Difference between revisions of "NONHSAT126268"

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sequence = <dnaseq>CTAGCTGGCACTGAACACTCACAGGCGACAGATGGAAAAGTTTCCGACCAACGGGAAGGTTACGATCTGGTACCAGTCCAGCACTGACAAATGGAGATATGAGCTCACTCACTCACAGCTGTGCTCACCTTCATGGGAAGAGTCGGCCCTCTACTCCAGTACGATGACACACAAACCCTGGCTGCACTGGGGATTATGGGATCGGCTTCTCTGAAACTCTCTTACTTTTTAAAAATCCTGTAGAAGGATCAGGTAACAGGAAAATGGCCGGTGAATTCTGTAAAAGGAAGTGAGTAGAACTGTTTTGGGTTAGAAAAGAAGCACTTTAGGCAGCCACCATGGGAAGAAGGCGGGTCACCTTCTCACTGAAGATAAGAGACCAAGTGCTGATGGACAGCAACAGGCAGTGTCTGAAAACTAGTCCGATACCATCATGGTCTTTGAGGGAAAATCTGATTCCACTGGGGTTTCCATGTCAATAGTGGACTCAAATTTAAAAAGTCTCCAGTCCATTTCCAGAAGTACAAGTGTTTTCTACATGAGTAGAGGAATCAGAAAGAAACCAACTCAACTCTTTC</dnaseq>|
 
sequence = <dnaseq>CTAGCTGGCACTGAACACTCACAGGCGACAGATGGAAAAGTTTCCGACCAACGGGAAGGTTACGATCTGGTACCAGTCCAGCACTGACAAATGGAGATATGAGCTCACTCACTCACAGCTGTGCTCACCTTCATGGGAAGAGTCGGCCCTCTACTCCAGTACGATGACACACAAACCCTGGCTGCACTGGGGATTATGGGATCGGCTTCTCTGAAACTCTCTTACTTTTTAAAAATCCTGTAGAAGGATCAGGTAACAGGAAAATGGCCGGTGAATTCTGTAAAAGGAAGTGAGTAGAACTGTTTTGGGTTAGAAAAGAAGCACTTTAGGCAGCCACCATGGGAAGAAGGCGGGTCACCTTCTCACTGAAGATAAGAGACCAAGTGCTGATGGACAGCAACAGGCAGTGTCTGAAAACTAGTCCGATACCATCATGGTCTTTGAGGGAAAATCTGATTCCACTGGGGTTTCCATGTCAATAGTGGACTCAAATTTAAAAAGTCTCCAGTCCATTTCCAGAAGTACAAGTGTTTTCTACATGAGTAGAGGAATCAGAAAGAAACCAACTCAACTCTTTC</dnaseq>|
 
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[[Category:Antisense]][[Category:NONHSAG050090]]
+
[[Category:Antisense]][[Category:NONHSAG050090]][[Category:Transcripts]]

Latest revision as of 06:57, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT126268

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

578 nt

Genomic location

chr8-:42027128..42029225

Exon number

2

Exons

42027128..42027682,42029203..42029225

Genome context

Sequence
000001 CTAGCTGGCA CTGAACACTC ACAGGCGACA GATGGAAAAG TTTCCGACCA ACGGGAAGGT TACGATCTGG TACCAGTCCA 000080
000081 GCACTGACAA ATGGAGATAT GAGCTCACTC ACTCACAGCT GTGCTCACCT TCATGGGAAG AGTCGGCCCT CTACTCCAGT 000160
000161 ACGATGACAC ACAAACCCTG GCTGCACTGG GGATTATGGG ATCGGCTTCT CTGAAACTCT CTTACTTTTT AAAAATCCTG 000240
000241 TAGAAGGATC AGGTAACAGG AAAATGGCCG GTGAATTCTG TAAAAGGAAG TGAGTAGAAC TGTTTTGGGT TAGAAAAGAA 000320
000321 GCACTTTAGG CAGCCACCAT GGGAAGAAGG CGGGTCACCT TCTCACTGAA GATAAGAGAC CAAGTGCTGA TGGACAGCAA 000400
000401 CAGGCAGTGT CTGAAAACTA GTCCGATACC ATCATGGTCT TTGAGGGAAA ATCTGATTCC ACTGGGGTTT CCATGTCAAT 000480
000481 AGTGGACTCA AATTTAAAAA GTCTCCAGTC CATTTCCAGA AGTACAAGTG TTTTCTACAT GAGTAGAGGA ATCAGAAAGA 000560
000561 AACCAACTCA ACTCTTTC
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Predicted Small Protein

Name NONHSAT126268_smProtein_338:481
Length 48
Molecular weight 5489.4291
Aromaticity 0.063829787234
Instability index 55.8553191489
Isoelectric point 10.762878418
Runs 7
Runs residual 0.0173404255319
Runs probability 0.0345976228329
Amino acid sequence MGRRRVTFSLKIRDQVLMDSNRQCLKTSPIPSWSLRENLIPLGFPCQ
Secondary structure LLLEEEEEEEEELLLEEELLLLLLLLLLLLLLLLHHHLLLLLLLLLL
PRMN -
PiMo -