Difference between revisions of "NONHSAT081262"
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sequence = <dnaseq>cacagaatgggataactgcctggcactcaccaagctacacttgaagaggatcaatccatgtcatcatgtccccaatttcatagcaccaagtattttgtttattcacaaatgccctattatggacatctagcaaacaatgatacatcagaaaaggagatgtgcataaattttcatggaataagGTTGTGGAAAATGCACTAGAATCAACAAACATGGGGACTAATtcaactcggatatcatgtcttcagagaagtttctcctgccctcctctccctgtagaattaagtattcttccactgtgccaccctctaacttgtgctcatatcttcctctattgtagttatgtgttcacatccctgttgtttttgtaccggcttctcccaaagggagacatttagtcttattcttcttggtaactttagcacagacctggcagattgttgacactcaacaaatgtttattgactcaaatgcatTCAGTTGAACATTGACCTTTGATCAACTCTGGGAAAAGTCTGCAAAGCTAGTTAGGACATTCAGAAATTCATTTCATTTCAATCCTAACTAAATAAATTATTGAAGTC</dnaseq>| | sequence = <dnaseq>cacagaatgggataactgcctggcactcaccaagctacacttgaagaggatcaatccatgtcatcatgtccccaatttcatagcaccaagtattttgtttattcacaaatgccctattatggacatctagcaaacaatgatacatcagaaaaggagatgtgcataaattttcatggaataagGTTGTGGAAAATGCACTAGAATCAACAAACATGGGGACTAATtcaactcggatatcatgtcttcagagaagtttctcctgccctcctctccctgtagaattaagtattcttccactgtgccaccctctaacttgtgctcatatcttcctctattgtagttatgtgttcacatccctgttgtttttgtaccggcttctcccaaagggagacatttagtcttattcttcttggtaactttagcacagacctggcagattgttgacactcaacaaatgtttattgactcaaatgcatTCAGTTGAACATTGACCTTTGATCAACTCTGGGAAAAGTCTGCAAAGCTAGTTAGGACATTCAGAAATTCATTTCATTTCAATCCTAACTAAATAAATTATTGAAGTC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG032431]] | + | [[Category:Intergenic]][[Category:NONHSAG032431]][[Category:Transcripts]] |
Latest revision as of 00:05, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT081262 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
584 nt |
| Genomic location |
chr21+:18003110..18012950 |
| Exon number |
2 |
| Exons |
18003110..18003291,18012549..18012950 |
| Genome context |
|
| Sequence |
000001 cacagaatgg gataactgcc tggcactcac caagctacac ttgaagagga tcaatccatg tcatcatgtc cccaatttca 000080
000081 tagcaccaag tattttgttt attcacaaat gccctattat ggacatctag caaacaatga tacatcagaa aaggagatgt 000160 000161 gcataaattt tcatggaata agGTTGTGGA AAATGCACTA GAATCAACAA ACATGGGGAC TAATtcaact cggatatcat 000240 000241 gtcttcagag aagtttctcc tgccctcctc tccctgtaga attaagtatt cttccactgt gccaccctct aacttgtgct 000320 000321 catatcttcc tctattgtag ttatgtgttc acatccctgt tgtttttgta ccggcttctc ccaaagggag acatttagtc 000400 000401 ttattcttct tggtaacttt agcacagacc tggcagattg ttgacactca acaaatgttt attgactcaa atgcatTCAG 000480 000481 TTGAACATTG ACCTTTGATC AACTCTGGGA AAAGTCTGCA AAGCTAGTTA GGACATTCAG AAATTCATTT CATTTCAATC 000560 000561 CTAACTAAAT AAATTATTGA AGTC |
Predicted Small Protein
| Name | NONHSAT081262_smProtein_212:397 |
| Length | 62 |
| Molecular weight | 6891.1938 |
| Aromaticity | 0.114754098361 |
| Instability index | 60.9950819672 |
| Isoelectric point | 8.37347412109 |
| Runs | 9 |
| Runs residual | 0.00527605049934 |
| Runs probability | 0.0757914777524 |
| Amino acid sequence | MGTNSTRISCLQRSFSCPPLPVELSILPLCHPLTCAHIFLYCSYVFTSLLFLYRLLPKGD I |
| Secondary structure | LLLLLLEEEELLLLLLLLLLLEEEEELLLLLLLHHHHHEEEHHHHHHHHHHHHHHLLLLL L |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL L |
| PiMo | ooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiii i |
