATAAGACAGAAAGTCTCAGTTTGCAGCTCTTGGAACTAATCCAGATGAGAGATGAGGATGCTCTTCCTTGGTTGTGGCAGTAGAAACAGAGGAGCAGGTGGATTCGAGTGGTGTGTTGGAGATAGAATATGTAGGCCTGGGTAATTGATTGGCTGGGTGGGAGAGAAGAGAGATGTAGAGGGAGCAGTCAGAGGTGACACCCAGGCTTGGGCAGTTGTCAGGGTGTTAGGCGTCATATGAGAGGAGAAGGCTCAGGACACAGAGGCTGTGATGGGAACGGGATTATGGAAAACACGGTGTTTACTTTTGGGTGTGCCTATGGATAACTGGGTAGAGAAGCCCCATAAGCAGACCAAGAACTTCAGGAGAGAGATCAAGACTAGAGAGTTGGGAATCTTCCACCTTTGGCTCGTCATTTCCTCTTAAAAAGGAGGAGCTGGGCTTCAGCCCTAAGAACTTCATTGCCCTGGGGATCAGACAGCCCCTACCTACCCCTGCCCACTCCTCTGGAGACTGAGCCTTGCCCGTGCATATTTAGGTCATTTCCCACACTGTCTTAGAGAACTTGTCACCAGAAACCACATGTATTTGCATGTTTTTTGTTAATTTAGCTAAAGCAATTGAATGTAGATACTCAGAAGAAATAAAAAATGATGTTTC</dnaseq>| | sequence = <dnaseq>AACCAAAGATAGTGGCATTTACATAACAGAAGTTTCAAGGCATTTCAGCAAGACCCAGCATTAGCAAGGCTATGTTTAAGCAACACTATAATGTACATCCTACTTCCTGAGAGAAAGAAATCAGAGTGGGTCCTAGTAGTAACCTACCTTCACAGGTCAGCTAGGAGGACTGATGATGCTCATCACTGGAGCATCTTCTCTGTTCTATCACAGATTGGTAGCCCTGGGACCATGGCATTAAAAAGCACCACACTTTGCTCTAAGCACCCATAGGCACCATGAAATTCACCGGAAGGTTCACATGGCACAGATTCCCACCTAACTCTCCCAACTGAAAATTGCTCTCAGGATTATTTATATTCTTTTTCATCATTCCTTGAGATATTTGGAAATCCAGTCTATAGAAAAATTACTCAAGAACTGTCACTCAAAATCAAGCTCAGCCTGCCATTTGACTCTTAAGACAATACCAGGCAAGCATGAACTTCCTTAGAGAGATAATTATGCACATACTTGCAGGAATAAGTATGAATAAACAGAGAAGAATACATAGTTCCTCTAAATACATGCTATAGTTTATTCATTCCTTCTTCAATAAGTACTTATTGAAGCTTTCTTTGTCTCAGGCATTTGTCAAGATGTTGGGGATACAGCAGTAACCAATACAGGCCTTCTCCCTGCCCCTTGGATCTTATAGTAGGAAAGTACAATTACAATCTTAATTACAGAACAGCATGTTAATTGTACAGTAAGGGGAGAAGCCCCTTACTTCTTATGACTTGGAGATGAGGAAAGCTGCAATTTGAATCAGTTATTAAGAGTTAGCTGGAAAATGGTGGTAAAGGAGCAGAAAACTCTTCCAGGAAGAAACAGCATGTGTGAAGAACCACATGCCGTGAGAGATTTCATGGAGGAAAAAGGTGTTCTTTGTAGGTGACTCAAAGAATGGGAGAGGGCAGATGGCAAGAGAGATGATTGGAGAAATAAGGAGTTGAAATTAAAGGCCATATTGAGGAGTTCAAATTTATCCTAAGAGCAGTGGAAAGCCATTCACAGGTTTAAACACGATAGTGACGTGATCCACTTTCAGTGTGCCTGGAGTGTGGAGAGTGGATTGAAAGATAATAAGACAGAAAGTCTCAGTTTGCAGCTCTTGGAACTAATCCAGATGAGAGATGAGGATGCTCTTCCTTGGTTGTGGCAGTAGAAACAGAGGAGCAGGTGGATTCGAGTGGTGTGTTGGAGATAGAATATGTAGGCCTGGGTAATTGATTGGCTGGGTGGGAGAGAAGAGAGATGTAGAGGGAGCAGTCAGAGGTGACACCCAGGCTTGGGCAGTTGTCAGGGTGTTAGGCGTCATATGAGAGGAGAAGGCTCAGGACACAGAGGCTGTGATGGGAACGGGATTATGGAAAACACGGTGTTTACTTTTGGGTGTGCCTATGGATAACTGGGTAGAGAAGCCCCATAAGCAGACCAAGAACTTCAGGAGAGAGATCAAGACTAGAGAGTTGGGAATCTTCCACCTTTGGCTCGTCATTTCCTCTTAAAAAGGAGGAGCTGGGCTTCAGCCCTAAGAACTTCATTGCCCTGGGGATCAGACAGCCCCTACCTACCCCTGCCCACTCCTCTGGAGACTGAGCCTTGCCCGTGCATATTTAGGTCATTTCCCACACTGTCTTAGAGAACTTGTCACCAGAAACCACATGTATTTGCATGTTTTTTGTTAATTTAGCTAAAGCAATTGAATGTAGATACTCAGAAGAAATAAAAAATGATGTTTC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intronic(S)]][[Category:NONHSAG011522]] | + | [[Category:Intronic(S)]][[Category:NONHSAG011522]][[Category:Transcripts]] |
Latest revision as of 21:04, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT029126 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1784 nt |
Genomic location |
chr12+:64392054..64393594 |
Exon number |
1 |
Exons |
64392054..64393594 |
Genome context |
|
Sequence |
000001 AACCAAAGAT AGTGGCATTT ACATAACAGA AGTTTCAAGG CATTTCAGCA AGACCCAGCA TTAGCAAGGC TATGTTTAAG 000080
000081 CAACACTATA ATGTACATCC TACTTCCTGA GAGAAAGAAA TCAGAGTGGG TCCTAGTAGT AACCTACCTT CACAGGTCAG 000160 000161 CTAGGAGGAC TGATGATGCT CATCACTGGA GCATCTTCTC TGTTCTATCA CAGATTGGTA GCCCTGGGAC CATGGCATTA 000240 000241 AAAAGCACCA CACTTTGCTC TAAGCACCCA TAGGCACCAT GAAATTCACC GGAAGGTTCA CATGGCACAG ATTCCCACCT 000320 000321 AACTCTCCCA ACTGAAAATT GCTCTCAGGA TTATTTATAT TCTTTTTCAT CATTCCTTGA GATATTTGGA AATCCAGTCT 000400 000401 ATAGAAAAAT TACTCAAGAA CTGTCACTCA AAATCAAGCT CAGCCTGCCA TTTGACTCTT AAGACAATAC CAGGCAAGCA 000480 000481 TGAACTTCCT TAGAGAGATA ATTATGCACA TACTTGCAGG AATAAGTATG AATAAACAGA GAAGAATACA TAGTTCCTCT 000560 000561 AAATACATGC TATAGTTTAT TCATTCCTTC TTCAATAAGT ACTTATTGAA GCTTTCTTTG TCTCAGGCAT TTGTCAAGAT 000640 000641 GTTGGGGATA CAGCAGTAAC CAATACAGGC CTTCTCCCTG CCCCTTGGAT CTTATAGTAG GAAAGTACAA TTACAATCTT 000720 000721 AATTACAGAA CAGCATGTTA ATTGTACAGT AAGGGGAGAA GCCCCTTACT TCTTATGACT TGGAGATGAG GAAAGCTGCA 000800 000801 ATTTGAATCA GTTATTAAGA GTTAGCTGGA AAATGGTGGT AAAGGAGCAG AAAACTCTTC CAGGAAGAAA CAGCATGTGT 000880 000881 GAAGAACCAC ATGCCGTGAG AGATTTCATG GAGGAAAAAG GTGTTCTTTG TAGGTGACTC AAAGAATGGG AGAGGGCAGA 000960 000961 TGGCAAGAGA GATGATTGGA GAAATAAGGA GTTGAAATTA AAGGCCATAT TGAGGAGTTC AAATTTATCC TAAGAGCAGT 001040 001041 GGAAAGCCAT TCACAGGTTT AAACACGATA GTGACGTGAT CCACTTTCAG TGTGCCTGGA GTGTGGAGAG TGGATTGAAA 001120 001121 GATAATAAGA CAGAAAGTCT CAGTTTGCAG CTCTTGGAAC TAATCCAGAT GAGAGATGAG GATGCTCTTC CTTGGTTGTG 001200 001201 GCAGTAGAAA CAGAGGAGCA GGTGGATTCG AGTGGTGTGT TGGAGATAGA ATATGTAGGC CTGGGTAATT GATTGGCTGG 001280 001281 GTGGGAGAGA AGAGAGATGT AGAGGGAGCA GTCAGAGGTG ACACCCAGGC TTGGGCAGTT GTCAGGGTGT TAGGCGTCAT 001360 001361 ATGAGAGGAG AAGGCTCAGG ACACAGAGGC TGTGATGGGA ACGGGATTAT GGAAAACACG GTGTTTACTT TTGGGTGTGC 001440 001441 CTATGGATAA CTGGGTAGAG AAGCCCCATA AGCAGACCAA GAACTTCAGG AGAGAGATCA AGACTAGAGA GTTGGGAATC 001520 001521 TTCCACCTTT GGCTCGTCAT TTCCTCTTAA AAAGGAGGAG CTGGGCTTCA GCCCTAAGAA CTTCATTGCC CTGGGGATCA 001600 001601 GACAGCCCCT ACCTACCCCT GCCCACTCCT CTGGAGACTG AGCCTTGCCC GTGCATATTT AGGTCATTTC CCACACTGTC 001680 001681 TTAGAGAACT TGTCACCAGA AACCACATGT ATTTGCATGT TTTTTGTTAA TTTAGCTAAA GCAATTGAAT GTAGATACTC 001760 001761 AGAAGAAATA AAAAATGATG TTTC |
Predicted Small Protein
Name | NONHSAT029126_smProtein_1394:1549 |
Length | 52 |
Molecular weight | 6065.149 |
Aromaticity | 0.0980392156863 |
Instability index | 40.8647058824 |
Isoelectric point | 10.1774291992 |
Runs | 8 |
Runs residual | 0.00262085032033 |
Runs probability | 0.0413906553613 |
Amino acid sequence | MGTGLWKTRCLLLGVPMDNWVEKPHKQTKNFRREIKTRELGIFHLWLVISS |
Secondary structure | LLLLLLLLEEEELLLLLLLLLLLLLLLLHHHHHHEEEEELLLEEEEEEEEL |
PRMN | - |
PiMo | - |