Difference between revisions of "NONHSAT007611"

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sequence = <dnaseq>AGATCAACCTGGATGCCTTCCTTCACAATAATCTCATGGAGGTAATTTAAAGAATCCCTTTTTTGGAGAGTCAGAGAGAAAAGCAAAAAAAAAGAGCATGAGGAATTTGAAGACTGAGAGATGAGTTGTGTAGCACCAACATTTTCTTTCTGCCTGACCTTCATACCTGATGAATTAAAAGTACTGGTGACAGTAACAGTTTCCCTCTGTCTTTTGGCTGTCCACACTGAAGGATGATAGAGATGAGTAGAAGAAGGCCAAACCCAGCCATCACCAGAACAGGGCCTGCTGGCTTTGTGAGCATTTCACAATATTGTCTGGAGCTGTTTGGCTTATAGAAGAGGGAAGGTACTATGAGCTAATTTGTGTCAAGCTACTCCTCACAGCTATAGGCAGGAAGTGCTATTTCCT</dnaseq>|
 
sequence = <dnaseq>AGATCAACCTGGATGCCTTCCTTCACAATAATCTCATGGAGGTAATTTAAAGAATCCCTTTTTTGGAGAGTCAGAGAGAAAAGCAAAAAAAAAGAGCATGAGGAATTTGAAGACTGAGAGATGAGTTGTGTAGCACCAACATTTTCTTTCTGCCTGACCTTCATACCTGATGAATTAAAAGTACTGGTGACAGTAACAGTTTCCCTCTGTCTTTTGGCTGTCCACACTGAAGGATGATAGAGATGAGTAGAAGAAGGCCAAACCCAGCCATCACCAGAACAGGGCCTGCTGGCTTTGTGAGCATTTCACAATATTGTCTGGAGCTGTTTGGCTTATAGAAGAGGGAAGGTACTATGAGCTAATTTGTGTCAAGCTACTCCTCACAGCTATAGGCAGGAAGTGCTATTTCCT</dnaseq>|
 
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[[Category:Antisense]][[Category:NONHSAG003471]]
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[[Category:Antisense]][[Category:NONHSAG003471]][[Category:Transcripts]]

Revision as of 11:21, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT007611

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

411 nt

Genomic location

chr1-:172350061..172384516

Exon number

4

Exons

172350061..172350113,172355921..172356097,172368959..172369056,172384434..172384516

Genome context

Sequence
000001 AGATCAACCT GGATGCCTTC CTTCACAATA ATCTCATGGA GGTAATTTAA AGAATCCCTT TTTTGGAGAG TCAGAGAGAA 000080
000081 AAGCAAAAAA AAAGAGCATG AGGAATTTGA AGACTGAGAG ATGAGTTGTG TAGCACCAAC ATTTTCTTTC TGCCTGACCT 000160
000161 TCATACCTGA TGAATTAAAA GTACTGGTGA CAGTAACAGT TTCCCTCTGT CTTTTGGCTG TCCACACTGA AGGATGATAG 000240
000241 AGATGAGTAG AAGAAGGCCA AACCCAGCCA TCACCAGAAC AGGGCCTGCT GGCTTTGTGA GCATTTCACA ATATTGTCTG 000320
000321 GAGCTGTTTG GCTTATAGAA GAGGGAAGGT ACTATGAGCT AATTTGTGTC AAGCTACTCC TCACAGCTAT AGGCAGGAAG 000400
000401 TGCTATTTCC T
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Predicted Small Protein

Name NONHSAT007611_smProtein_233:337
Length 35
Molecular weight 3812.4452
Aromaticity 0.0882352941176
Instability index 97.6735294118
Isoelectric point 9.48919677734
Runs 6
Runs residual 0.00967982129561
Runs probability 0.0127627627628
Amino acid sequence MIEMSRRRPNPAITRTGPAGFVSISQYCLELFGL
Secondary structure LEEELLLLLLLLLLLLLLLLLEEHHHHHHHHLLL
PRMN -
PiMo -