Difference between revisions of "NONHSAT030969"
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sequence = <dnaseq>ATAGAGCCCAGTTCCTGTTTTTTTGTTCGTTTTTTTTTTTTTTTTTTTTTTAGCCGCCTTCATTTGGATACTGGGGACTTCTTTTCCACTTCTTCTTCTTCTTCTATTTTATTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGAGCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCACCACGCTCGGCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTTACCATGTTGGCCAGAGTGGTTTTGAACTCCTGGCCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGAGCTCAGCCTCCACTTCTTATTTTGATTCTTTTCTGTTTTGATGGTGAGAGGAAAGGGTGATTTACCCAATACTGTCACAGAAAAATGAAACTGTGACTGGTTTTCACAATGTATGTAGCTGATCTCATGTTCTCCTATTATTATGTTTCTGACAGTGATAAAATATCACTCTCCCTCCCTGGGGCATTAGAGGAGTCCTCACCCACCCACCTCCTACACAAGTATCTTTTAGGGACAGTGGCTCACCATTGTGGACTTTTTGAGTGTCCACCTGATATTACAAGTTGCATTGACCAGAACACAGATTTTGCTCTTCTGTGTCAATACCCATTTCTTTTCTGAAGGTCAGAAGTTGGTTAAGGGTTTGGGGGACCAGCTAGACACTCTTCTTAGTCCCATGGAGCTGACTGGAAGTTCCATGAGGGGAGGAAATTGATGTCAAAGTGTCATTTTAAAGCTTAAGCTGAAAGTTTATTTTTTAAATTCTCATTCATTCATTTAGCATATATTGATTGAGCATCTACAATGTGCCAGTTGTAGAATTCCATCTCAGAAGAGACTTGACTTGTGGATGGTGGAGGGGCAGTCCTGCTCGGAAGCAGATGATGTGAAATGTTCCTTTCCAGTCTGGTTCACGATGTTTAACAGATTTGTCAGGTCACCACTGTGACCCCAAGCTTTGCTGGCAGATTGTTATATAGTATTTACTGAGAGCCCTGCTATCTGGTAAAGGCAGTTAAAAAGCCTGCAATCTCGACTCATTTCCAGCATGAACAGACTGGTCCTTGCTGCTTTACACAATAATCAAAGCTACCTTTTATGGCGTGCTCGCCACTCCCAAGCACTGGGCGAAGTGCTTTACCCGTCTTCCCCTCCGCGATGCCTCATGCCCACTTTAGCAGATAGTACTGTTAGCATTCCCATTTTACAGTGGAGGAAGCTGAGGCTCAGAGAGGTTAAGCAACTTGGCTGAAGGCCACACCACCAGCGAAGTGCCTGAGCCAAGATTTGGACTCGAGTCCATGGGACCCCCACGCTCGTGAGCTGACTGCTCTGCTCCACTGGGTCCCTTCATGAGGTCGTCCCACAGCACTGCTAGTTCCAGGGCGAGTGCCAGCACATGGCCCCACTGGGAGCCGGGGCCTGACTTAGGTCTACTGGAAAAAGTGTCACCTTTGGGGACACTCAAGGACAGGCTGGTTGGTTTCGTTGTGGATTTTATATACTCATGCCCTAACCCTGTGTTCCTGGTTTCTATAAGGCCCCGGGGAAGGTGCAAGGAATTTGCAAATAGGGCCTGTATGACTTATTTCCTAGGACACGGGAAGCTTTTCTTACCTCCTTTCTACCCTCTTCTCCAACCTGAACTCCCAAGTTTCTTCTCCTGAAGGTCTTTGCACTATAAGCGCCAAGGAGCCCGTGTGCGTGGCAGGGGCGGCTGGGAGGGTATCTGGAGAACCTTAGTGAGGCCTCTGGCCTAGCCAGAGAGGCAATAAGCTTGGGGACGTTCCGTTCTGGGTTCTGACGTTGTTGGTTCTGACGTCGTTGTGCTCTTTTGTAAGAGGAATTTCATACCTTGGAGACGCTTTGTACATATTTGTAATGACTTTATTAAAAAACTGATTGTGCACTTCT</dnaseq>| | sequence = <dnaseq>ATAGAGCCCAGTTCCTGTTTTTTTGTTCGTTTTTTTTTTTTTTTTTTTTTTAGCCGCCTTCATTTGGATACTGGGGACTTCTTTTCCACTTCTTCTTCTTCTTCTATTTTATTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGAGCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCACCACGCTCGGCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTTACCATGTTGGCCAGAGTGGTTTTGAACTCCTGGCCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGAGCTCAGCCTCCACTTCTTATTTTGATTCTTTTCTGTTTTGATGGTGAGAGGAAAGGGTGATTTACCCAATACTGTCACAGAAAAATGAAACTGTGACTGGTTTTCACAATGTATGTAGCTGATCTCATGTTCTCCTATTATTATGTTTCTGACAGTGATAAAATATCACTCTCCCTCCCTGGGGCATTAGAGGAGTCCTCACCCACCCACCTCCTACACAAGTATCTTTTAGGGACAGTGGCTCACCATTGTGGACTTTTTGAGTGTCCACCTGATATTACAAGTTGCATTGACCAGAACACAGATTTTGCTCTTCTGTGTCAATACCCATTTCTTTTCTGAAGGTCAGAAGTTGGTTAAGGGTTTGGGGGACCAGCTAGACACTCTTCTTAGTCCCATGGAGCTGACTGGAAGTTCCATGAGGGGAGGAAATTGATGTCAAAGTGTCATTTTAAAGCTTAAGCTGAAAGTTTATTTTTTAAATTCTCATTCATTCATTTAGCATATATTGATTGAGCATCTACAATGTGCCAGTTGTAGAATTCCATCTCAGAAGAGACTTGACTTGTGGATGGTGGAGGGGCAGTCCTGCTCGGAAGCAGATGATGTGAAATGTTCCTTTCCAGTCTGGTTCACGATGTTTAACAGATTTGTCAGGTCACCACTGTGACCCCAAGCTTTGCTGGCAGATTGTTATATAGTATTTACTGAGAGCCCTGCTATCTGGTAAAGGCAGTTAAAAAGCCTGCAATCTCGACTCATTTCCAGCATGAACAGACTGGTCCTTGCTGCTTTACACAATAATCAAAGCTACCTTTTATGGCGTGCTCGCCACTCCCAAGCACTGGGCGAAGTGCTTTACCCGTCTTCCCCTCCGCGATGCCTCATGCCCACTTTAGCAGATAGTACTGTTAGCATTCCCATTTTACAGTGGAGGAAGCTGAGGCTCAGAGAGGTTAAGCAACTTGGCTGAAGGCCACACCACCAGCGAAGTGCCTGAGCCAAGATTTGGACTCGAGTCCATGGGACCCCCACGCTCGTGAGCTGACTGCTCTGCTCCACTGGGTCCCTTCATGAGGTCGTCCCACAGCACTGCTAGTTCCAGGGCGAGTGCCAGCACATGGCCCCACTGGGAGCCGGGGCCTGACTTAGGTCTACTGGAAAAAGTGTCACCTTTGGGGACACTCAAGGACAGGCTGGTTGGTTTCGTTGTGGATTTTATATACTCATGCCCTAACCCTGTGTTCCTGGTTTCTATAAGGCCCCGGGGAAGGTGCAAGGAATTTGCAAATAGGGCCTGTATGACTTATTTCCTAGGACACGGGAAGCTTTTCTTACCTCCTTTCTACCCTCTTCTCCAACCTGAACTCCCAAGTTTCTTCTCCTGAAGGTCTTTGCACTATAAGCGCCAAGGAGCCCGTGTGCGTGGCAGGGGCGGCTGGGAGGGTATCTGGAGAACCTTAGTGAGGCCTCTGGCCTAGCCAGAGAGGCAATAAGCTTGGGGACGTTCCGTTCTGGGTTCTGACGTTGTTGGTTCTGACGTCGTTGTGCTCTTTTGTAAGAGGAATTTCATACCTTGGAGACGCTTTGTACATATTTGTAATGACTTTATTAAAAAACTGATTGTGCACTTCT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG012433]] | + | [[Category:Intergenic]][[Category:NONHSAG012433]][[Category:Transcripts]] |
Latest revision as of 21:12, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT030969 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2024 nt |
Genomic location |
chr12-:117293950..117295968 |
Exon number |
1 |
Exons |
117293950..117295968 |
Genome context |
|
Sequence |
000001 ATAGAGCCCA GTTCCTGTTT TTTTGTTCGT TTTTTTTTTT TTTTTTTTTT TAGCCGCCTT CATTTGGATA CTGGGGACTT 000080
000081 CTTTTCCACT TCTTCTTCTT CTTCTATTTT ATTTTGAGAC AGAGTCTCAC TCTGTCACCC AGGCTGGAGT GCAGTGGTGC 000160 000161 GAGCTCAGCT CACTGCAACC TCCACCTCCC AGGTTCAAGC GATTCTCCTG CCTCAGCCTC CTGAGTAGCT GGGATTACAG 000240 000241 GCACCCACCA CCACGCTCGG CTAATTTTTG TATTTTTAGT GGAGATGGGG TTTTACCATG TTGGCCAGAG TGGTTTTGAA 000320 000321 CTCCTGGCCT CAAGTGATCC ACCTGCCTTG GCCTCCCAAA GTGCTGGGAT TACAGGCATG AGCCACCGAG CTCAGCCTCC 000400 000401 ACTTCTTATT TTGATTCTTT TCTGTTTTGA TGGTGAGAGG AAAGGGTGAT TTACCCAATA CTGTCACAGA AAAATGAAAC 000480 000481 TGTGACTGGT TTTCACAATG TATGTAGCTG ATCTCATGTT CTCCTATTAT TATGTTTCTG ACAGTGATAA AATATCACTC 000560 000561 TCCCTCCCTG GGGCATTAGA GGAGTCCTCA CCCACCCACC TCCTACACAA GTATCTTTTA GGGACAGTGG CTCACCATTG 000640 000641 TGGACTTTTT GAGTGTCCAC CTGATATTAC AAGTTGCATT GACCAGAACA CAGATTTTGC TCTTCTGTGT CAATACCCAT 000720 000721 TTCTTTTCTG AAGGTCAGAA GTTGGTTAAG GGTTTGGGGG ACCAGCTAGA CACTCTTCTT AGTCCCATGG AGCTGACTGG 000800 000801 AAGTTCCATG AGGGGAGGAA ATTGATGTCA AAGTGTCATT TTAAAGCTTA AGCTGAAAGT TTATTTTTTA AATTCTCATT 000880 000881 CATTCATTTA GCATATATTG ATTGAGCATC TACAATGTGC CAGTTGTAGA ATTCCATCTC AGAAGAGACT TGACTTGTGG 000960 000961 ATGGTGGAGG GGCAGTCCTG CTCGGAAGCA GATGATGTGA AATGTTCCTT TCCAGTCTGG TTCACGATGT TTAACAGATT 001040 001041 TGTCAGGTCA CCACTGTGAC CCCAAGCTTT GCTGGCAGAT TGTTATATAG TATTTACTGA GAGCCCTGCT ATCTGGTAAA 001120 001121 GGCAGTTAAA AAGCCTGCAA TCTCGACTCA TTTCCAGCAT GAACAGACTG GTCCTTGCTG CTTTACACAA TAATCAAAGC 001200 001201 TACCTTTTAT GGCGTGCTCG CCACTCCCAA GCACTGGGCG AAGTGCTTTA CCCGTCTTCC CCTCCGCGAT GCCTCATGCC 001280 001281 CACTTTAGCA GATAGTACTG TTAGCATTCC CATTTTACAG TGGAGGAAGC TGAGGCTCAG AGAGGTTAAG CAACTTGGCT 001360 001361 GAAGGCCACA CCACCAGCGA AGTGCCTGAG CCAAGATTTG GACTCGAGTC CATGGGACCC CCACGCTCGT GAGCTGACTG 001440 001441 CTCTGCTCCA CTGGGTCCCT TCATGAGGTC GTCCCACAGC ACTGCTAGTT CCAGGGCGAG TGCCAGCACA TGGCCCCACT 001520 001521 GGGAGCCGGG GCCTGACTTA GGTCTACTGG AAAAAGTGTC ACCTTTGGGG ACACTCAAGG ACAGGCTGGT TGGTTTCGTT 001600 001601 GTGGATTTTA TATACTCATG CCCTAACCCT GTGTTCCTGG TTTCTATAAG GCCCCGGGGA AGGTGCAAGG AATTTGCAAA 001680 001681 TAGGGCCTGT ATGACTTATT TCCTAGGACA CGGGAAGCTT TTCTTACCTC CTTTCTACCC TCTTCTCCAA CCTGAACTCC 001760 001761 CAAGTTTCTT CTCCTGAAGG TCTTTGCACT ATAAGCGCCA AGGAGCCCGT GTGCGTGGCA GGGGCGGCTG GGAGGGTATC 001840 001841 TGGAGAACCT TAGTGAGGCC TCTGGCCTAG CCAGAGAGGC AATAAGCTTG GGGACGTTCC GTTCTGGGTT CTGACGTTGT 001920 001921 TGGTTCTGAC GTCGTTGTGC TCTTTTGTAA GAGGAATTTC ATACCTTGGA GACGCTTTGT ACATATTTGT AATGACTTTA 002000 002001 TTAAAAAACT GATTGTGCAC TTCT |
Predicted Small Protein
Name | NONHSAT030969_smProtein_497:730 |
Length | 78 |
Molecular weight | 8697.8488 |
Aromaticity | 0.142857142857 |
Instability index | 46.5831168831 |
Isoelectric point | 4.49066162109 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0418653948066 |
Amino acid sequence | MYVADLMFSYYYVSDSDKISLSLPGALEESSPTHLLHKYLLGTVAHHCGLFECPPDITSC IDQNTDFALLCQYPFLF |
Secondary structure | LEEHHHHEEEEEEELLLEEEELLLLLLLLLLLLHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLHHHHHHLLLLL |
PRMN | - |
PiMo | - |