Difference between revisions of "NONHSAT030590"
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sequence = <dnaseq>CAGCAGTTATTATGGCAAAACTACTAGTTTAACTTAGGTTTTTCCCAAAAGAAGCTACTTACTTTGAAAATAAAACTAGAAATCAGATTATTGGGCTGCTACTTAATGCATAATAATTTACAAAATGAAGAAGTCAGGTTAAAAGGCTTTGCACAGCTATTGTTCACATTTACAGCCTTGGCTCAAACCCTGGTCTCTGACCAAAGAAAGATCTGCTTATAACCATATATTCCAAGGCTCAGCCCCTTTTCTCTATCTTTCTTTGATGGTAGATTTCAGAGTAAGCAGTGGCAGAACAGCAATTACTTAAAGCTACAGCTTTGCAGTACACTTTAAGGTCACATGATTGGGCATTTGTTCCACCAGACTTGGGTAAAACAAGTGTGTTCATTTCAACATCAAAGTCAAGGTCTGCATCGGGTGAGTGCAGGACGGACCGTACAGTTCAAGCTGCCCCTTGCACCCTGACGCCCAGAGCCTGGAGAGCCTGCACAGAATATTCTGTTGAGAGTGAGTTACTGAGTCCTCAGGGTGCAGCCTGGGCCCAGCAGAAGAGTGATCACCTGGGCTTCCTGCACTGTGAGCTGCTGCCAAGGCACTGTTTGGTGTGTCTGCCAGCTCACCCCCAGCAGAGGAAGTGCGGTCTTAGCCTTACCTCAGATGACCTTTTGGAAAGGTCTGATTCCAAATCTTACCTCTGATGAGTCGGTTTGAATTTGGTATCCATTTTTCTAAATTAAAAATATAGCTTAAAACATAGGTACTACTGTGTCATCAAAATTCCTTTGGCCCTGGGCTGCATTCAGAGACTTACCTGAAAAGGGAAGAAAGTGCTCAATATATACTTTTTGTATTAGGCTATTGGAAATGAATAAATTCAGAATATGGACCTAGAGCAACATGACAATACTAGATGCCAGCTGTAGTTATATGTTTTTTAAAAAGTCAAAAGCTGCTTTCTCCTTTTCGTGAAAAGGGCTgaactttggtggtcatcaaatctaacccttcacttcacaaatgaggaaactgaggttcagagagACTGCAGCCCCATAGTCAGCCCTTCCTTCCTAAGCCAGGTGTCAACTCAGGGCAGGGATTATTTTTTTATACAGCCCCAAGCTCCCACCTGTAAACCTTAAGAGCTCTGCATGGGCAATAAATAAACAGATGAAAGTAACCGTCCACAGTGGATCCTTGTGTAAGAAAAAGTTTTCCACAGAGCAGAGGAATCAGGTGTTGCAAAGATCCAGCTCAGTTCTGGCTATTCACAGAGTTTTATAATACAGTGTAATTACATCTCAGTCCAATATACAAAAGATAAAAGCAACAAGTAAGCTCTTCACTTATAACTGACAAAGTAGTGAAAGAGTTTCCCCAGGGGGCAGATTTGGCAGATGAGCCTTTACTCCATAGAAAGAATTGAAAGATTAGAAAAGGCATAGAAAAAGGAAGGTGTTCTTTAGGCATCATTTACCTGTTCTCTTGCTATCCTTTGAGTAGCCTGGAAGGAATATTTCACAATGGACGTGCTACAAAAGCAATCGAAAGTGAAAGGCACTTTTTCTTCTAAATTGTTGCCTTTAATAATTTCATTAATTCTTGTCAACAATTTTTATGGGCCTGCTTATTAAAAATAAAAGATCTAAGTGGAAACGTTGATTAGACAAAGGTACCTCCCCTCTGAGAACACCTAACATTACAATATGAAAACGGTGGCTTCAAGAATCTGAGTTCTTTTAATTACCTGTATCAGATGAGTAAAAAGACACTCCGGACATAATGAATGCTTTCTTAACACAACAGAACCACCTACACACATGAACAGGACTGTTCAGGGAGCCTGGTTTGGTGTGAACTGGGGCTGGCTCCCAGGTGGAGCCTGCTCTTAGAACACACCAGAAGGCTGGAAGGCTCTAGTGGGGCCGCTTGCACACGCAACAGTACAGTTTTACTTTTTTCCTGGACAGTGCAGACAGTGCCATCAGCTCTAGCCTTGCAGGAGGGCACAGTCATTCTTCAGACTTGCACTCCTGGCTCTGGTGCTGCATCCTGGAAAGGACGCGCTCGTAGAACAGCAGGTAGGCGCTGGAGGACAGGACCTCCTGCAGGCTGGCCTTGCGGACAGTGTCATCGGAGACCCACAGCCACTGATTGCTAGTTGAGAGAGGGTTCCTGGCAGAAGGTGGGGACCGTCGGTAAGTGACAAAGTGTCCAGAGTGCATGTCTCCATGGTGGACGACAACTGCCATCAGCCGGAAGAGTCTTAAGAAAACAACAATTTCCTCCTAAGGATGACTGTGGTAATATGCAATA</dnaseq>| | sequence = <dnaseq>CAGCAGTTATTATGGCAAAACTACTAGTTTAACTTAGGTTTTTCCCAAAAGAAGCTACTTACTTTGAAAATAAAACTAGAAATCAGATTATTGGGCTGCTACTTAATGCATAATAATTTACAAAATGAAGAAGTCAGGTTAAAAGGCTTTGCACAGCTATTGTTCACATTTACAGCCTTGGCTCAAACCCTGGTCTCTGACCAAAGAAAGATCTGCTTATAACCATATATTCCAAGGCTCAGCCCCTTTTCTCTATCTTTCTTTGATGGTAGATTTCAGAGTAAGCAGTGGCAGAACAGCAATTACTTAAAGCTACAGCTTTGCAGTACACTTTAAGGTCACATGATTGGGCATTTGTTCCACCAGACTTGGGTAAAACAAGTGTGTTCATTTCAACATCAAAGTCAAGGTCTGCATCGGGTGAGTGCAGGACGGACCGTACAGTTCAAGCTGCCCCTTGCACCCTGACGCCCAGAGCCTGGAGAGCCTGCACAGAATATTCTGTTGAGAGTGAGTTACTGAGTCCTCAGGGTGCAGCCTGGGCCCAGCAGAAGAGTGATCACCTGGGCTTCCTGCACTGTGAGCTGCTGCCAAGGCACTGTTTGGTGTGTCTGCCAGCTCACCCCCAGCAGAGGAAGTGCGGTCTTAGCCTTACCTCAGATGACCTTTTGGAAAGGTCTGATTCCAAATCTTACCTCTGATGAGTCGGTTTGAATTTGGTATCCATTTTTCTAAATTAAAAATATAGCTTAAAACATAGGTACTACTGTGTCATCAAAATTCCTTTGGCCCTGGGCTGCATTCAGAGACTTACCTGAAAAGGGAAGAAAGTGCTCAATATATACTTTTTGTATTAGGCTATTGGAAATGAATAAATTCAGAATATGGACCTAGAGCAACATGACAATACTAGATGCCAGCTGTAGTTATATGTTTTTTAAAAAGTCAAAAGCTGCTTTCTCCTTTTCGTGAAAAGGGCTgaactttggtggtcatcaaatctaacccttcacttcacaaatgaggaaactgaggttcagagagACTGCAGCCCCATAGTCAGCCCTTCCTTCCTAAGCCAGGTGTCAACTCAGGGCAGGGATTATTTTTTTATACAGCCCCAAGCTCCCACCTGTAAACCTTAAGAGCTCTGCATGGGCAATAAATAAACAGATGAAAGTAACCGTCCACAGTGGATCCTTGTGTAAGAAAAAGTTTTCCACAGAGCAGAGGAATCAGGTGTTGCAAAGATCCAGCTCAGTTCTGGCTATTCACAGAGTTTTATAATACAGTGTAATTACATCTCAGTCCAATATACAAAAGATAAAAGCAACAAGTAAGCTCTTCACTTATAACTGACAAAGTAGTGAAAGAGTTTCCCCAGGGGGCAGATTTGGCAGATGAGCCTTTACTCCATAGAAAGAATTGAAAGATTAGAAAAGGCATAGAAAAAGGAAGGTGTTCTTTAGGCATCATTTACCTGTTCTCTTGCTATCCTTTGAGTAGCCTGGAAGGAATATTTCACAATGGACGTGCTACAAAAGCAATCGAAAGTGAAAGGCACTTTTTCTTCTAAATTGTTGCCTTTAATAATTTCATTAATTCTTGTCAACAATTTTTATGGGCCTGCTTATTAAAAATAAAAGATCTAAGTGGAAACGTTGATTAGACAAAGGTACCTCCCCTCTGAGAACACCTAACATTACAATATGAAAACGGTGGCTTCAAGAATCTGAGTTCTTTTAATTACCTGTATCAGATGAGTAAAAAGACACTCCGGACATAATGAATGCTTTCTTAACACAACAGAACCACCTACACACATGAACAGGACTGTTCAGGGAGCCTGGTTTGGTGTGAACTGGGGCTGGCTCCCAGGTGGAGCCTGCTCTTAGAACACACCAGAAGGCTGGAAGGCTCTAGTGGGGCCGCTTGCACACGCAACAGTACAGTTTTACTTTTTTCCTGGACAGTGCAGACAGTGCCATCAGCTCTAGCCTTGCAGGAGGGCACAGTCATTCTTCAGACTTGCACTCCTGGCTCTGGTGCTGCATCCTGGAAAGGACGCGCTCGTAGAACAGCAGGTAGGCGCTGGAGGACAGGACCTCCTGCAGGCTGGCCTTGCGGACAGTGTCATCGGAGACCCACAGCCACTGATTGCTAGTTGAGAGAGGGTTCCTGGCAGAAGGTGGGGACCGTCGGTAAGTGACAAAGTGTCCAGAGTGCATGTCTCCATGGTGGACGACAACTGCCATCAGCCGGAAGAGTCTTAAGAAAACAACAATTTCCTCCTAAGGATGACTGTGGTAATATGCAATA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:NONHSAG012232]] | + | [[Category:Antisense]][[Category:NONHSAG012232]][[Category:Transcripts]] |
Latest revision as of 21:11, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT030590 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2319 nt |
Genomic location |
chr12-:109510482..109525751 |
Exon number |
2 |
Exons |
109510482..109510533,109523485..109525751 |
Genome context |
|
Sequence |
000001 CAGCAGTTAT TATGGCAAAA CTACTAGTTT AACTTAGGTT TTTCCCAAAA GAAGCTACTT ACTTTGAAAA TAAAACTAGA 000080
000081 AATCAGATTA TTGGGCTGCT ACTTAATGCA TAATAATTTA CAAAATGAAG AAGTCAGGTT AAAAGGCTTT GCACAGCTAT 000160 000161 TGTTCACATT TACAGCCTTG GCTCAAACCC TGGTCTCTGA CCAAAGAAAG ATCTGCTTAT AACCATATAT TCCAAGGCTC 000240 000241 AGCCCCTTTT CTCTATCTTT CTTTGATGGT AGATTTCAGA GTAAGCAGTG GCAGAACAGC AATTACTTAA AGCTACAGCT 000320 000321 TTGCAGTACA CTTTAAGGTC ACATGATTGG GCATTTGTTC CACCAGACTT GGGTAAAACA AGTGTGTTCA TTTCAACATC 000400 000401 AAAGTCAAGG TCTGCATCGG GTGAGTGCAG GACGGACCGT ACAGTTCAAG CTGCCCCTTG CACCCTGACG CCCAGAGCCT 000480 000481 GGAGAGCCTG CACAGAATAT TCTGTTGAGA GTGAGTTACT GAGTCCTCAG GGTGCAGCCT GGGCCCAGCA GAAGAGTGAT 000560 000561 CACCTGGGCT TCCTGCACTG TGAGCTGCTG CCAAGGCACT GTTTGGTGTG TCTGCCAGCT CACCCCCAGC AGAGGAAGTG 000640 000641 CGGTCTTAGC CTTACCTCAG ATGACCTTTT GGAAAGGTCT GATTCCAAAT CTTACCTCTG ATGAGTCGGT TTGAATTTGG 000720 000721 TATCCATTTT TCTAAATTAA AAATATAGCT TAAAACATAG GTACTACTGT GTCATCAAAA TTCCTTTGGC CCTGGGCTGC 000800 000801 ATTCAGAGAC TTACCTGAAA AGGGAAGAAA GTGCTCAATA TATACTTTTT GTATTAGGCT ATTGGAAATG AATAAATTCA 000880 000881 GAATATGGAC CTAGAGCAAC ATGACAATAC TAGATGCCAG CTGTAGTTAT ATGTTTTTTA AAAAGTCAAA AGCTGCTTTC 000960 000961 TCCTTTTCGT GAAAAGGGCT gaactttggt ggtcatcaaa tctaaccctt cacttcacaa atgaggaaac tgaggttcag 001040 001041 agagACTGCA GCCCCATAGT CAGCCCTTCC TTCCTAAGCC AGGTGTCAAC TCAGGGCAGG GATTATTTTT TTATACAGCC 001120 001121 CCAAGCTCCC ACCTGTAAAC CTTAAGAGCT CTGCATGGGC AATAAATAAA CAGATGAAAG TAACCGTCCA CAGTGGATCC 001200 001201 TTGTGTAAGA AAAAGTTTTC CACAGAGCAG AGGAATCAGG TGTTGCAAAG ATCCAGCTCA GTTCTGGCTA TTCACAGAGT 001280 001281 TTTATAATAC AGTGTAATTA CATCTCAGTC CAATATACAA AAGATAAAAG CAACAAGTAA GCTCTTCACT TATAACTGAC 001360 001361 AAAGTAGTGA AAGAGTTTCC CCAGGGGGCA GATTTGGCAG ATGAGCCTTT ACTCCATAGA AAGAATTGAA AGATTAGAAA 001440 001441 AGGCATAGAA AAAGGAAGGT GTTCTTTAGG CATCATTTAC CTGTTCTCTT GCTATCCTTT GAGTAGCCTG GAAGGAATAT 001520 001521 TTCACAATGG ACGTGCTACA AAAGCAATCG AAAGTGAAAG GCACTTTTTC TTCTAAATTG TTGCCTTTAA TAATTTCATT 001600 001601 AATTCTTGTC AACAATTTTT ATGGGCCTGC TTATTAAAAA TAAAAGATCT AAGTGGAAAC GTTGATTAGA CAAAGGTACC 001680 001681 TCCCCTCTGA GAACACCTAA CATTACAATA TGAAAACGGT GGCTTCAAGA ATCTGAGTTC TTTTAATTAC CTGTATCAGA 001760 001761 TGAGTAAAAA GACACTCCGG ACATAATGAA TGCTTTCTTA ACACAACAGA ACCACCTACA CACATGAACA GGACTGTTCA 001840 001841 GGGAGCCTGG TTTGGTGTGA ACTGGGGCTG GCTCCCAGGT GGAGCCTGCT CTTAGAACAC ACCAGAAGGC TGGAAGGCTC 001920 001921 TAGTGGGGCC GCTTGCACAC GCAACAGTAC AGTTTTACTT TTTTCCTGGA CAGTGCAGAC AGTGCCATCA GCTCTAGCCT 002000 002001 TGCAGGAGGG CACAGTCATT CTTCAGACTT GCACTCCTGG CTCTGGTGCT GCATCCTGGA AAGGACGCGC TCGTAGAACA 002080 002081 GCAGGTAGGC GCTGGAGGAC AGGACCTCCT GCAGGCTGGC CTTGCGGACA GTGTCATCGG AGACCCACAG CCACTGATTG 002160 002161 CTAGTTGAGA GAGGGTTCCT GGCAGAAGGT GGGGACCGTC GGTAAGTGAC AAAGTGTCCA GAGTGCATGT CTCCATGGTG 002240 002241 GACGACAACT GCCATCAGCC GGAAGAGTCT TAAGAAAACA ACAATTTCCT CCTAAGGATG ACTGTGGTAA TATGCAATA |
Predicted Small Protein
Name | NONHSAT030590_smProtein_1526:1636 |
Length | 37 |
Molecular weight | 4026.7809 |
Aromaticity | 0.111111111111 |
Instability index | 54.6669444444 |
Isoelectric point | 9.69964599609 |
Runs | 7 |
Runs residual | 0.013986013986 |
Runs probability | 0.0311025311025 |
Amino acid sequence | MDVLQKQSKVKGTFSSKLLPLIISLILVNNFYGPAY |
Secondary structure | LLHHHHLLLEEELLLHHHHHHHHHHHHHHLLLLLLL |
PRMN | - |
PiMo | - |