Difference between revisions of "NONHSAT081782"
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sequence = <dnaseq>AATGGTGGCTGTTTTTTTCTATTTCTGACTCTGCCATGAAtttttttttttttttttaaagacaatatctcactctgttgcctaggctggagtgcagtggtgcaaccacagctcactgcaccttcaaatgctggagctcaggcaatcctcttacctccgctttccaagcagctgggaccacagATGTATCCTCCACTCCTCGCTGGCCACCATCCTGCTGCCCAACAGAAGAAGCTCTTCTGTCTCCGATTTCCTGAACGGTCTAAGGGAGCCAGTGGGCTAGGCCCATGCTTTGGTTCAAAGCGTTTGGAGAACATCTTCTTGCTCCTTTTCCGGAAACGAGATAATGGACACAGAGTCCCAGACGTCATCCTTTGGACCAGGAAGAAACAGGCTCCTGCCAGCACCGACAGCAACGAAAATGTTCCCACGGAGATCAGGATGACTTGCTGAAGCTCAGTGGAGGCTAAAAAGAGGACACGAAAGTGAACAGAATGATCTTCCTACGCACAACACAAACATCAGTTAATGTTCCATCCATGCTGCTTAAAGAGCATTCCTGTCCTAGTAAAATGGGCAAGTCCCTCTACCCCCCACCCTCACCTGGTATGCTTACATTAATAGCTAAAGTCAATCCTGTAATGAAATAAAGCAAGTGGTAGCTGTCTGGTAGCCTCCACTACTGCAAATCTCAG</dnaseq>| | sequence = <dnaseq>AATGGTGGCTGTTTTTTTCTATTTCTGACTCTGCCATGAAtttttttttttttttttaaagacaatatctcactctgttgcctaggctggagtgcagtggtgcaaccacagctcactgcaccttcaaatgctggagctcaggcaatcctcttacctccgctttccaagcagctgggaccacagATGTATCCTCCACTCCTCGCTGGCCACCATCCTGCTGCCCAACAGAAGAAGCTCTTCTGTCTCCGATTTCCTGAACGGTCTAAGGGAGCCAGTGGGCTAGGCCCATGCTTTGGTTCAAAGCGTTTGGAGAACATCTTCTTGCTCCTTTTCCGGAAACGAGATAATGGACACAGAGTCCCAGACGTCATCCTTTGGACCAGGAAGAAACAGGCTCCTGCCAGCACCGACAGCAACGAAAATGTTCCCACGGAGATCAGGATGACTTGCTGAAGCTCAGTGGAGGCTAAAAAGAGGACACGAAAGTGAACAGAATGATCTTCCTACGCACAACACAAACATCAGTTAATGTTCCATCCATGCTGCTTAAAGAGCATTCCTGTCCTAGTAAAATGGGCAAGTCCCTCTACCCCCCACCCTCACCTGGTATGCTTACATTAATAGCTAAAGTCAATCCTGTAATGAAATAAAGCAAGTGGTAGCTGTCTGGTAGCCTCCACTACTGCAAATCTCAG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG032705]] | + | [[Category:Intergenic]][[Category:NONHSAG032705]][[Category:Transcripts]] |
Latest revision as of 00:07, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081782 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
695 nt |
Genomic location |
chr21-:34804792..34821271 |
Exon number |
4 |
Exons |
34804792..34805109,34809190..34809299,34811521..34811604,34821089..34821271 |
Genome context |
|
Sequence |
000001 AATGGTGGCT GTTTTTTTCT ATTTCTGACT CTGCCATGAA tttttttttt tttttttaaa gacaatatct cactctgttg 000080
000081 cctaggctgg agtgcagtgg tgcaaccaca gctcactgca ccttcaaatg ctggagctca ggcaatcctc ttacctccgc 000160 000161 tttccaagca gctgggacca cagATGTATC CTCCACTCCT CGCTGGCCAC CATCCTGCTG CCCAACAGAA GAAGCTCTTC 000240 000241 TGTCTCCGAT TTCCTGAACG GTCTAAGGGA GCCAGTGGGC TAGGCCCATG CTTTGGTTCA AAGCGTTTGG AGAACATCTT 000320 000321 CTTGCTCCTT TTCCGGAAAC GAGATAATGG ACACAGAGTC CCAGACGTCA TCCTTTGGAC CAGGAAGAAA CAGGCTCCTG 000400 000401 CCAGCACCGA CAGCAACGAA AATGTTCCCA CGGAGATCAG GATGACTTGC TGAAGCTCAG TGGAGGCTAA AAAGAGGACA 000480 000481 CGAAAGTGAA CAGAATGATC TTCCTACGCA CAACACAAAC ATCAGTTAAT GTTCCATCCA TGCTGCTTAA AGAGCATTCC 000560 000561 TGTCCTAGTA AAATGGGCAA GTCCCTCTAC CCCCCACCCT CACCTGGTAT GCTTACATTA ATAGCTAAAG TCAATCCTGT 000640 000641 AATGAAATAA AGCAAGTGGT AGCTGTCTGG TAGCCTCCAC TACTGCAAAT CTCAG |
Predicted Small Protein
Name | NONHSAT081782_smProtein_494:649 |
Length | 52 |
Molecular weight | 5600.7712 |
Aromaticity | 0.0392156862745 |
Instability index | 59.0960784314 |
Isoelectric point | 10.0223999023 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.0349859663586 |
Amino acid sequence | MIFLRTTQTSVNVPSMLLKEHSCPSKMGKSLYPPPSPGMLTLIAKVNPVMK |
Secondary structure | LEEEEELLLEELLLHHHHLLLLLLLLLLLLLLLLLLLLEEEEEEEELLLLL |
PRMN | - |
PiMo | - |