Difference between revisions of "NONHSAT124922"

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sequence = <dnaseq>agagtcttctggagggacattacaaataatcaggcactcccagtgctgggagctaagttctgttacagggaagagaaagaaacaatgggaataccaaggaggatatttacagagggggaaggctttgagctgaaattgaacggtgaataaaggctgagcagccatggtgagatggggggagactcttctgaatggtgtggtggcggaagtgggggtgggggggatgcaacagtcttgttggactggaacatagAGTTCAAATGGCGGAATTTCAGAGCTTTGACGCTCTACTATTAAGAAGGTCCAGCAAGTTCTGCCGTGAACAGTTGTGCTCATAGctagctgtgtgatcttgaacaagtttctttgtctccaaaacctagttttgttacaggtagataggcaagagtgggctctcccccgacgcactagaaatgtcggatgacagttccacagttatcgcattgcctctctaaaaatcataattcagcagccagggagagacaatctcctgatggtccataaccttgacattaaaagtgttaactgaatacagatcccagggagaagcagattcttgggcatgtgtgttaagagataaaatggcaaagtatgactttccggggtacacgccacaggaaaaaggaaaaagtctcaggtgggcatgcgtgtaactccctaaacgcactgcgcgtgctcaattccaaaggctaaggaaagcattgcgcatgcgggaaacccacgctgagggaagaatcatgggaaagaggtgagcctgtaaagttttaggatcaaggttaaaggcccttttttgctctcttctctcttggaccttcaggcgacggcttgggtatcttccaagcgaattttcctttctttcctgttcttttttttttttgagacggagtcttgctctgtcgcccaggctggagtgcagtggcgtgatgtcggctcactgcaagctccgcctcccgggttcacgccattctcctgcttcagcctcctgagtagctggggctacaggcgcccgccaccacgcccggctaatttttttgtatttttttttttagtagagacggggttccaccgtgttagccaggatggtctcgatttcctgacctcgtcatcctcccgccttggcctcccaaagtgctgggattacaggcttgagccaccgcgccccgctctttcgtgttccaaaggctttttaaataaacttccactcctgtcctggattctgctttatggccctcagtcgaattctttcttctgaggaggcaaggactgaagttgcttctgaccagtacaggattgggaaggagaaagtcacttgactcacaggccaactgctatggactgaattgtgtcttcccctcattaatatgttgaaaccctatcctccctccaatgtgatggtatttgcagatggggcttttgggaagtaatgaagtttagatgaggcatgagggctggatggatatgatcagatgagtgcccaaagaagagacaccagagagctagcttcttctttctctttccacctttacacactgagaaaaggccaagtgagcacacaccaagaaggcagccatctgcaaacccaaggagagagtcctcactagacaccctgctggtaccttgatcttggacttctagcctccagaactgtgagaaataaattcctgttgttcaagctagtattaatacctggtgttttgttatggcagcctaagtgactaagacaccaacttaatttacttagccagggtcaatcagtggtagggcccaggattctg</dnaseq>|
 
sequence = <dnaseq>agagtcttctggagggacattacaaataatcaggcactcccagtgctgggagctaagttctgttacagggaagagaaagaaacaatgggaataccaaggaggatatttacagagggggaaggctttgagctgaaattgaacggtgaataaaggctgagcagccatggtgagatggggggagactcttctgaatggtgtggtggcggaagtgggggtgggggggatgcaacagtcttgttggactggaacatagAGTTCAAATGGCGGAATTTCAGAGCTTTGACGCTCTACTATTAAGAAGGTCCAGCAAGTTCTGCCGTGAACAGTTGTGCTCATAGctagctgtgtgatcttgaacaagtttctttgtctccaaaacctagttttgttacaggtagataggcaagagtgggctctcccccgacgcactagaaatgtcggatgacagttccacagttatcgcattgcctctctaaaaatcataattcagcagccagggagagacaatctcctgatggtccataaccttgacattaaaagtgttaactgaatacagatcccagggagaagcagattcttgggcatgtgtgttaagagataaaatggcaaagtatgactttccggggtacacgccacaggaaaaaggaaaaagtctcaggtgggcatgcgtgtaactccctaaacgcactgcgcgtgctcaattccaaaggctaaggaaagcattgcgcatgcgggaaacccacgctgagggaagaatcatgggaaagaggtgagcctgtaaagttttaggatcaaggttaaaggcccttttttgctctcttctctcttggaccttcaggcgacggcttgggtatcttccaagcgaattttcctttctttcctgttcttttttttttttgagacggagtcttgctctgtcgcccaggctggagtgcagtggcgtgatgtcggctcactgcaagctccgcctcccgggttcacgccattctcctgcttcagcctcctgagtagctggggctacaggcgcccgccaccacgcccggctaatttttttgtatttttttttttagtagagacggggttccaccgtgttagccaggatggtctcgatttcctgacctcgtcatcctcccgccttggcctcccaaagtgctgggattacaggcttgagccaccgcgccccgctctttcgtgttccaaaggctttttaaataaacttccactcctgtcctggattctgctttatggccctcagtcgaattctttcttctgaggaggcaaggactgaagttgcttctgaccagtacaggattgggaaggagaaagtcacttgactcacaggccaactgctatggactgaattgtgtcttcccctcattaatatgttgaaaccctatcctccctccaatgtgatggtatttgcagatggggcttttgggaagtaatgaagtttagatgaggcatgagggctggatggatatgatcagatgagtgcccaaagaagagacaccagagagctagcttcttctttctctttccacctttacacactgagaaaaggccaagtgagcacacaccaagaaggcagccatctgcaaacccaaggagagagtcctcactagacaccctgctggtaccttgatcttggacttctagcctccagaactgtgagaaataaattcctgttgttcaagctagtattaatacctggtgttttgttatggcagcctaagtgactaagacaccaacttaatttacttagccagggtcaatcagtggtagggcccaggattctg</dnaseq>|
 
}}
 
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[[Category:Intergenic]][[Category:NONHSAG049489]]
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[[Category:Intergenic]][[Category:NONHSAG049489]][[Category:Transcripts]]

Latest revision as of 06:52, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT124922

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1796 nt

Genomic location

chr8+:9045788..9051405

Exon number

2

Exons

9045788..9047096,9050919..9051405

Genome context

Sequence
000001 agagtcttct ggagggacat tacaaataat caggcactcc cagtgctggg agctaagttc tgttacaggg aagagaaaga 000080
000081 aacaatggga ataccaagga ggatatttac agagggggaa ggctttgagc tgaaattgaa cggtgaataa aggctgagca 000160
000161 gccatggtga gatgggggga gactcttctg aatggtgtgg tggcggaagt gggggtgggg gggatgcaac agtcttgttg 000240
000241 gactggaaca tagAGTTCAA ATGGCGGAAT TTCAGAGCTT TGACGCTCTA CTATTAAGAA GGTCCAGCAA GTTCTGCCGT 000320
000321 GAACAGTTGT GCTCATAGct agctgtgtga tcttgaacaa gtttctttgt ctccaaaacc tagttttgtt acaggtagat 000400
000401 aggcaagagt gggctctccc ccgacgcact agaaatgtcg gatgacagtt ccacagttat cgcattgcct ctctaaaaat 000480
000481 cataattcag cagccaggga gagacaatct cctgatggtc cataaccttg acattaaaag tgttaactga atacagatcc 000560
000561 cagggagaag cagattcttg ggcatgtgtg ttaagagata aaatggcaaa gtatgacttt ccggggtaca cgccacagga 000640
000641 aaaaggaaaa agtctcaggt gggcatgcgt gtaactccct aaacgcactg cgcgtgctca attccaaagg ctaaggaaag 000720
000721 cattgcgcat gcgggaaacc cacgctgagg gaagaatcat gggaaagagg tgagcctgta aagttttagg atcaaggtta 000800
000801 aaggcccttt tttgctctct tctctcttgg accttcaggc gacggcttgg gtatcttcca agcgaatttt cctttctttc 000880
000881 ctgttctttt ttttttttga gacggagtct tgctctgtcg cccaggctgg agtgcagtgg cgtgatgtcg gctcactgca 000960
000961 agctccgcct cccgggttca cgccattctc ctgcttcagc ctcctgagta gctggggcta caggcgcccg ccaccacgcc 001040
001041 cggctaattt ttttgtattt ttttttttag tagagacggg gttccaccgt gttagccagg atggtctcga tttcctgacc 001120
001121 tcgtcatcct cccgccttgg cctcccaaag tgctgggatt acaggcttga gccaccgcgc cccgctcttt cgtgttccaa 001200
001201 aggcttttta aataaacttc cactcctgtc ctggattctg ctttatggcc ctcagtcgaa ttctttcttc tgaggaggca 001280
001281 aggactgaag ttgcttctga ccagtacagg attgggaagg agaaagtcac ttgactcaca ggccaactgc tatggactga 001360
001361 attgtgtctt cccctcatta atatgttgaa accctatcct ccctccaatg tgatggtatt tgcagatggg gcttttggga 001440
001441 agtaatgaag tttagatgag gcatgagggc tggatggata tgatcagatg agtgcccaaa gaagagacac cagagagcta 001520
001521 gcttcttctt tctctttcca cctttacaca ctgagaaaag gccaagtgag cacacaccaa gaaggcagcc atctgcaaac 001600
001601 ccaaggagag agtcctcact agacaccctg ctggtacctt gatcttggac ttctagcctc cagaactgtg agaaataaat 001680
001681 tcctgttgtt caagctagta ttaatacctg gtgttttgtt atggcagcct aagtgactaa gacaccaact taatttactt 001760
001761 agccagggtc aatcagtggt agggcccagg attctg
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Predicted Small Protein

Name NONHSAT124922_smProtein_191:337
Length 49
Molecular weight 5733.6151
Aromaticity 0.145833333333
Instability index 54.69375
Isoelectric point 9.14849853516
Runs 9
Runs residual 0.0219298245614
Runs probability 0.0374197727139
Amino acid sequence MVWWRKWGWGGCNSLVGLEHRVQMAEFQSFDALLLRRSSKFCREQLCS
Secondary structure LEEEEELLLLLLLLHHHHHHHHHHHHHHLHHHHHHHHLHHHHHHHHLL
PRMN -
PiMo -