Difference between revisions of "ENST00000420161.1"
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sequence = <dnaseq>CTGGCTGCCCCCTGGTGGCCGGAGGCCGTTACTGTCGCGGCTGAGGGGGCGTCCCGGTGTATCCGCAGCGCGCCCTGTCCCGCCATATACATTCCGTGCTTTTCAAACACCCGCCGTGGGCTAAGCATGGGACCCACGTGGGGCGGGGACACACGGCGATAAAGAGCCAGGCCCTCGCTGCCAAGGAGCTTTCCCGTAACACCGATGCATCAAACAAAAGATATTAAAGACATTGGCGGTAACACTGGAATGGATGTGAAGATGGGAGAGGTCTACCCATAGCCCATTCTACAGAGCAGAACTGAGGCTCAGATATTGAGGTAGATTAAAGATGGCTGCCAGTTCAGTGCCACTTGTCCCGTTGAACTGTGAAGTCTTATCCCCCTCCTTGGGTCTGCACCAGCCTTGATGACTTGCTCACTACAATGTGGTAGAAGTGATGGTGCATGACTTCCAAGGTTAGATCAGAAGAAGCCTTGAAGTTCCTGCCTTGGTCTCTTGAAACAACTTACCGTGTAAGAAGTCTGACACCCTGAGACCGCCATGTTGGCACAGTTATGGGTGGATGCTCCAGTAGATGGATCCAGCTGAGCCCAGCCCTCCAGCCATTCCCACCCCCAAACCATGGGTGAAACTGTCTTGGACCCTCCAGTCCAGCCCACTCAACATCTAAATACCACAGACTGACCTCAGCTGATACCATCACCCAGTTAAAATGTGCCTGAAACTGACCCACAAAATCATGAGATAAACTAAAATGGTTGTTGTCCTAAGCCACTAAGATAATAGAGCAGATATATATGCACTTAACACTC</dnaseq>| | sequence = <dnaseq>CTGGCTGCCCCCTGGTGGCCGGAGGCCGTTACTGTCGCGGCTGAGGGGGCGTCCCGGTGTATCCGCAGCGCGCCCTGTCCCGCCATATACATTCCGTGCTTTTCAAACACCCGCCGTGGGCTAAGCATGGGACCCACGTGGGGCGGGGACACACGGCGATAAAGAGCCAGGCCCTCGCTGCCAAGGAGCTTTCCCGTAACACCGATGCATCAAACAAAAGATATTAAAGACATTGGCGGTAACACTGGAATGGATGTGAAGATGGGAGAGGTCTACCCATAGCCCATTCTACAGAGCAGAACTGAGGCTCAGATATTGAGGTAGATTAAAGATGGCTGCCAGTTCAGTGCCACTTGTCCCGTTGAACTGTGAAGTCTTATCCCCCTCCTTGGGTCTGCACCAGCCTTGATGACTTGCTCACTACAATGTGGTAGAAGTGATGGTGCATGACTTCCAAGGTTAGATCAGAAGAAGCCTTGAAGTTCCTGCCTTGGTCTCTTGAAACAACTTACCGTGTAAGAAGTCTGACACCCTGAGACCGCCATGTTGGCACAGTTATGGGTGGATGCTCCAGTAGATGGATCCAGCTGAGCCCAGCCCTCCAGCCATTCCCACCCCCAAACCATGGGTGAAACTGTCTTGGACCCTCCAGTCCAGCCCACTCAACATCTAAATACCACAGACTGACCTCAGCTGATACCATCACCCAGTTAAAATGTGCCTGAAACTGACCCACAAAATCATGAGATAAACTAAAATGGTTGTTGTCCTAAGCCACTAAGATAATAGAGCAGATATATATGCACTTAACACTC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:ENSG00000243179.1]] | + | [[Category:Intergenic]][[Category:ENSG00000243179.1]][[Category:lnc-ACTR3-1]] |
Revision as of 09:18, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000420161.1 |
Source |
Gencode19 |
Same with |
lnc-ACTR3-1:3 |
Classification |
intergenic |
Length |
815 nt |
Genomic location |
chr2+:114737486..114740835 |
Exon number |
2 |
Exons |
114737486..114737705,114740241..114740835 |
Genome context |
|
Sequence |
000001 CTGGCTGCCC CCTGGTGGCC GGAGGCCGTT ACTGTCGCGG CTGAGGGGGC GTCCCGGTGT ATCCGCAGCG CGCCCTGTCC 000080
000081 CGCCATATAC ATTCCGTGCT TTTCAAACAC CCGCCGTGGG CTAAGCATGG GACCCACGTG GGGCGGGGAC ACACGGCGAT 000160 000161 AAAGAGCCAG GCCCTCGCTG CCAAGGAGCT TTCCCGTAAC ACCGATGCAT CAAACAAAAG ATATTAAAGA CATTGGCGGT 000240 000241 AACACTGGAA TGGATGTGAA GATGGGAGAG GTCTACCCAT AGCCCATTCT ACAGAGCAGA ACTGAGGCTC AGATATTGAG 000320 000321 GTAGATTAAA GATGGCTGCC AGTTCAGTGC CACTTGTCCC GTTGAACTGT GAAGTCTTAT CCCCCTCCTT GGGTCTGCAC 000400 000401 CAGCCTTGAT GACTTGCTCA CTACAATGTG GTAGAAGTGA TGGTGCATGA CTTCCAAGGT TAGATCAGAA GAAGCCTTGA 000480 000481 AGTTCCTGCC TTGGTCTCTT GAAACAACTT ACCGTGTAAG AAGTCTGACA CCCTGAGACC GCCATGTTGG CACAGTTATG 000560 000561 GGTGGATGCT CCAGTAGATG GATCCAGCTG AGCCCAGCCC TCCAGCCATT CCCACCCCCA AACCATGGGT GAAACTGTCT 000640 000641 TGGACCCTCC AGTCCAGCCC ACTCAACATC TAAATACCAC AGACTGACCT CAGCTGATAC CATCACCCAG TTAAAATGTG 000720 000721 CCTGAAACTG ACCCACAAAA TCATGAGATA AACTAAAATG GTTGTTGTCC TAAGCCACTA AGATAATAGA GCAGATATAT 000800 000801 ATGCACTTAA CACTC |
Predicted Small Protein
Name | ENST00000420161.1_smProtein_446:535 |
Length | 30 |
Molecular weight | 3426.9374 |
Aromaticity | 0.103448275862 |
Instability index | 50.8103448276 |
Isoelectric point | 9.69073486328 |
Runs | 7 |
Runs residual | 0.0418103448276 |
Runs probability | 0.0376258611552 |
Amino acid sequence | MTSKVRSEEALKFLPWSLETTYRVRSLTP |
Secondary structure | LLLLLLLHHHHHHLLLLHHHLLEEELLLL |
PRMN | - |
PiMo | - |