Difference between revisions of "Lnc-CHST12-1:6"

From LncRNAWiki
Jump to: navigation, search
 
Line 42: Line 42:
 
sequence = <dnaseq>TGGGTCTCTGGCGGACAGTCAGTCTCATTTCCAGATGGGGAAAGGGAGACCCAGGCTGCGGTGACCCACTGAGGCACAGGATCAGTGAGAACCCAGCCCTGGCTTTGCCCAGACCTCTCAAGGGCACTTCGTGGGACCATTGCCGGCCGTTGTGGCATCTGTCCCTGGCCTTGCCCCCATCCGTCTCTGCACAGCCCAGGTGGGTCCGAGCCAGCCCCAGGTCTCCAGGGTCCCAGCCCAGCCTCTAGAAGAGCCAGCAGCAGGGCTGGAAGGGAGAGCACATGCTGGGCCTTGGGGCTGCCTTGGACCTCAGGCCGTTGACAAGGAAAAGCGGAGAGTTGGGAAAAAAGGACAAATAGCTGAGCGCCAGCCGCAGTCTGGGGGACGGGAGCCTCGTGCGACTCTCGGAGTGCTGGCCAGATTGGCAGAGGGGAGGAGAGAGGAAAAACCCAGGCTCTGAGGAAAAACCTCTCCAGCCCAGCGCGTGGCCTGGCATTAACCCACTGCAGCCCCAGGAAGTGGTTCCACCCCAGGCAGCCAACAAGGCGGTGCCTGAACTATGTCTGTGGATGACGGAGCCACGACCTGTCCCTCAGGGCTCAGCGCTGCGGCTATGTCCAGGGACCCCTGGCTGTGCCCACGTCGGGGCTTCCCGTTCCTTACCTGCCATGAGAATGAGATGTCCAGGGACCTCCCTGCTCCAGCTGGGACCTGTGGGGCTTTGTCTGTTGTCCCGAGCACCTTGGAGATGTCATTTCTAACATTTTAACCCAGGAATCCCCCCACCAAGGGACAGAGTGCAAGGACATGATCGAACAGAAAAAGTTCTGGTACAAGATCAACCCCGTGGGGTGGTGAGTGCTGCAGCCCCGGGCCTCACATCCTGCCGTCCCTGTGGGAGATTGGAGCGGTCCCAGTGCCCACCGCTGATTCTCTGGCTCCAGCAACCCCTCCAGGTGGATCCGTCCCACGCAGCCTGGCCTGAAACACTGCCCAGCCACTGGGTCCAGTAAGACAGAGCCTCGAGTCATTCTGCCAAGAGGATCCAGAAACACAGACTTTTTCTGGGGTCCTGGAGGCTTCTGGCCCATGGGGAGCCCCTGGGTCCCAGCGATCCAGCCCTGATGTGCTGAGGGTGCAGGGCCCAGCTGCAGAGCAGAGGAGAGTGGCCCCCAGGGACCAGCAGCACGAAAGGCACACTGAGGCACACTGGCAGGCCTGGGCTGCAGAGAGCCTGAAGGTCATGGGGTAGCTGGTGGAAGCAGGAAGACCCCATACAGCAGCGACCACTGAGGCTGGTGCTGCACTTTCTCAGGGAATTGAGTGTGGGCTCCCACCATCCCGGCCACTGGCTTCCTCCAAAGCCTCCTCCTCTTACATCAGCAAACCTTCTGTTCGGTGACCCCCTCAGTGACCCTCTGTGCTTGCCTTCGTGGTCTTCCTCATGGAGGATTTCGGGTCAGCGTGGGGGTCAGAGGTCATTTCCCATACCCCCTCAAAGGTACTTCTTGCTGTGGTCCCCACACTCTGACACCCTCTTCTGAAATGAACACTTTTTTGTTGTTGTTGTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTTAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTTTCATGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGCATGTGCCACCAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTTCTGACCTCAAGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACTGCGCCCGGCCACAAACACTTTTTTTTTTTTAAACAAGTGAAAACAAGTTTATTAACAAAGTTAAGAAATAAAGAATGGCTATTCCATAGGGAGAGCAGCCTGAATAAACACTTTTTTTGTTGTTGTTGAGGCAGAGCCTCACTCTGTCGCCCAGGCAGGAGTGCAGTGGTGCGACCTCAGCTCTCAGCTCCCTGCACCGTCCACCTCCTGGGTTCAAGCGCTTCTTCCCCAAGTAGCTGGGACTATAGGCACACACCACCATGCCCGGCTAATTTTTCTCTTTTTAGTAGAGACAGGATTTCGCCATGTGGGTCGGGCTGGTCTCGAACTCCTGGTCTCAAGTGATCCGCCCTCCTCGGCCTTCCAAAATGCTAGGATTACAGGCATGAGCCGCCGTGCCTGGCCACAAACATATTTTAAATTTGAACAATAAAGGAACTGGACCAGGAAGTGTGGAGTTGGGGAGACCCTGCTCTCGCCAGGTGCCTTCCCGGCAGGTTGTCTCTGCCTCCCCTTGCACCCCTTGAATGGCGGGCTCCCTCTCCCATAGCCCCTGCCAGGCTGGATAACCAACTTCATTCTTATACCCGTCCGAATCTGCCCCCTGTTAATGGCACCCACCAGTCCTTGTCCAAACCTCGAAGCTCAGGACCTCACAGAGCACCA</dnaseq>|
 
sequence = <dnaseq>TGGGTCTCTGGCGGACAGTCAGTCTCATTTCCAGATGGGGAAAGGGAGACCCAGGCTGCGGTGACCCACTGAGGCACAGGATCAGTGAGAACCCAGCCCTGGCTTTGCCCAGACCTCTCAAGGGCACTTCGTGGGACCATTGCCGGCCGTTGTGGCATCTGTCCCTGGCCTTGCCCCCATCCGTCTCTGCACAGCCCAGGTGGGTCCGAGCCAGCCCCAGGTCTCCAGGGTCCCAGCCCAGCCTCTAGAAGAGCCAGCAGCAGGGCTGGAAGGGAGAGCACATGCTGGGCCTTGGGGCTGCCTTGGACCTCAGGCCGTTGACAAGGAAAAGCGGAGAGTTGGGAAAAAAGGACAAATAGCTGAGCGCCAGCCGCAGTCTGGGGGACGGGAGCCTCGTGCGACTCTCGGAGTGCTGGCCAGATTGGCAGAGGGGAGGAGAGAGGAAAAACCCAGGCTCTGAGGAAAAACCTCTCCAGCCCAGCGCGTGGCCTGGCATTAACCCACTGCAGCCCCAGGAAGTGGTTCCACCCCAGGCAGCCAACAAGGCGGTGCCTGAACTATGTCTGTGGATGACGGAGCCACGACCTGTCCCTCAGGGCTCAGCGCTGCGGCTATGTCCAGGGACCCCTGGCTGTGCCCACGTCGGGGCTTCCCGTTCCTTACCTGCCATGAGAATGAGATGTCCAGGGACCTCCCTGCTCCAGCTGGGACCTGTGGGGCTTTGTCTGTTGTCCCGAGCACCTTGGAGATGTCATTTCTAACATTTTAACCCAGGAATCCCCCCACCAAGGGACAGAGTGCAAGGACATGATCGAACAGAAAAAGTTCTGGTACAAGATCAACCCCGTGGGGTGGTGAGTGCTGCAGCCCCGGGCCTCACATCCTGCCGTCCCTGTGGGAGATTGGAGCGGTCCCAGTGCCCACCGCTGATTCTCTGGCTCCAGCAACCCCTCCAGGTGGATCCGTCCCACGCAGCCTGGCCTGAAACACTGCCCAGCCACTGGGTCCAGTAAGACAGAGCCTCGAGTCATTCTGCCAAGAGGATCCAGAAACACAGACTTTTTCTGGGGTCCTGGAGGCTTCTGGCCCATGGGGAGCCCCTGGGTCCCAGCGATCCAGCCCTGATGTGCTGAGGGTGCAGGGCCCAGCTGCAGAGCAGAGGAGAGTGGCCCCCAGGGACCAGCAGCACGAAAGGCACACTGAGGCACACTGGCAGGCCTGGGCTGCAGAGAGCCTGAAGGTCATGGGGTAGCTGGTGGAAGCAGGAAGACCCCATACAGCAGCGACCACTGAGGCTGGTGCTGCACTTTCTCAGGGAATTGAGTGTGGGCTCCCACCATCCCGGCCACTGGCTTCCTCCAAAGCCTCCTCCTCTTACATCAGCAAACCTTCTGTTCGGTGACCCCCTCAGTGACCCTCTGTGCTTGCCTTCGTGGTCTTCCTCATGGAGGATTTCGGGTCAGCGTGGGGGTCAGAGGTCATTTCCCATACCCCCTCAAAGGTACTTCTTGCTGTGGTCCCCACACTCTGACACCCTCTTCTGAAATGAACACTTTTTTGTTGTTGTTGTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTTAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTTTCATGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGCATGTGCCACCAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTTCTGACCTCAAGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACTGCGCCCGGCCACAAACACTTTTTTTTTTTTAAACAAGTGAAAACAAGTTTATTAACAAAGTTAAGAAATAAAGAATGGCTATTCCATAGGGAGAGCAGCCTGAATAAACACTTTTTTTGTTGTTGTTGAGGCAGAGCCTCACTCTGTCGCCCAGGCAGGAGTGCAGTGGTGCGACCTCAGCTCTCAGCTCCCTGCACCGTCCACCTCCTGGGTTCAAGCGCTTCTTCCCCAAGTAGCTGGGACTATAGGCACACACCACCATGCCCGGCTAATTTTTCTCTTTTTAGTAGAGACAGGATTTCGCCATGTGGGTCGGGCTGGTCTCGAACTCCTGGTCTCAAGTGATCCGCCCTCCTCGGCCTTCCAAAATGCTAGGATTACAGGCATGAGCCGCCGTGCCTGGCCACAAACATATTTTAAATTTGAACAATAAAGGAACTGGACCAGGAAGTGTGGAGTTGGGGAGACCCTGCTCTCGCCAGGTGCCTTCCCGGCAGGTTGTCTCTGCCTCCCCTTGCACCCCTTGAATGGCGGGCTCCCTCTCCCATAGCCCCTGCCAGGCTGGATAACCAACTTCATTCTTATACCCGTCCGAATCTGCCCCCTGTTAATGGCACCCACCAGTCCTTGTCCAAACCTCGAAGCTCAGGACCTCACAGAGCACCA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-CHST12-1]][[Category:NONHSAG046798]]
+
[[Category:Intergenic]][[Category:lnc-CHST12-1]][[Category:NONHSAG046798]][[Category:Transcripts]]

Latest revision as of 03:57, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

lnc-CHST12-1:6

Source

LNCipedia2.1

Same with

NONHSAT118805

Classification

intergenic

Length

2509 nt

Genomic location

chr7+:2483360..2488063

Exon number

2

Exons

2483360..2483381,2485577..2488063

Genome context

Sequence
000001 TGGGTCTCTG GCGGACAGTC AGTCTCATTT CCAGATGGGG AAAGGGAGAC CCAGGCTGCG GTGACCCACT GAGGCACAGG 000080
000081 ATCAGTGAGA ACCCAGCCCT GGCTTTGCCC AGACCTCTCA AGGGCACTTC GTGGGACCAT TGCCGGCCGT TGTGGCATCT 000160
000161 GTCCCTGGCC TTGCCCCCAT CCGTCTCTGC ACAGCCCAGG TGGGTCCGAG CCAGCCCCAG GTCTCCAGGG TCCCAGCCCA 000240
000241 GCCTCTAGAA GAGCCAGCAG CAGGGCTGGA AGGGAGAGCA CATGCTGGGC CTTGGGGCTG CCTTGGACCT CAGGCCGTTG 000320
000321 ACAAGGAAAA GCGGAGAGTT GGGAAAAAAG GACAAATAGC TGAGCGCCAG CCGCAGTCTG GGGGACGGGA GCCTCGTGCG 000400
000401 ACTCTCGGAG TGCTGGCCAG ATTGGCAGAG GGGAGGAGAG AGGAAAAACC CAGGCTCTGA GGAAAAACCT CTCCAGCCCA 000480
000481 GCGCGTGGCC TGGCATTAAC CCACTGCAGC CCCAGGAAGT GGTTCCACCC CAGGCAGCCA ACAAGGCGGT GCCTGAACTA 000560
000561 TGTCTGTGGA TGACGGAGCC ACGACCTGTC CCTCAGGGCT CAGCGCTGCG GCTATGTCCA GGGACCCCTG GCTGTGCCCA 000640
000641 CGTCGGGGCT TCCCGTTCCT TACCTGCCAT GAGAATGAGA TGTCCAGGGA CCTCCCTGCT CCAGCTGGGA CCTGTGGGGC 000720
000721 TTTGTCTGTT GTCCCGAGCA CCTTGGAGAT GTCATTTCTA ACATTTTAAC CCAGGAATCC CCCCACCAAG GGACAGAGTG 000800
000801 CAAGGACATG ATCGAACAGA AAAAGTTCTG GTACAAGATC AACCCCGTGG GGTGGTGAGT GCTGCAGCCC CGGGCCTCAC 000880
000881 ATCCTGCCGT CCCTGTGGGA GATTGGAGCG GTCCCAGTGC CCACCGCTGA TTCTCTGGCT CCAGCAACCC CTCCAGGTGG 000960
000961 ATCCGTCCCA CGCAGCCTGG CCTGAAACAC TGCCCAGCCA CTGGGTCCAG TAAGACAGAG CCTCGAGTCA TTCTGCCAAG 001040
001041 AGGATCCAGA AACACAGACT TTTTCTGGGG TCCTGGAGGC TTCTGGCCCA TGGGGAGCCC CTGGGTCCCA GCGATCCAGC 001120
001121 CCTGATGTGC TGAGGGTGCA GGGCCCAGCT GCAGAGCAGA GGAGAGTGGC CCCCAGGGAC CAGCAGCACG AAAGGCACAC 001200
001201 TGAGGCACAC TGGCAGGCCT GGGCTGCAGA GAGCCTGAAG GTCATGGGGT AGCTGGTGGA AGCAGGAAGA CCCCATACAG 001280
001281 CAGCGACCAC TGAGGCTGGT GCTGCACTTT CTCAGGGAAT TGAGTGTGGG CTCCCACCAT CCCGGCCACT GGCTTCCTCC 001360
001361 AAAGCCTCCT CCTCTTACAT CAGCAAACCT TCTGTTCGGT GACCCCCTCA GTGACCCTCT GTGCTTGCCT TCGTGGTCTT 001440
001441 CCTCATGGAG GATTTCGGGT CAGCGTGGGG GTCAGAGGTC ATTTCCCATA CCCCCTCAAA GGTACTTCTT GCTGTGGTCC 001520
001521 CCACACTCTG ACACCCTCTT CTGAAATGAA CACTTTTTTG TTGTTGTTGT TGAGACAGAG TCTTGCTCTG TCGCCCAGGC 001600
001601 TGGAGTGCAG TGGCACAATC TTAGCTCACT GCAACCTCCA CCTCCCAGGT TCAAGCGATT TTCATGCCTC AGCTTCCCGA 001680
001681 GTAGCTGGGA TTACAGGCAT GTGCCACCAA GCCCAGCTAA TTTTTGTATT TTTAGTAGAG ATGAGGTTTC ACCATGTTGG 001760
001761 CCAGGCTGGT CTCGAACTTC TGACCTCAAG TGATTCGCCC GCCTCGGCCT CCCAAAGTGC TGGGATTACA AGCATGAGCC 001840
001841 ACTGCGCCCG GCCACAAACA CTTTTTTTTT TTTAAACAAG TGAAAACAAG TTTATTAACA AAGTTAAGAA ATAAAGAATG 001920
001921 GCTATTCCAT AGGGAGAGCA GCCTGAATAA ACACTTTTTT TGTTGTTGTT GAGGCAGAGC CTCACT