Difference between revisions of "NONHSAT008721"

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sequence = <dnaseq>CTGGAGAAGAGGTCTTGGTGGTATCCTGGACCTTTTATTAGCATTTGAATCTAGAGGAAGCTCTCCCTGGGGCCAGGGGATCACCTCTCCTGGACCAGGAGGTTAGCAGAATGTTGCAGTCATATCCTGCAACATTCCTCCCCATCTTCCAACCAAAATAATTCGTGGGGAGGAGactaacacatatggaccacctacacaagGCTTCCCAGATGACCACCAAGGTGGAAGGGATGATGATGTCCAGGCAGAAGGGAGCTAGGCCGGCCCAGGCTTTTCCTCTAGGCACAGCGGACTCCAGGTTCAGCCTTCCCGGATGGTTAGCACTGGGCATTGGCATTTGCAAAAAAACTCTAAGCATTAAGCAAAACTTGTAGGAGTGGAAGATACAGCGTTCTGGACCTCCAGTCCTAATACCCAGCCACACCCCAGCAGCTATGCATGGTTCCATGGGAGAGCAGGCATAGCCCATCCTGCTGGCATATAGTCCAGCCATATCTTCCAATGCCCACCTGGAGACTAAGCCGAGTTCTGCCCAGCAACAGGAGCTCAGAGCTCCAGAGAGCCTCTCCTGGGGTGCAGACTCAGGAGATCTTAGCTCAGGAGCAGACTTAGCCTGACTTCCTCTTTTATAGGAGGAGACAGACTTAGTTACAGAGGAAACCAGAGTTGTTATAAATAGCAAGGAAGGGAGAAACCTGCTATGGATTACA</dnaseq>|
 
sequence = <dnaseq>CTGGAGAAGAGGTCTTGGTGGTATCCTGGACCTTTTATTAGCATTTGAATCTAGAGGAAGCTCTCCCTGGGGCCAGGGGATCACCTCTCCTGGACCAGGAGGTTAGCAGAATGTTGCAGTCATATCCTGCAACATTCCTCCCCATCTTCCAACCAAAATAATTCGTGGGGAGGAGactaacacatatggaccacctacacaagGCTTCCCAGATGACCACCAAGGTGGAAGGGATGATGATGTCCAGGCAGAAGGGAGCTAGGCCGGCCCAGGCTTTTCCTCTAGGCACAGCGGACTCCAGGTTCAGCCTTCCCGGATGGTTAGCACTGGGCATTGGCATTTGCAAAAAAACTCTAAGCATTAAGCAAAACTTGTAGGAGTGGAAGATACAGCGTTCTGGACCTCCAGTCCTAATACCCAGCCACACCCCAGCAGCTATGCATGGTTCCATGGGAGAGCAGGCATAGCCCATCCTGCTGGCATATAGTCCAGCCATATCTTCCAATGCCCACCTGGAGACTAAGCCGAGTTCTGCCCAGCAACAGGAGCTCAGAGCTCCAGAGAGCCTCTCCTGGGGTGCAGACTCAGGAGATCTTAGCTCAGGAGCAGACTTAGCCTGACTTCCTCTTTTATAGGAGGAGACAGACTTAGTTACAGAGGAAACCAGAGTTGTTATAAATAGCAAGGAAGGGAGAAACCTGCTATGGATTACA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG003911]]
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[[Category:Intergenic]][[Category:NONHSAG003911]][[Category:Transcripts]]

Latest revision as of 19:50, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT008721

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

713 nt

Genomic location

chr1+:200994270..200996204

Exon number

3

Exons

200994270..200994472,200994632..200994747,200995811..200996204

Genome context

Sequence
000001 CTGGAGAAGA GGTCTTGGTG GTATCCTGGA CCTTTTATTA GCATTTGAAT CTAGAGGAAG CTCTCCCTGG GGCCAGGGGA 000080
000081 TCACCTCTCC TGGACCAGGA GGTTAGCAGA ATGTTGCAGT CATATCCTGC AACATTCCTC CCCATCTTCC AACCAAAATA 000160
000161 ATTCGTGGGG AGGAGactaa cacatatgga ccacctacac aagGCTTCCC AGATGACCAC CAAGGTGGAA GGGATGATGA 000240
000241 TGTCCAGGCA GAAGGGAGCT AGGCCGGCCC AGGCTTTTCC TCTAGGCACA GCGGACTCCA GGTTCAGCCT TCCCGGATGG 000320
000321 TTAGCACTGG GCATTGGCAT TTGCAAAAAA ACTCTAAGCA TTAAGCAAAA CTTGTAGGAG TGGAAGATAC AGCGTTCTGG 000400
000401 ACCTCCAGTC CTAATACCCA GCCACACCCC AGCAGCTATG CATGGTTCCA TGGGAGAGCA GGCATAGCCC ATCCTGCTGG 000480
000481 CATATAGTCC AGCCATATCT TCCAATGCCC ACCTGGAGAC TAAGCCGAGT TCTGCCCAGC AACAGGAGCT CAGAGCTCCA 000560
000561 GAGAGCCTCT CCTGGGGTGC AGACTCAGGA GATCTTAGCT CAGGAGCAGA CTTAGCCTGA CTTCCTCTTT TATAGGAGGA 000640
000641 GACAGACTTA GTTACAGAGG AAACCAGAGT TGTTATAAAT AGCAAGGAAG GGAGAAACCT GCTATGGATT ACA
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Predicted Small Protein

Name NONHSAT008721_smProtein_185:376
Length 64
Molecular weight 6886.1033
Aromaticity 0.047619047619
Instability index 43.6063492063
Isoelectric point 10.2977905273
Runs 8
Runs residual 0.0179786200194
Runs probability 0.0227654124713
Amino acid sequence MDHLHKASQMTTKVEGMMMSRQKGARPAQAFPLGTADSRFSLPGWLALGIGICKKTLSIK
QNL
Secondary structure LLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLHHHHHLLEEHHHHHHHH
LLL
PRMN -
PiMo -