Difference between revisions of "NONHSAT080419"
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sequence = <dnaseq>GGGCTGGATCCCTCAGCCGCCGCCGCTCCTCCTCCTGGCAGGCCGGCCGCGGAGTCAGCTGACGCCGGCGCTCCAGCCTCGCCTCCCCGCGCCGCGCTCTGCGCTCCCCGAAAGTGGCTGCAAGCCGGCCGCCCACTGTCAGGGTTGGGGGGACAGAGAAAGTGATGTGCGCCTTCTAAAGCCTCGCCCAGCGCCGCCGAAGCAGCTTCACCTCTCCAACTTTCTCCCACCGACTGCTTGTCTTGACCCTGCCCTCCACCCTCCCCAGAGCCACTTCGGGTGCGCGCTCTTGGGTAAAGGGGGGGTCACCGGCTGTCTGGGATGGCTTCCAATTTTAATGACATAGTGAAGCAAGGGTACGTGAGGATCCGGAGCAGACGCCTCGGGgtgctgatcctgagagccctccgcagtgaacaccctgcatgcagatctccttcttggaacctgttcctggaaaacccagtctccagcaACCTGATATGTAACTGCAAATCTGCAACTCTAGACCAACCTTCTAAAGAGGGATTTAAGACCTTTTTCAAGAATCTGGCTTGATTTTTTGGCCCATGGTTCTCCCTTTATTTTACTCAATGTTCTCAAAACTAAAATGGCTCTTTAATTTGATTTTCGTAAAATGGAAATTTGGTAGATCATATTTTATTTACTATGTTGTTAAAATGCCCCAATCTCCTCAGTAGATTCATACACTGAAAAAAAAATAAAAAAGAAAATACCTTAA</dnaseq>| | sequence = <dnaseq>GGGCTGGATCCCTCAGCCGCCGCCGCTCCTCCTCCTGGCAGGCCGGCCGCGGAGTCAGCTGACGCCGGCGCTCCAGCCTCGCCTCCCCGCGCCGCGCTCTGCGCTCCCCGAAAGTGGCTGCAAGCCGGCCGCCCACTGTCAGGGTTGGGGGGACAGAGAAAGTGATGTGCGCCTTCTAAAGCCTCGCCCAGCGCCGCCGAAGCAGCTTCACCTCTCCAACTTTCTCCCACCGACTGCTTGTCTTGACCCTGCCCTCCACCCTCCCCAGAGCCACTTCGGGTGCGCGCTCTTGGGTAAAGGGGGGGTCACCGGCTGTCTGGGATGGCTTCCAATTTTAATGACATAGTGAAGCAAGGGTACGTGAGGATCCGGAGCAGACGCCTCGGGgtgctgatcctgagagccctccgcagtgaacaccctgcatgcagatctccttcttggaacctgttcctggaaaacccagtctccagcaACCTGATATGTAACTGCAAATCTGCAACTCTAGACCAACCTTCTAAAGAGGGATTTAAGACCTTTTTCAAGAATCTGGCTTGATTTTTTGGCCCATGGTTCTCCCTTTATTTTACTCAATGTTCTCAAAACTAAAATGGCTCTTTAATTTGATTTTCGTAAAATGGAAATTTGGTAGATCATATTTTATTTACTATGTTGTTAAAATGCCCCAATCTCCTCAGTAGATTCATACACTGAAAAAAAAATAAAAAAGAAAATACCTTAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG032067]] | + | [[Category:Sense]][[Category:NONHSAG032067]][[Category:Transcripts]] |
Revision as of 09:42, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080419 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
742 nt |
Genomic location |
chr20+:53092165..53111693 |
Exon number |
2 |
Exons |
53092165..53092551,53111339..53111693 |
Genome context |
|
Sequence |
000001 GGGCTGGATC CCTCAGCCGC CGCCGCTCCT CCTCCTGGCA GGCCGGCCGC GGAGTCAGCT GACGCCGGCG CTCCAGCCTC 000080
000081 GCCTCCCCGC GCCGCGCTCT GCGCTCCCCG AAAGTGGCTG CAAGCCGGCC GCCCACTGTC AGGGTTGGGG GGACAGAGAA 000160 000161 AGTGATGTGC GCCTTCTAAA GCCTCGCCCA GCGCCGCCGA AGCAGCTTCA CCTCTCCAAC TTTCTCCCAC CGACTGCTTG 000240 000241 TCTTGACCCT GCCCTCCACC CTCCCCAGAG CCACTTCGGG TGCGCGCTCT TGGGTAAAGG GGGGGTCACC GGCTGTCTGG 000320 000321 GATGGCTTCC AATTTTAATG ACATAGTGAA GCAAGGGTAC GTGAGGATCC GGAGCAGACG CCTCGGGgtg ctgatcctga 000400 000401 gagccctccg cagtgaacac cctgcatgca gatctccttc ttggaacctg ttcctggaaa acccagtctc cagcaACCTG 000480 000481 ATATGTAACT GCAAATCTGC AACTCTAGAC CAACCTTCTA AAGAGGGATT TAAGACCTTT TTCAAGAATC TGGCTTGATT 000560 000561 TTTTGGCCCA TGGTTCTCCC TTTATTTTAC TCAATGTTCT CAAAACTAAA ATGGCTCTTT AATTTGATTT TCGTAAAATG 000640 000641 GAAATTTGGT AGATCATATT TTATTTACTA TGTTGTTAAA ATGCCCCAAT CTCCTCAGTA GATTCATACA CTGAAAAAAA 000720 000721 AATAAAAAAG AAAATACCTT AA |
Predicted Small Protein
Name | NONHSAT080419_smProtein_569:700 |
Length | 44 |
Molecular weight | 5372.5002 |
Aromaticity | 0.279069767442 |
Instability index | 79.693255814 |
Isoelectric point | 10.0946655273 |
Runs | 5 |
Runs residual | 0.0410243010191 |
Runs probability | 0.0446740858505 |
Amino acid sequence | MVLPLFYSMFSKLKWLFNLIFVKWKFGRSYFIYYVVKMPQSPQ |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHHHLLEEEEEEEEELLLLLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooo |