Difference between revisions of "Lnc-SLC44A3-1:3"
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sequence = <dnaseq>CAGGCATCCTCCGCGGCGGGCCGGACCGGGCCGGCGGAGGGGAGCGGAAGCCCACCGGGGCTGGCCCGCCGCTGACCCGCCGCCTCCGTCTGCCTCCTCCCGGGCTCTGGGCCCAGCGCGCCCAGATGCCGGGCAGGACCCCTCCGCCCGCTGCTGGAACACCAATAGCAGCGTTGGAGCCTCTGGGCCGGAGGAACTGGGGCCTCCACCGACACCTGCTTCTTCCCTCACCTCGCAGCCTTCCACACCTGTTGATCTGACCTCTGCCCCGCTGCCGCCCAGGAGTAACCTAAGGCTTTTGGCCTGATTCGAGCTCACTCCGTCTAAACCTCTAAATGCGGTGCGAAAAAATCCTGGGGAATGTGCCATGCAAAGCCTGGGCATTTCAAGTGCTTTTCTGGATTCGCATCAACTCCTCTTTACAGGCATCTTTATCCGGAATTCAGCTCGTCCCAAACCCCACGTGGTGTAGCTCTGCTTGTGTTTTTGAATCCCGGGGCCTCTTTGAATCAGAAGCCCTTTGTATAGAGATAAGTATCCTTTAGGCCAGAATCAGCCTCCATTTTTTTCGCAGTCCCATTTCCTACCCGTAATACTTTCTTCTGATTTTAAAGCCATTTGATAGAGAAGGGACAGGGAACAGAACCTTCGCCCCCCGCCTGAGCAGCTGGTAGACTAGATATCTTCCAAACATTATCTCATTTACTTCCCTGGAGTTACAAATAGGTAGATTTCATGTCCGTTGAGGGGTGAGAAAGCTGAAACTTTGAGACTTAAGAATCCTGGCCGAGGTCAGCCTCCTCCGAAGCTTCATCTCTTGCCACCACTTTCTGGTGCACACCTAGGACAGATTTCAATCCCTGAGATCCCAGGATGAAACCTATGTTTGCCAAATACCAGCTACTGTGCCAGAAGAGATCATGGAACCAGGTGTGGAAAGCTGCTTGAGAAGAGGAGCCAAAACATCATAGTTGAACCGTCCTGGAATAGAAACTCGCCCTGAATTCTTTCTTGTGTGAAATCCAAGAGCCCTCTCTTGGGGTTGGATCGGGACCCTGTTCCTGTAACAAGTCCACAATGCCAGAGAATTAAAGAGAACCACAAAGCAAGACCAACTCCCCTTCTTCCACCTTCCCAACCTACTCAATGTGAAGATGATGAAGATGAAGACCTTTGTCATGATCCACATCCACTTAATAAATGTTTCTGCCATTTCAGTTCCTGTTATCGTGCTTTGAGGTGCACTGAACTGCAGCAAACCCAGGGGATCCAAGGCTACGTTGAAAAGCCTTTGACCACAGTGCAGGGAGCAGAAGACATTAATGACGTGATGTCGACACAGCCCGCACTCAGGATCCTCCAGGAAAAGAACACAGAGATAACCCCGGATCGATGGTACTTTTTGAAAATGCTTTATTGCAAAAGAGTGGCTAGGGTTTTACAAGGGCTATGAAGAAACATATTAAGGTTAATAAAGCTTTTTATTGAGTGTTTACTGAGTGTTACTATGTGCTTTACATCTATTAACTCATTTCATCTTCAAAACAACCCTATAAAGATGTTACAACTATAATCCTAACCTTACAAATGAAACAACTGAGGCACAGTGAAGTGCAGTGGCCTGCCCAGGTAAAAAGCAAGACAGAATTTGAACCCAGGCAGCCTGACCCCAGGGTCCAGGTATTAAACCATTCTGCTATAGTGCCTCTAAGATAACAGAGAAACTTGATGAATTACTGGGTTACTGAATTTTAGTTTACATAGGTTGTTTTTTTCCCCTTAAGAGTAGAACAAAACATACCTGAAGTATGGAAAATAACATTTATT</dnaseq>| | sequence = <dnaseq>CAGGCATCCTCCGCGGCGGGCCGGACCGGGCCGGCGGAGGGGAGCGGAAGCCCACCGGGGCTGGCCCGCCGCTGACCCGCCGCCTCCGTCTGCCTCCTCCCGGGCTCTGGGCCCAGCGCGCCCAGATGCCGGGCAGGACCCCTCCGCCCGCTGCTGGAACACCAATAGCAGCGTTGGAGCCTCTGGGCCGGAGGAACTGGGGCCTCCACCGACACCTGCTTCTTCCCTCACCTCGCAGCCTTCCACACCTGTTGATCTGACCTCTGCCCCGCTGCCGCCCAGGAGTAACCTAAGGCTTTTGGCCTGATTCGAGCTCACTCCGTCTAAACCTCTAAATGCGGTGCGAAAAAATCCTGGGGAATGTGCCATGCAAAGCCTGGGCATTTCAAGTGCTTTTCTGGATTCGCATCAACTCCTCTTTACAGGCATCTTTATCCGGAATTCAGCTCGTCCCAAACCCCACGTGGTGTAGCTCTGCTTGTGTTTTTGAATCCCGGGGCCTCTTTGAATCAGAAGCCCTTTGTATAGAGATAAGTATCCTTTAGGCCAGAATCAGCCTCCATTTTTTTCGCAGTCCCATTTCCTACCCGTAATACTTTCTTCTGATTTTAAAGCCATTTGATAGAGAAGGGACAGGGAACAGAACCTTCGCCCCCCGCCTGAGCAGCTGGTAGACTAGATATCTTCCAAACATTATCTCATTTACTTCCCTGGAGTTACAAATAGGTAGATTTCATGTCCGTTGAGGGGTGAGAAAGCTGAAACTTTGAGACTTAAGAATCCTGGCCGAGGTCAGCCTCCTCCGAAGCTTCATCTCTTGCCACCACTTTCTGGTGCACACCTAGGACAGATTTCAATCCCTGAGATCCCAGGATGAAACCTATGTTTGCCAAATACCAGCTACTGTGCCAGAAGAGATCATGGAACCAGGTGTGGAAAGCTGCTTGAGAAGAGGAGCCAAAACATCATAGTTGAACCGTCCTGGAATAGAAACTCGCCCTGAATTCTTTCTTGTGTGAAATCCAAGAGCCCTCTCTTGGGGTTGGATCGGGACCCTGTTCCTGTAACAAGTCCACAATGCCAGAGAATTAAAGAGAACCACAAAGCAAGACCAACTCCCCTTCTTCCACCTTCCCAACCTACTCAATGTGAAGATGATGAAGATGAAGACCTTTGTCATGATCCACATCCACTTAATAAATGTTTCTGCCATTTCAGTTCCTGTTATCGTGCTTTGAGGTGCACTGAACTGCAGCAAACCCAGGGGATCCAAGGCTACGTTGAAAAGCCTTTGACCACAGTGCAGGGAGCAGAAGACATTAATGACGTGATGTCGACACAGCCCGCACTCAGGATCCTCCAGGAAAAGAACACAGAGATAACCCCGGATCGATGGTACTTTTTGAAAATGCTTTATTGCAAAAGAGTGGCTAGGGTTTTACAAGGGCTATGAAGAAACATATTAAGGTTAATAAAGCTTTTTATTGAGTGTTTACTGAGTGTTACTATGTGCTTTACATCTATTAACTCATTTCATCTTCAAAACAACCCTATAAAGATGTTACAACTATAATCCTAACCTTACAAATGAAACAACTGAGGCACAGTGAAGTGCAGTGGCCTGCCCAGGTAAAAAGCAAGACAGAATTTGAACCCAGGCAGCCTGACCCCAGGGTCCAGGTATTAAACCATTCTGCTATAGTGCCTCTAAGATAACAGAGAAACTTGATGAATTACTGGGTTACTGAATTTTAGTTTACATAGGTTGTTTTTTTCCCCTTAAGAGTAGAACAAAACATACCTGAAGTATGGAAAATAACATTTATT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-SLC44A3-1]] | + | [[Category:Intergenic]][[Category:lnc-SLC44A3-1]][[Category:NONHSAG002133]] |
Revision as of 08:52, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
lnc-SLC44A3-1:3 |
Source |
LNCipedia2.1 |
Same with |
NONHSAT004627 |
Classification |
intergenic |
Length |
1827 nt |
Genomic location |
chr1+:95392967..95429158 |
Exon number |
4 |
Exons |
95392967..95393958,95397428..95397541,95405385..95405481,95428535..95429158 |
Genome context |
|
Sequence |
000001 CAGGCATCCT CCGCGGCGGG CCGGACCGGG CCGGCGGAGG GGAGCGGAAG CCCACCGGGG CTGGCCCGCC GCTGACCCGC 000080
000081 CGCCTCCGTC TGCCTCCTCC CGGGCTCTGG GCCCAGCGCG CCCAGATGCC GGGCAGGACC CCTCCGCCCG CTGCTGGAAC 000160 000161 ACCAATAGCA GCGTTGGAGC CTCTGGGCCG GAGGAACTGG GGCCTCCACC GACACCTGCT TCTTCCCTCA CCTCGCAGCC 000240 000241 TTCCACACCT GTTGATCTGA CCTCTGCCCC GCTGCCGCCC AGGAGTAACC TAAGGCTTTT GGCCTGATTC GAGCTCACTC 000320 000321 CGTCTAAACC TCTAAATGCG GTGCGAAAAA ATCCTGGGGA ATGTGCCATG CAAAGCCTGG GCATTTCAAG TGCTTTTCTG 000400 000401 GATTCGCATC AACTCCTCTT TACAGGCATC TTTATCCGGA ATTCAGCTCG TCCCAAACCC CACGTGGTGT AGCTCTGCTT 000480 000481 GTGTTTTTGA ATCCCGGGGC CTCTTTGAAT CAGAAGCCCT TTGTATAGAG ATAAGTATCC TTTAGGCCAG AATCAGCCTC 000560 000561 CATTTTTTTC GCAGTCCCAT TTCCTACCCG TAATACTTTC TTCTGATTTT AAAGCCATTT GATAGAGAAG GGACAGGGAA 000640 000641 CAGAACCTTC GCCCCCCGCC TGAGCAGCTG GTAGACTAGA TATCTTCCAA ACATTATCTC ATTTACTTCC CTGGAGTTAC 000720 000721 AAATAGGTAG ATTTCATGTC CGTTGAGGGG TGAGAAAGCT GAAACTTTGA GACTTAAGAA TCCTGGCCGA GGTCAGCCTC 000800 000801 CTCCGAAGCT TCATCTCTTG CCACCACTTT CTGGTGCACA CCTAGGACAG ATTTCAATCC CTGAGATCCC AGGATGAAAC 000880 000881 CTATGTTTGC CAAATACCAG CTACTGTGCC AGAAGAGATC ATGGAACCAG GTGTGGAAAG CTGCTTGAGA AGAGGAGCCA 000960 000961 AAACATCATA GTTGAACCGT CCTGGAATAG AAACTCGCCC TGAATTCTTT CTTGTGTGAA ATCCAAGAGC CCTCTCTTGG 001040 001041 GGTTGGATCG GGACCCTGTT CCTGTAACAA GTCCACAATG CCAGAGAATT AAAGAGAACC ACAAAGCAAG ACCAACTCCC 001120 001121 CTTCTTCCAC CTTCCCAACC TACTCAATGT GAAGATGATG AAGATGAAGA CCTTTGTCAT GATCCACATC CACTTAATAA 001200 001201 ATGTTTCTGC CATTTCAGTT CCTGTTATCG TGCTTTGAGG TGCACTGAAC TGCAGCAAAC CCAGGGGATC CAAGGCTACG 001280 001281 TTGAAAAGCC TTTGACCACA GTGCAGGGAG CAGAAGACAT TAATGACGTG ATGTCGACAC AGCCCGCACT CAGGATCCTC 001360 001361 CAGGAAAAGA ACACAGAGAT AACCCCGGAT CGATGGTACT TTTTGAAAAT GCTTTATTGC AAAAGAGTGG CTAGGGTTTT 001440 001441 ACAAGGGCTA TGAAGAAACA TATTAAGGTT AATAAAGCTT TTTATTGAGT GTTTACTGAG TGTTACTATG TGCTTTACAT 001520 001521 CTATTAACTC ATTTCATCTT CAAAACAACC CTATAAAGAT GTTACAACTA TAATCCTAAC CTTACAAATG AAACAACTGA 001600 001601 GGCACAGTGA AGTGCAGTGG CCTGCCCAGG TAAAAAGCAA GACAGAATTT GAACCCAGGC AGCCTGACCC CAGGGTCCAG 001680 001681 GTATTAAACC ATTCTGCTAT AGTGCCTCTA AGATAACAGA GAAACTTGAT GAATTACTGG GTTACTGAAT TTTAGTTTAC 001760 001761 ATAGGTTGTT TTTTTCCCCT TAAGAGTAGA ACAAAACATA CCTGAAGTAT GGAAAATAAC ATTTATT |