Difference between revisions of "NONHSAT083123"
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sequence = <dnaseq>CAGGAGTTACACTGTTTGTGATATGGTGTATGACCTGGTCAATCTTAGGCTCTGAAGCTCTCCCTGGTGGAAATTTATTTGGATTGTTAATTATTTTTTATAGTGCCATTAGTGGGGGAAAAATTTTACAACTCATTAGAATACCTTTAGTGCCTCCACTTCCACCTCTTCTAGGGATGTTACTGGCTGGTTTTACAATTAGGAATGTTCCATTCATCAATGAACATGTCCATGTTCCTAACGCATGGTCTTCAATTTTAAGAAGCATTGCCCTTAACATTATTCTAATACGAGTTGGGCTTGGACTCGATCCATTCAGGCTTTGAGGCATTTGAAGGTGGTTTGTTTCAGATTGGCTGTAGGTCCACGCCTTATGGAGGCAAGTGCAGCTGCTGTTTTTTCCCACTTCATTATGAAATTTCCCTGTCAATTGGCAATTCTTTTGTTCTAGGTGCTGTCTCTCCTGCTGTTGTTGTCCTTTACACAATGGTGTCGCAAGAAAATGGATATGGTGTTGAGGAAGACATTCCAACCTTACTAATGGCTGCTAGCAGTATGGATGACATTCTGGCTATCACTGGATTCAATACATGCTTGAGCATAGTCTTCTCCTCGGCAGGTGGTATGCTTAATAACGCCATAGCCTCTATAAGGAACGTATGTATTAGTCTGCTGGCAGGAATTGTTTTGGGATTCTTACATTGAAGAGAGGATTCCTTGTTTTGACTACGTGTGTTTCTGCTGTCTTAGGCAGCCAACGTATTGGTTTACATGGATCTGGAGGATTATGCACACTAGTGTTGAGTTTCATTGCAGGGACAAAATGGTCCCAAGAAAAGGTGAATACCAAAAGATTATTACAAATGTATGGGATATTTTTCAACCACTTCTTTTTGGTTTAGTTGGAGCAGAAGTATCTGTTTCATCACTTGAATCAGGCATATCTGTTGCTACTCTGAGTTTGGCATTATGTGTTCGAATTTTAACCACATATCTATTGATGTGCTTTGCTGGTTTTAGTTTTAAGGAGAAAATATTTATTGCTTTAGCATGGATGCCCAAAGCTACAGTACAGGCTGTGTTAGGTCCTCTGGCTCTAGAAACAGCAAGAGTCTCCGCACCCCACTTGGAACCATATGTGAAGGATGTGATGACAGTAGCATTTTTAGCCATCTTGATCACAGCTCCAAATGGAGCTCTACTTATGGGCATTCTGGGGCCTAAACTGCTTACACGCCATTATGATCCAAGCAAAATAAAACTGCAATTGTCAACATTAGAACATCAT</dnaseq>| | sequence = <dnaseq>CAGGAGTTACACTGTTTGTGATATGGTGTATGACCTGGTCAATCTTAGGCTCTGAAGCTCTCCCTGGTGGAAATTTATTTGGATTGTTAATTATTTTTTATAGTGCCATTAGTGGGGGAAAAATTTTACAACTCATTAGAATACCTTTAGTGCCTCCACTTCCACCTCTTCTAGGGATGTTACTGGCTGGTTTTACAATTAGGAATGTTCCATTCATCAATGAACATGTCCATGTTCCTAACGCATGGTCTTCAATTTTAAGAAGCATTGCCCTTAACATTATTCTAATACGAGTTGGGCTTGGACTCGATCCATTCAGGCTTTGAGGCATTTGAAGGTGGTTTGTTTCAGATTGGCTGTAGGTCCACGCCTTATGGAGGCAAGTGCAGCTGCTGTTTTTTCCCACTTCATTATGAAATTTCCCTGTCAATTGGCAATTCTTTTGTTCTAGGTGCTGTCTCTCCTGCTGTTGTTGTCCTTTACACAATGGTGTCGCAAGAAAATGGATATGGTGTTGAGGAAGACATTCCAACCTTACTAATGGCTGCTAGCAGTATGGATGACATTCTGGCTATCACTGGATTCAATACATGCTTGAGCATAGTCTTCTCCTCGGCAGGTGGTATGCTTAATAACGCCATAGCCTCTATAAGGAACGTATGTATTAGTCTGCTGGCAGGAATTGTTTTGGGATTCTTACATTGAAGAGAGGATTCCTTGTTTTGACTACGTGTGTTTCTGCTGTCTTAGGCAGCCAACGTATTGGTTTACATGGATCTGGAGGATTATGCACACTAGTGTTGAGTTTCATTGCAGGGACAAAATGGTCCCAAGAAAAGGTGAATACCAAAAGATTATTACAAATGTATGGGATATTTTTCAACCACTTCTTTTTGGTTTAGTTGGAGCAGAAGTATCTGTTTCATCACTTGAATCAGGCATATCTGTTGCTACTCTGAGTTTGGCATTATGTGTTCGAATTTTAACCACATATCTATTGATGTGCTTTGCTGGTTTTAGTTTTAAGGAGAAAATATTTATTGCTTTAGCATGGATGCCCAAAGCTACAGTACAGGCTGTGTTAGGTCCTCTGGCTCTAGAAACAGCAAGAGTCTCCGCACCCCACTTGGAACCATATGTGAAGGATGTGATGACAGTAGCATTTTTAGCCATCTTGATCACAGCTCCAAATGGAGCTCTACTTATGGGCATTCTGGGGCCTAAACTGCTTACACGCCATTATGATCCAAGCAAAATAAAACTGCAATTGTCAACATTAGAACATCAT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG033161]] | + | [[Category:Intergenic]][[Category:NONHSAG033161]][[Category:Transcripts]] |
Latest revision as of 00:12, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT083123 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1288 nt |
Genomic location |
chr22-:16909690..16957613 |
Exon number |
9 |
Exons |
16909690..16909904,16914068..16914203,16915106..16915196,16919027..16919177,16920053..16920131,16940672..16940846,16953593..16953719,16954829..16954970,16957442..16957613 |
Genome context |
|
Sequence |
000001 CAGGAGTTAC ACTGTTTGTG ATATGGTGTA TGACCTGGTC AATCTTAGGC TCTGAAGCTC TCCCTGGTGG AAATTTATTT 000080
000081 GGATTGTTAA TTATTTTTTA TAGTGCCATT AGTGGGGGAA AAATTTTACA ACTCATTAGA ATACCTTTAG TGCCTCCACT 000160 000161 TCCACCTCTT CTAGGGATGT TACTGGCTGG TTTTACAATT AGGAATGTTC CATTCATCAA TGAACATGTC CATGTTCCTA 000240 000241 ACGCATGGTC TTCAATTTTA AGAAGCATTG CCCTTAACAT TATTCTAATA CGAGTTGGGC TTGGACTCGA TCCATTCAGG 000320 000321 CTTTGAGGCA TTTGAAGGTG GTTTGTTTCA GATTGGCTGT AGGTCCACGC CTTATGGAGG CAAGTGCAGC TGCTGTTTTT 000400 000401 TCCCACTTCA TTATGAAATT TCCCTGTCAA TTGGCAATTC TTTTGTTCTA GGTGCTGTCT CTCCTGCTGT TGTTGTCCTT 000480 000481 TACACAATGG TGTCGCAAGA AAATGGATAT GGTGTTGAGG AAGACATTCC AACCTTACTA ATGGCTGCTA GCAGTATGGA 000560 000561 TGACATTCTG GCTATCACTG GATTCAATAC ATGCTTGAGC ATAGTCTTCT CCTCGGCAGG TGGTATGCTT AATAACGCCA 000640 000641 TAGCCTCTAT AAGGAACGTA TGTATTAGTC TGCTGGCAGG AATTGTTTTG GGATTCTTAC ATTGAAGAGA GGATTCCTTG 000720 000721 TTTTGACTAC GTGTGTTTCT GCTGTCTTAG GCAGCCAACG TATTGGTTTA CATGGATCTG GAGGATTATG CACACTAGTG 000800 000801 TTGAGTTTCA TTGCAGGGAC AAAATGGTCC CAAGAAAAGG TGAATACCAA AAGATTATTA CAAATGTATG GGATATTTTT 000880 000881 CAACCACTTC TTTTTGGTTT AGTTGGAGCA GAAGTATCTG TTTCATCACT TGAATCAGGC ATATCTGTTG CTACTCTGAG 000960 000961 TTTGGCATTA TGTGTTCGAA TTTTAACCAC ATATCTATTG ATGTGCTTTG CTGGTTTTAG TTTTAAGGAG AAAATATTTA 001040 001041 TTGCTTTAGC ATGGATGCCC AAAGCTACAG TACAGGCTGT GTTAGGTCCT CTGGCTCTAG AAACAGCAAG AGTCTCCGCA 001120 001121 CCCCACTTGG AACCATATGT GAAGGATGTG ATGACAGTAG CATTTTTAGC CATCTTGATC ACAGCTCCAA ATGGAGCTCT 001200 001201 ACTTATGGGC ATTCTGGGGC CTAAACTGCT TACACGCCAT TATGATCCAA GCAAAATAAA ACTGCAATTG TCAACATTAG 001280 001281 AACATCAT |
Predicted Small Protein
Name | NONHSAT083123_smProtein_29:325 |
Length | 99 |
Molecular weight | 10648.7503 |
Aromaticity | 0.0816326530612 |
Instability index | 54.3847959184 |
Isoelectric point | 10.7805786133 |
Runs | 14 |
Runs residual | 0.00381460995613 |
Runs probability | 0.0731193378252 |
Amino acid sequence | MTWSILGSEALPGGNLFGLLIIFYSAISGGKILQLIRIPLVPPLPPLLGMLLAGFTIRNV PFINEHVHVPNAWSSILRSIALNIILIRVGLGLDPFRL |
Secondary structure | LEEEEELLLLLLLLLHHHHEEEEEEELLLLLEEEEEELLLLLLLLHHHHHHHHLLEEELL LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiTTTTTTTTTTTTTTTTTTooo oooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiii |