Difference between revisions of "NONHSAT126302"
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sequence = <dnaseq>ACACTCGGCGAGAGGGGTTGAGATTGTTTTATTCCACTCCAGGTGTTGCTGTCCTCTTGGGTTCCACTTCGGATTTTGAACCCCTGTATTTTCTTTTCAAAACCCCCTTTTCCAGTGGAAATGCTCTGTTGTTAAAAAGGAAGAAACTGTCTTTCTGAAACTGACATCACGATGCTCCCAGATTTTATGCTGGTTCTCATCGTCCTTGGCATCCCTTCCTCAGgaatggttccagtgtctaggaatgcaagaggaaataaaaacaaagccattttctaataagctctcagctgggcatcatggctcacacctgtaatcccaacactttgggaggccaagACGGAAAGTGCACCTTCTGACAGTGGTAACACAGGTGGAGATGTATGCTGTGCGTGAAAGAGCAGAGCTGCTTGCTGCCCCTGGATCTTGGTGAGGAGCAGGATTCCTGTACCTTCACAGGGAGCACAGCTGCCCACCACAGGTTTCAACTCAATCGCCGAAAATGAAGATGCCC</dnaseq>| | sequence = <dnaseq>ACACTCGGCGAGAGGGGTTGAGATTGTTTTATTCCACTCCAGGTGTTGCTGTCCTCTTGGGTTCCACTTCGGATTTTGAACCCCTGTATTTTCTTTTCAAAACCCCCTTTTCCAGTGGAAATGCTCTGTTGTTAAAAAGGAAGAAACTGTCTTTCTGAAACTGACATCACGATGCTCCCAGATTTTATGCTGGTTCTCATCGTCCTTGGCATCCCTTCCTCAGgaatggttccagtgtctaggaatgcaagaggaaataaaaacaaagccattttctaataagctctcagctgggcatcatggctcacacctgtaatcccaacactttgggaggccaagACGGAAAGTGCACCTTCTGACAGTGGTAACACAGGTGGAGATGTATGCTGTGCGTGAAAGAGCAGAGCTGCTTGCTGCCCCTGGATCTTGGTGAGGAGCAGGATTCCTGTACCTTCACAGGGAGCACAGCTGCCCACCACAGGTTTCAACTCAATCGCCGAAAATGAAGATGCCC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG050107]] | + | [[Category:Sense]][[Category:NONHSAG050107]][[Category:Transcripts]] |
Latest revision as of 06:58, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT126302 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
514 nt |
| Genomic location |
chr8+:42552519..42563901 |
| Exon number |
4 |
| Exons |
42552519..42552741,42554555..42554670,42559492..42559624,42563860..42563901 |
| Genome context |
|
| Sequence |
000001 ACACTCGGCG AGAGGGGTTG AGATTGTTTT ATTCCACTCC AGGTGTTGCT GTCCTCTTGG GTTCCACTTC GGATTTTGAA 000080
000081 CCCCTGTATT TTCTTTTCAA AACCCCCTTT TCCAGTGGAA ATGCTCTGTT GTTAAAAAGG AAGAAACTGT CTTTCTGAAA 000160 000161 CTGACATCAC GATGCTCCCA GATTTTATGC TGGTTCTCAT CGTCCTTGGC ATCCCTTCCT CAGgaatggt tccagtgtct 000240 000241 aggaatgcaa gaggaaataa aaacaaagcc attttctaat aagctctcag ctgggcatca tggctcacac ctgtaatccc 000320 000321 aacactttgg gaggccaagA CGGAAAGTGC ACCTTCTGAC AGTGGTAACA CAGGTGGAGA TGTATGCTGT GCGTGAAAGA 000400 000401 GCAGAGCTGC TTGCTGCCCC TGGATCTTGG TGAGGAGCAG GATTCCTGTA CCTTCACAGG GAGCACAGCT GCCCACCACA 000480 000481 GGTTTCAACT CAATCGCCGA AAATGAAGAT GCCC |
Predicted Small Protein
| Name | NONHSAT126302_smProtein_383:505 |
| Length | 41 |
| Molecular weight | 4564.1687 |
| Aromaticity | 0.05 |
| Instability index | 90.895 |
| Isoelectric point | 6.69366455078 |
| Runs | 7 |
| Runs residual | 0.00302419354839 |
| Runs probability | 0.0127816892523 |
| Amino acid sequence | MLCVKEQSCLLPLDLGEEQDSCTFTGSTAAHHRFQLNRRK |
| Secondary structure | LEEEELLLEELLLLLLLLLLLLLLLLLHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
