Difference between revisions of "NONHSAT080419"

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sequence = <dnaseq>GGGCTGGATCCCTCAGCCGCCGCCGCTCCTCCTCCTGGCAGGCCGGCCGCGGAGTCAGCTGACGCCGGCGCTCCAGCCTCGCCTCCCCGCGCCGCGCTCTGCGCTCCCCGAAAGTGGCTGCAAGCCGGCCGCCCACTGTCAGGGTTGGGGGGACAGAGAAAGTGATGTGCGCCTTCTAAAGCCTCGCCCAGCGCCGCCGAAGCAGCTTCACCTCTCCAACTTTCTCCCACCGACTGCTTGTCTTGACCCTGCCCTCCACCCTCCCCAGAGCCACTTCGGGTGCGCGCTCTTGGGTAAAGGGGGGGTCACCGGCTGTCTGGGATGGCTTCCAATTTTAATGACATAGTGAAGCAAGGGTACGTGAGGATCCGGAGCAGACGCCTCGGGgtgctgatcctgagagccctccgcagtgaacaccctgcatgcagatctccttcttggaacctgttcctggaaaacccagtctccagcaACCTGATATGTAACTGCAAATCTGCAACTCTAGACCAACCTTCTAAAGAGGGATTTAAGACCTTTTTCAAGAATCTGGCTTGATTTTTTGGCCCATGGTTCTCCCTTTATTTTACTCAATGTTCTCAAAACTAAAATGGCTCTTTAATTTGATTTTCGTAAAATGGAAATTTGGTAGATCATATTTTATTTACTATGTTGTTAAAATGCCCCAATCTCCTCAGTAGATTCATACACTGAAAAAAAAATAAAAAAGAAAATACCTTAA</dnaseq>|
 
sequence = <dnaseq>GGGCTGGATCCCTCAGCCGCCGCCGCTCCTCCTCCTGGCAGGCCGGCCGCGGAGTCAGCTGACGCCGGCGCTCCAGCCTCGCCTCCCCGCGCCGCGCTCTGCGCTCCCCGAAAGTGGCTGCAAGCCGGCCGCCCACTGTCAGGGTTGGGGGGACAGAGAAAGTGATGTGCGCCTTCTAAAGCCTCGCCCAGCGCCGCCGAAGCAGCTTCACCTCTCCAACTTTCTCCCACCGACTGCTTGTCTTGACCCTGCCCTCCACCCTCCCCAGAGCCACTTCGGGTGCGCGCTCTTGGGTAAAGGGGGGGTCACCGGCTGTCTGGGATGGCTTCCAATTTTAATGACATAGTGAAGCAAGGGTACGTGAGGATCCGGAGCAGACGCCTCGGGgtgctgatcctgagagccctccgcagtgaacaccctgcatgcagatctccttcttggaacctgttcctggaaaacccagtctccagcaACCTGATATGTAACTGCAAATCTGCAACTCTAGACCAACCTTCTAAAGAGGGATTTAAGACCTTTTTCAAGAATCTGGCTTGATTTTTTGGCCCATGGTTCTCCCTTTATTTTACTCAATGTTCTCAAAACTAAAATGGCTCTTTAATTTGATTTTCGTAAAATGGAAATTTGGTAGATCATATTTTATTTACTATGTTGTTAAAATGCCCCAATCTCCTCAGTAGATTCATACACTGAAAAAAAAATAAAAAAGAAAATACCTTAA</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG032067]]
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[[Category:Sense]][[Category:NONHSAG032067]][[Category:Transcripts]]

Revision as of 09:42, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT080419

Source

NONCODE4.0

Same with

,

Classification

sense

Length

742 nt

Genomic location

chr20+:53092165..53111693

Exon number

2

Exons

53092165..53092551,53111339..53111693

Genome context

Sequence
000001 GGGCTGGATC CCTCAGCCGC CGCCGCTCCT CCTCCTGGCA GGCCGGCCGC GGAGTCAGCT GACGCCGGCG CTCCAGCCTC 000080
000081 GCCTCCCCGC GCCGCGCTCT GCGCTCCCCG AAAGTGGCTG CAAGCCGGCC GCCCACTGTC AGGGTTGGGG GGACAGAGAA 000160
000161 AGTGATGTGC GCCTTCTAAA GCCTCGCCCA GCGCCGCCGA AGCAGCTTCA CCTCTCCAAC TTTCTCCCAC CGACTGCTTG 000240
000241 TCTTGACCCT GCCCTCCACC CTCCCCAGAG CCACTTCGGG TGCGCGCTCT TGGGTAAAGG GGGGGTCACC GGCTGTCTGG 000320
000321 GATGGCTTCC AATTTTAATG ACATAGTGAA GCAAGGGTAC GTGAGGATCC GGAGCAGACG CCTCGGGgtg ctgatcctga 000400
000401 gagccctccg cagtgaacac cctgcatgca gatctccttc ttggaacctg ttcctggaaa acccagtctc cagcaACCTG 000480
000481 ATATGTAACT GCAAATCTGC AACTCTAGAC CAACCTTCTA AAGAGGGATT TAAGACCTTT TTCAAGAATC TGGCTTGATT 000560
000561 TTTTGGCCCA TGGTTCTCCC TTTATTTTAC TCAATGTTCT CAAAACTAAA ATGGCTCTTT AATTTGATTT TCGTAAAATG 000640
000641 GAAATTTGGT AGATCATATT TTATTTACTA TGTTGTTAAA ATGCCCCAAT CTCCTCAGTA GATTCATACA CTGAAAAAAA 000720
000721 AATAAAAAAG AAAATACCTT AA
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Predicted Small Protein

Name NONHSAT080419_smProtein_569:700
Length 44
Molecular weight 5372.5002
Aromaticity 0.279069767442
Instability index 79.693255814
Isoelectric point 10.0946655273
Runs 5
Runs residual 0.0410243010191
Runs probability 0.0446740858505
Amino acid sequence MVLPLFYSMFSKLKWLFNLIFVKWKFGRSYFIYYVVKMPQSPQ
Secondary structure LLLHHHHHHHHHHHHHHHHHHHHHHHLLEEEEEEEEELLLLLL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooo