Difference between revisions of "NONHSAT105112"

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sequence = <dnaseq>AAGAATGCTCATGTTTGACCCAGTTCCTGTTAAGCAAGAGGCCCGTGGACCCTGTCTCGGTGTCATACTCATCTAATTACATGGAATCCATGAAGCCCAACAAGTATGGGGTCATCTACTCCACACAATTGCCTGATGAGTTCTTTCAGACCCTAGAAGGCCTGTGGCATGGAATACAGATGGAGCCAGTGGACTTCATGGTGAGCAAGCGGAGTTCACCTCCTTCTGCTGGGAATTTGCACCCCTCTCTCAAGTTCCTATCCTCACACCAGAGAGCCTCGCCTGGGTTGAGCATGCCTTCTTCCAGCCCACCAATGAAAATACTCATCCCCTTCTCCAGGCTGGCAGCCTTTTGACGTGCCACTTGTCCATGCCGCAGATGATGGCAGCTGCCCTCTCCTGGCACAGAATATGGAGCCTGGGGATCTTGCTGGTCATCCAGCCGGTGGTGGTGCAGCCCATCCCCTTTATGTACATGAGTCACCTCCAGGAGCCTCTCATGGTCTCCTTGAGGAGGAGGAGGAGGAAGAGGTCTTCCATGGAGGAGATGAAAAATTCCAGTAGTAGCATGCAAGTACCTGTAATTGAATCATAAGAAAATCCTGTACCAGAGAAAAAAATTAAAATAGAACCTGGGATTGAACCACAGAGGACGGATTATCCTGAAGAAATGTCACCCCCCCCTTAATGAACTCAGTGTTCCCCCCCACAAGCATTGTTGCAAGAGAATCACCCTTTGGTCATCTTGCAGCCTGGGAAGAGACCTTTACCTGTGGAATCCCCGGATACTCGAAGTGGAGGATACACAGATGTGATTACGATGGATGCAACAAAGTGTACGCTAAAAGCTCCCACTTGAAAGCACACAGAAGACGACACACAGAAAAACCCTACAAATGTACATGGGAAGGATGCACATGGACGTTTGCTCGGTCTGATGAACTAAAAAGACATTTAGGAAAACATACTGGAATCAAACCTTTACAGTGTCCGGACTGTAACCGTAGCTTTTCCCGTCCCAA</dnaseq>|
 
sequence = <dnaseq>AAGAATGCTCATGTTTGACCCAGTTCCTGTTAAGCAAGAGGCCCGTGGACCCTGTCTCGGTGTCATACTCATCTAATTACATGGAATCCATGAAGCCCAACAAGTATGGGGTCATCTACTCCACACAATTGCCTGATGAGTTCTTTCAGACCCTAGAAGGCCTGTGGCATGGAATACAGATGGAGCCAGTGGACTTCATGGTGAGCAAGCGGAGTTCACCTCCTTCTGCTGGGAATTTGCACCCCTCTCTCAAGTTCCTATCCTCACACCAGAGAGCCTCGCCTGGGTTGAGCATGCCTTCTTCCAGCCCACCAATGAAAATACTCATCCCCTTCTCCAGGCTGGCAGCCTTTTGACGTGCCACTTGTCCATGCCGCAGATGATGGCAGCTGCCCTCTCCTGGCACAGAATATGGAGCCTGGGGATCTTGCTGGTCATCCAGCCGGTGGTGGTGCAGCCCATCCCCTTTATGTACATGAGTCACCTCCAGGAGCCTCTCATGGTCTCCTTGAGGAGGAGGAGGAGGAAGAGGTCTTCCATGGAGGAGATGAAAAATTCCAGTAGTAGCATGCAAGTACCTGTAATTGAATCATAAGAAAATCCTGTACCAGAGAAAAAAATTAAAATAGAACCTGGGATTGAACCACAGAGGACGGATTATCCTGAAGAAATGTCACCCCCCCCTTAATGAACTCAGTGTTCCCCCCCACAAGCATTGTTGCAAGAGAATCACCCTTTGGTCATCTTGCAGCCTGGGAAGAGACCTTTACCTGTGGAATCCCCGGATACTCGAAGTGGAGGATACACAGATGTGATTACGATGGATGCAACAAAGTGTACGCTAAAAGCTCCCACTTGAAAGCACACAGAAGACGACACACAGAAAAACCCTACAAATGTACATGGGAAGGATGCACATGGACGTTTGCTCGGTCTGATGAACTAAAAAGACATTTAGGAAAACATACTGGAATCAAACCTTTACAGTGTCCGGACTGTAACCGTAGCTTTTCCCGTCCCAA</dnaseq>|
 
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[[Category:Intronic(S)]][[Category:NONHSAG042233]]
+
[[Category:Intronic(S)]][[Category:NONHSAG042233]][[Category:Transcripts]]

Latest revision as of 01:35, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT105112

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

1022 nt

Genomic location

chr5-:171681422..171682443

Exon number

1

Exons

171681422..171682443

Genome context

Sequence
000001 AAGAATGCTC ATGTTTGACC CAGTTCCTGT TAAGCAAGAG GCCCGTGGAC CCTGTCTCGG TGTCATACTC ATCTAATTAC 000080
000081 ATGGAATCCA TGAAGCCCAA CAAGTATGGG GTCATCTACT CCACACAATT GCCTGATGAG TTCTTTCAGA CCCTAGAAGG 000160
000161 CCTGTGGCAT GGAATACAGA TGGAGCCAGT GGACTTCATG GTGAGCAAGC GGAGTTCACC TCCTTCTGCT GGGAATTTGC 000240
000241 ACCCCTCTCT CAAGTTCCTA TCCTCACACC AGAGAGCCTC GCCTGGGTTG AGCATGCCTT CTTCCAGCCC ACCAATGAAA 000320
000321 ATACTCATCC CCTTCTCCAG GCTGGCAGCC TTTTGACGTG CCACTTGTCC ATGCCGCAGA TGATGGCAGC TGCCCTCTCC 000400
000401 TGGCACAGAA TATGGAGCCT GGGGATCTTG CTGGTCATCC AGCCGGTGGT GGTGCAGCCC ATCCCCTTTA TGTACATGAG 000480
000481 TCACCTCCAG GAGCCTCTCA TGGTCTCCTT GAGGAGGAGG AGGAGGAAGA GGTCTTCCAT GGAGGAGATG AAAAATTCCA 000560
000561 GTAGTAGCAT GCAAGTACCT GTAATTGAAT CATAAGAAAA TCCTGTACCA GAGAAAAAAA TTAAAATAGA ACCTGGGATT 000640
000641 GAACCACAGA GGACGGATTA TCCTGAAGAA ATGTCACCCC CCCCTTAATG AACTCAGTGT TCCCCCCCAC AAGCATTGTT 000720
000721 GCAAGAGAAT CACCCTTTGG TCATCTTGCA GCCTGGGAAG AGACCTTTAC CTGTGGAATC CCCGGATACT CGAAGTGGAG 000800
000801 GATACACAGA TGTGATTACG ATGGATGCAA CAAAGTGTAC GCTAAAAGCT CCCACTTGAA AGCACACAGA AGACGACACA 000880
000881 CAGAAAAACC CTACAAATGT ACATGGGAAG GATGCACATG GACGTTTGCT CGGTCTGATG AACTAAAAAG ACATTTAGGA 000960
000961 AAACATACTG GAATCAAACC TTTACAGTGT CCGGACTGTA ACCGTAGCTT TTCCCGTCCC AA
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Predicted Small Protein

Name NONHSAT105112_smProtein_80:355
Length 92
Molecular weight 10123.6241
Aromaticity 0.0989010989011
Instability index 67.0538461538
Isoelectric point 9.22320556641
Runs 11
Runs residual 0.0125915750916
Runs probability 0.0276452923512
Amino acid sequence MESMKPNKYGVIYSTQLPDEFFQTLEGLWHGIQMEPVDFMVSKRSSPPSAGNLHPSLKFL
SSHQRASPGLSMPSSSPPMKILIPFSRLAAF
Secondary structure LLLLLLLLEEEEEELLLLHHHHHHHHHHHHLEEELLLLEEEELLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLEEEELLLLLLLL
PRMN -
PiMo -