Difference between revisions of "NONHSAT104506"
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sequence = <dnaseq>GCCAAGGGCTGGAACTTTATTATTGTCACAGAGCACAGGAGAGACCGCTTGGGTCTCAATGAAGGTTTGCTTTTCCTCTTCTCCAGGGGAAGCTACTGCAAGAAGGCCCACCAGCCAGGCTAGGTCAAATGGGGTTGGGGCCACAACATGATAGTTAAACCCATAAACACAGACTTGATTCGATCCCAGCTTCACGACTTCTTAGCTGTGTGACCTTAGGTAAGTCTGTTAACCTCTCTCAGCCTTGGCTTTGTGGAGTGGAGTGAAGAGCAGGGCCTGCTTCACTGGGGTGTTATCAGGATGGAGGGGGACAAGGCCTATGAAAGTGTTTAGCACAGCGCCTGGCAGATCGTGACCAGTCACGGAGTGGAAGCTATCATGATCAAATCTGATTTCTCCACGGTCAGGCCAGCCCTGTCACTACGGATGAGGAAGAGGGGGTCTCATTTCATAAATGCCTTCAATGCGGCCTGTGAGAAAGACAGCTTGGGACACCTGTGTGAGCTTCCAACGTCTTGTAGCAAGGTTAGCAATCACCATGTGTAGGGGAAGAGCCATAGTGTTCCTAGGGTGGGTAGAGATGCCACAAGAGGGCGTTCTGAGTTTTCATCTTCTCTACCTTGAAAAATTTTCCATTTGTTCTCTGGCTGCATTCCAAATCGAACGAAGACTTAAGGTTTTTAGTTTACCTAACTGATTGAATACACTTTTAAAATGAATTCATGTGTGTTTACTAGTTTATCAGTCATGTGGATGCAATACCGCAGCCCCTGTCGCAAGGCGCGTTGGGAAGTGGGTTGAGGGTGTGGTGGAGACAAGAAACGCATGCCTGATGGTGTCCTGGTTCAACCGCTGCTCAGCCGGGTGGCCTTGGACAAATTTCCCAAGAGTACGGCAGTGCTGAAGTTCCCACATCCAGCCTCACAGGGATGTTATGAAATAGACACGATGGAAAGAAAAGCAACGCAAAGGTTTGGAACATGGTTCATAAGCCCTCTTACCTCCAGGGACAGCCTTCTTCTTGAACCCTCATCCTGTGAGCCAGCCGAGGCCCCATTGGGGGGCAACTGTGGGGTGGGAAGGAGGCAAATCCAGCTGTGTCCTTTTCTTGTCAAGAACAGCTTAATTTAGAAGGAGGACATTTAGTGAGTACAATTAACAGGTTTTTAATATATTCACAAAGTTGTGCAAACAATGGCACAATATATTTTAGGTTATTTCACCATCCAAAAAAGAAGCTCCTTATCCTTAGACAACCCCTAGTCCTGGGCAGACCAGTTTCTATCTCTATAGATCTGTCTATATATTTTCTGGATATTTCAATACATGGAATTATTTAATATGTTGACCTACCTTTTGATGCCATGCCCCACCTTTATGCTTGGCGCATTCCAGCCTAACAGCATCATTCATGGTACTTAACATTTTATATCATCGAGCAATCAATTGTCTCCAACCTATCTTTCTTCTGCCACTCCTCCTCTCTTCCCAGCCATCTTCCCATAATGATTTTTCAAGATGCAAATATGCTCATATCTTACTCAAGTTTAATATCCCAAAAGGGCTCCCCATTGCCCTCAGGCTGAATTCTGAAGCCCTTCCCAAAGCCTGCGAGGGTCTGCCGCATCTAGCCCCAGTGACCTCTTCCTCTTGGGCTACAGCTCATAGATGTCCTTCCATTCTCCTAGGGAGCCCTGTGCCCACCCACTTCGGGCTCCCAGGGACTGTGCTGCTCCCCGTCACTCTCCCTGCCCATCTCTTCCTCCTGTGCTAGGTCTCTAATCAAGTGGCCACTCTGGGAAACCCTCCTTGACTTTTTTTTTTTTTTGAGACAGTTACTGTATTTATGGTTACCTTTATTTCCTAATTAGGCACAGTGTTAGAGTTTGCTATTTACAGTAGCTATTTCTATGTGTAATAAAAAGGACTCATCCTACATTTAAAAATATTATAATCATTTGCAGACATGGAAGAAATAAAATAGGGGGCATCTGAATGACTGAGTTTGGAAAACAGAGTCCGATACCATTTAATCATCAGAATGGCTGGTGCTGCTGGCAAGGGAATGTTATTGCTCCTACATGGAGGACCAGGAAGGGGATTGTTCCAGGGTCACAGGGCCTGAGCTTGGACCAGAGGAGTTGAAGACCATTTCCACCAAGGCCATTTCCATTCCAAGATGTAGGCTAAGATTATTGCAGCAAAGATAGCATCTCCCCTAGGTTTAGAAACGAGAACTAGATGGGAGGTAGTCCCATGCTTCTGAAGGAGAAACTGATGCAGGGAGAAGGGCTGAGGCACA</dnaseq>| | sequence = <dnaseq>GCCAAGGGCTGGAACTTTATTATTGTCACAGAGCACAGGAGAGACCGCTTGGGTCTCAATGAAGGTTTGCTTTTCCTCTTCTCCAGGGGAAGCTACTGCAAGAAGGCCCACCAGCCAGGCTAGGTCAAATGGGGTTGGGGCCACAACATGATAGTTAAACCCATAAACACAGACTTGATTCGATCCCAGCTTCACGACTTCTTAGCTGTGTGACCTTAGGTAAGTCTGTTAACCTCTCTCAGCCTTGGCTTTGTGGAGTGGAGTGAAGAGCAGGGCCTGCTTCACTGGGGTGTTATCAGGATGGAGGGGGACAAGGCCTATGAAAGTGTTTAGCACAGCGCCTGGCAGATCGTGACCAGTCACGGAGTGGAAGCTATCATGATCAAATCTGATTTCTCCACGGTCAGGCCAGCCCTGTCACTACGGATGAGGAAGAGGGGGTCTCATTTCATAAATGCCTTCAATGCGGCCTGTGAGAAAGACAGCTTGGGACACCTGTGTGAGCTTCCAACGTCTTGTAGCAAGGTTAGCAATCACCATGTGTAGGGGAAGAGCCATAGTGTTCCTAGGGTGGGTAGAGATGCCACAAGAGGGCGTTCTGAGTTTTCATCTTCTCTACCTTGAAAAATTTTCCATTTGTTCTCTGGCTGCATTCCAAATCGAACGAAGACTTAAGGTTTTTAGTTTACCTAACTGATTGAATACACTTTTAAAATGAATTCATGTGTGTTTACTAGTTTATCAGTCATGTGGATGCAATACCGCAGCCCCTGTCGCAAGGCGCGTTGGGAAGTGGGTTGAGGGTGTGGTGGAGACAAGAAACGCATGCCTGATGGTGTCCTGGTTCAACCGCTGCTCAGCCGGGTGGCCTTGGACAAATTTCCCAAGAGTACGGCAGTGCTGAAGTTCCCACATCCAGCCTCACAGGGATGTTATGAAATAGACACGATGGAAAGAAAAGCAACGCAAAGGTTTGGAACATGGTTCATAAGCCCTCTTACCTCCAGGGACAGCCTTCTTCTTGAACCCTCATCCTGTGAGCCAGCCGAGGCCCCATTGGGGGGCAACTGTGGGGTGGGAAGGAGGCAAATCCAGCTGTGTCCTTTTCTTGTCAAGAACAGCTTAATTTAGAAGGAGGACATTTAGTGAGTACAATTAACAGGTTTTTAATATATTCACAAAGTTGTGCAAACAATGGCACAATATATTTTAGGTTATTTCACCATCCAAAAAAGAAGCTCCTTATCCTTAGACAACCCCTAGTCCTGGGCAGACCAGTTTCTATCTCTATAGATCTGTCTATATATTTTCTGGATATTTCAATACATGGAATTATTTAATATGTTGACCTACCTTTTGATGCCATGCCCCACCTTTATGCTTGGCGCATTCCAGCCTAACAGCATCATTCATGGTACTTAACATTTTATATCATCGAGCAATCAATTGTCTCCAACCTATCTTTCTTCTGCCACTCCTCCTCTCTTCCCAGCCATCTTCCCATAATGATTTTTCAAGATGCAAATATGCTCATATCTTACTCAAGTTTAATATCCCAAAAGGGCTCCCCATTGCCCTCAGGCTGAATTCTGAAGCCCTTCCCAAAGCCTGCGAGGGTCTGCCGCATCTAGCCCCAGTGACCTCTTCCTCTTGGGCTACAGCTCATAGATGTCCTTCCATTCTCCTAGGGAGCCCTGTGCCCACCCACTTCGGGCTCCCAGGGACTGTGCTGCTCCCCGTCACTCTCCCTGCCCATCTCTTCCTCCTGTGCTAGGTCTCTAATCAAGTGGCCACTCTGGGAAACCCTCCTTGACTTTTTTTTTTTTTTGAGACAGTTACTGTATTTATGGTTACCTTTATTTCCTAATTAGGCACAGTGTTAGAGTTTGCTATTTACAGTAGCTATTTCTATGTGTAATAAAAAGGACTCATCCTACATTTAAAAATATTATAATCATTTGCAGACATGGAAGAAATAAAATAGGGGGCATCTGAATGACTGAGTTTGGAAAACAGAGTCCGATACCATTTAATCATCAGAATGGCTGGTGCTGCTGGCAAGGGAATGTTATTGCTCCTACATGGAGGACCAGGAAGGGGATTGTTCCAGGGTCACAGGGCCTGAGCTTGGACCAGAGGAGTTGAAGACCATTTCCACCAAGGCCATTTCCATTCCAAGATGTAGGCTAAGATTATTGCAGCAAAGATAGCATCTCCCCTAGGTTTAGAAACGAGAACTAGATGGGAGGTAGTCCCATGCTTCTGAAGGAGAAACTGATGCAGGGAGAAGGGCTGAGGCACA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG041904]] | + | [[Category:Intergenic]][[Category:NONHSAG041904]][[Category:Transcripts]] |
Revision as of 10:25, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104506 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2302 nt |
Genomic location |
chr5-:148804756..148812399 |
Exon number |
4 |
Exons |
148804756..148805222,148807548..148808282,148810298..148810891,148811894..148812399 |
Genome context |
|
Sequence |
000001 GCCAAGGGCT GGAACTTTAT TATTGTCACA GAGCACAGGA GAGACCGCTT GGGTCTCAAT GAAGGTTTGC TTTTCCTCTT 000080
000081 CTCCAGGGGA AGCTACTGCA AGAAGGCCCA CCAGCCAGGC TAGGTCAAAT GGGGTTGGGG CCACAACATG ATAGTTAAAC 000160 000161 CCATAAACAC AGACTTGATT CGATCCCAGC TTCACGACTT CTTAGCTGTG TGACCTTAGG TAAGTCTGTT AACCTCTCTC 000240 000241 AGCCTTGGCT TTGTGGAGTG GAGTGAAGAG CAGGGCCTGC TTCACTGGGG TGTTATCAGG ATGGAGGGGG ACAAGGCCTA 000320 000321 TGAAAGTGTT TAGCACAGCG CCTGGCAGAT CGTGACCAGT CACGGAGTGG AAGCTATCAT GATCAAATCT GATTTCTCCA 000400 000401 CGGTCAGGCC AGCCCTGTCA CTACGGATGA GGAAGAGGGG GTCTCATTTC ATAAATGCCT TCAATGCGGC CTGTGAGAAA 000480 000481 GACAGCTTGG GACACCTGTG TGAGCTTCCA ACGTCTTGTA GCAAGGTTAG CAATCACCAT GTGTAGGGGA AGAGCCATAG 000560 000561 TGTTCCTAGG GTGGGTAGAG ATGCCACAAG AGGGCGTTCT GAGTTTTCAT CTTCTCTACC TTGAAAAATT TTCCATTTGT 000640 000641 TCTCTGGCTG CATTCCAAAT CGAACGAAGA CTTAAGGTTT TTAGTTTACC TAACTGATTG AATACACTTT TAAAATGAAT 000720 000721 TCATGTGTGT TTACTAGTTT ATCAGTCATG TGGATGCAAT ACCGCAGCCC CTGTCGCAAG GCGCGTTGGG AAGTGGGTTG 000800 000801 AGGGTGTGGT GGAGACAAGA AACGCATGCC TGATGGTGTC CTGGTTCAAC CGCTGCTCAG CCGGGTGGCC TTGGACAAAT 000880 000881 TTCCCAAGAG TACGGCAGTG CTGAAGTTCC CACATCCAGC CTCACAGGGA TGTTATGAAA TAGACACGAT GGAAAGAAAA 000960 000961 GCAACGCAAA GGTTTGGAAC ATGGTTCATA AGCCCTCTTA CCTCCAGGGA CAGCCTTCTT CTTGAACCCT CATCCTGTGA 001040 001041 GCCAGCCGAG GCCCCATTGG GGGGCAACTG TGGGGTGGGA AGGAGGCAAA TCCAGCTGTG TCCTTTTCTT GTCAAGAACA 001120 001121 GCTTAATTTA GAAGGAGGAC ATTTAGTGAG TACAATTAAC AGGTTTTTAA TATATTCACA AAGTTGTGCA AACAATGGCA 001200 001201 CAATATATTT TAGGTTATTT CACCATCCAA AAAAGAAGCT CCTTATCCTT AGACAACCCC TAGTCCTGGG CAGACCAGTT 001280 001281 TCTATCTCTA TAGATCTGTC TATATATTTT CTGGATATTT CAATACATGG AATTATTTAA TATGTTGACC TACCTTTTGA 001360 001361 TGCCATGCCC CACCTTTATG CTTGGCGCAT TCCAGCCTAA CAGCATCATT CATGGTACTT AACATTTTAT ATCATCGAGC 001440 001441 AATCAATTGT CTCCAACCTA TCTTTCTTCT GCCACTCCTC CTCTCTTCCC AGCCATCTTC CCATAATGAT TTTTCAAGAT 001520 001521 GCAAATATGC TCATATCTTA CTCAAGTTTA ATATCCCAAA AGGGCTCCCC ATTGCCCTCA GGCTGAATTC TGAAGCCCTT 001600 001601 CCCAAAGCCT GCGAGGGTCT GCCGCATCTA GCCCCAGTGA CCTCTTCCTC TTGGGCTACA GCTCATAGAT GTCCTTCCAT 001680 001681 TCTCCTAGGG AGCCCTGTGC CCACCCACTT CGGGCTCCCA GGGACTGTGC TGCTCCCCGT CACTCTCCCT GCCCATCTCT 001760 001761 TCCTCCTGTG CTAGGTCTCT AATCAAGTGG CCACTCTGGG AAACCCTCCT TGACTTTTTT TTTTTTTTGA GACAGTTACT 001840 001841 GTATTTATGG TTACCTTTAT TTCCTAATTA GGCACAGTGT TAGAGTTTGC TATTTACAGT AGCTATTTCT ATGTGTAATA 001920 001921 AAAAGGACTC ATCCTACATT TAAAAATATT ATAATCATTT GCAGACATGG AAGAAATAAA ATAGGGGGCA TCTGAATGAC 002000 002001 TGAGTTTGGA AAACAGAGTC CGATACCATT TAATCATCAG AATGGCTGGT GCTGCTGGCA AGGGAATGTT ATTGCTCCTA 002080 002081 CATGGAGGAC CAGGAAGGGG ATTGTTCCAG GGTCACAGGG CCTGAGCTTG GACCAGAGGA GTTGAAGACC ATTTCCACCA 002160 002161 AGGCCATTTC CATTCCAAGA TGTAGGCTAA GATTATTGCA GCAAAGATAG CATCTCCCCT AGGTTTAGAA ACGAGAACTA 002240 002241 GATGGGAGGT AGTCCCATGC TTCTGAAGGA GAAACTGATG CAGGGAGAAG GGCTGAGGCA CA |
Predicted Small Protein
Name | NONHSAT104506_smProtein_2081:2209 |
Length | 43 |
Molecular weight | 4755.4154 |
Aromaticity | 0.0 |
Instability index | 47.9452380952 |
Isoelectric point | 6.12921142578 |
Runs | 8 |
Runs residual | 0.0143158529234 |
Runs probability | 0.0130608549726 |
Amino acid sequence | MEDQEGDCSRVTGPELGPEELKTISTKAISIPRCRLRLLQQR |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHHEELLLLEEELHHHHHHHHLL |
PRMN | - |
PiMo | - |