Difference between revisions of "NONHSAT059809"
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sequence = <dnaseq>AGTCATAAGCATAAATGTTCTAAGAGTGTACAACAGGACTTTGCGTCCGTCAGTGAGGATAACAAGTCTGTCATTGGATAGATCCTAAGTGAAATTAGATATAAAAGAGAAATGAATTGAATTTACTGGACAACATTCTTCAGATCTGCTGGGACATATTTTCATTTTCTGTGAGTACTGGAATGGATTGGGACAAGcccactctgcccctcatcctgtgcctatgaagaccccagactcagtcagagagaaagggagaagcagctggacttctgaaagaagaaacttgacttcagagggaagacttgatggcttgatttcaaagaagagtcctgccagagatggccagacttgaggggaagattacctgcccatcccatttcctttccagctccccttcctgctgagagccactttttcatcgttcaatgaaattgtctacattcaccatccttcaatttgttcctgctacctcatttttcctggatgacagacaagagctcgggagccacaagtgcagatactcaaaaaaaaaggctgtcacactggccctttgccctcagtagtggaaggcag</dnaseq>| | sequence = <dnaseq>AGTCATAAGCATAAATGTTCTAAGAGTGTACAACAGGACTTTGCGTCCGTCAGTGAGGATAACAAGTCTGTCATTGGATAGATCCTAAGTGAAATTAGATATAAAAGAGAAATGAATTGAATTTACTGGACAACATTCTTCAGATCTGCTGGGACATATTTTCATTTTCTGTGAGTACTGGAATGGATTGGGACAAGcccactctgcccctcatcctgtgcctatgaagaccccagactcagtcagagagaaagggagaagcagctggacttctgaaagaagaaacttgacttcagagggaagacttgatggcttgatttcaaagaagagtcctgccagagatggccagacttgaggggaagattacctgcccatcccatttcctttccagctccccttcctgctgagagccactttttcatcgttcaatgaaattgtctacattcaccatccttcaatttgttcctgctacctcatttttcctggatgacagacaagagctcgggagccacaagtgcagatactcaaaaaaaaaggctgtcacactggccctttgccctcagtagtggaaggcag</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG024138]] | + | [[Category:Intergenic]][[Category:NONHSAG024138]][[Category:Transcripts]] |
Latest revision as of 22:40, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059809 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
576 nt |
Genomic location |
chr18-:70287447..70305756 |
Exon number |
2 |
Exons |
70287447..70287825,70305560..70305756 |
Genome context |
|
Sequence |
000001 AGTCATAAGC ATAAATGTTC TAAGAGTGTA CAACAGGACT TTGCGTCCGT CAGTGAGGAT AACAAGTCTG TCATTGGATA 000080
000081 GATCCTAAGT GAAATTAGAT ATAAAAGAGA AATGAATTGA ATTTACTGGA CAACATTCTT CAGATCTGCT GGGACATATT 000160 000161 TTCATTTTCT GTGAGTACTG GAATGGATTG GGACAAGccc actctgcccc tcatcctgtg cctatgaaga ccccagactc 000240 000241 agtcagagag aaagggagaa gcagctggac ttctgaaaga agaaacttga cttcagaggg aagacttgat ggcttgattt 000320 000321 caaagaagag tcctgccaga gatggccaga cttgagggga agattacctg cccatcccat ttcctttcca gctccccttc 000400 000401 ctgctgagag ccactttttc atcgttcaat gaaattgtct acattcacca tccttcaatt tgttcctgct acctcatttt 000480 000481 tcctggatga cagacaagag ctcgggagcc acaagtgcag atactcaaaa aaaaaggctg tcacactggc cctttgccct 000560 000561 cagtagtgga aggcag |
Predicted Small Protein
Name | NONHSAT059809_smProtein_428:565 |
Length | 46 |
Molecular weight | 5149.0195 |
Aromaticity | 0.111111111111 |
Instability index | 46.1866666667 |
Isoelectric point | 9.51068115234 |
Runs | 9 |
Runs residual | 0.0377525252525 |
Runs probability | 0.03228718915 |
Amino acid sequence | MKLSTFTILQFVPATSFFLDDRQELGSHKCRYSKKKAVTLALCPQ |
Secondary structure | LLLLEEEEELLLLLLLLLLLLHHHHLLLEEEELLLLEEEEEELLL |
PRMN | - |
PiMo | - |