Difference between revisions of "NONHSAT060805"

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sequence = <dnaseq>TTCTGCCTCCGAGGAGTCCCTTACTGATGATCATAGGCTCCTCAAGGTCATCAGCCAGGGCAGCTTTGCAGAAGTCAAGGCAGCTGGCCCAGCACATTCTCACTGGGACCAAGATGGCTGTGGAGGTCACCCCAACAGGGCAGCAGGGCTCCTGCAGCCCCCAGGGTCTGTACTGCAGGGACCATATGATGAAGGCCCTTAATCACCCGAAGATCATCAGACCCACGTGGCTGGCACCGAGAACAGGCTGTTCCTAGTCATGGATTAAGCCAGCTCGGGAGAGCTATCCGACTTCACCCTCGAATTCTTCTTGAAGGGGGAAGAGGCCTGAGGCAAGTTCCAGCAAATAGGATATTCCATGCAGTGAGGCTTCCAGAAGGAAATTATCCACAGGGATCTGAAGTCAGAGAACTTCCCTGAGGAGGCTCAGCACGACATGGAAACAACAGACGCTGGCTTTGATACCAGATTCACCGTAGGCTGAAAGCTGATCCCCTTCGGTGGGAGCTCCTCTTATACAGCCTCAGAACTGTTCCCCGGGACAAAAGTACGATGTACCCTGGTGGGCGTGTGGAGCCTGGGAGCCACTGTCTACACCATGGTGGCCGAGGACTGCCATCTGTTGGGCAGACTTTTGTGGGGCTGAGGACGACACTAATACTGTGTGAATGGTGACAGGCGATCCCATTCCTTGTTTCCATAGAACGAGAATGCCTCATAAACACAATTCTGGCCGTTGACTCCAGGGAGAGGCCCTCACTAGCCCTCATCATGGGGCGCCTATGGATTAACATGGGCCAGGAGGAGACGCTAACTAAGGCCATACTGGGAGCTGCTCCCCGATCACCCGGAGTCTGGAAAGCGCTCCTGGTGTCCCCGGGAGATGAGGCAGACCATGTCCCATCGTTGTTGAAAAAATATGTGATGATACCATGGCCGGCTATCAGATCCTGGGCTGCAGGAAACCCGAGGTGTGGGGCGCCATCATCACAGTGAAGCTCCTGCCTTCAGCAGATCCTACTACTTGCCGCCATTCTCCCCCATCACATGAAAAAAACTCCTC</dnaseq>|
 
sequence = <dnaseq>TTCTGCCTCCGAGGAGTCCCTTACTGATGATCATAGGCTCCTCAAGGTCATCAGCCAGGGCAGCTTTGCAGAAGTCAAGGCAGCTGGCCCAGCACATTCTCACTGGGACCAAGATGGCTGTGGAGGTCACCCCAACAGGGCAGCAGGGCTCCTGCAGCCCCCAGGGTCTGTACTGCAGGGACCATATGATGAAGGCCCTTAATCACCCGAAGATCATCAGACCCACGTGGCTGGCACCGAGAACAGGCTGTTCCTAGTCATGGATTAAGCCAGCTCGGGAGAGCTATCCGACTTCACCCTCGAATTCTTCTTGAAGGGGGAAGAGGCCTGAGGCAAGTTCCAGCAAATAGGATATTCCATGCAGTGAGGCTTCCAGAAGGAAATTATCCACAGGGATCTGAAGTCAGAGAACTTCCCTGAGGAGGCTCAGCACGACATGGAAACAACAGACGCTGGCTTTGATACCAGATTCACCGTAGGCTGAAAGCTGATCCCCTTCGGTGGGAGCTCCTCTTATACAGCCTCAGAACTGTTCCCCGGGACAAAAGTACGATGTACCCTGGTGGGCGTGTGGAGCCTGGGAGCCACTGTCTACACCATGGTGGCCGAGGACTGCCATCTGTTGGGCAGACTTTTGTGGGGCTGAGGACGACACTAATACTGTGTGAATGGTGACAGGCGATCCCATTCCTTGTTTCCATAGAACGAGAATGCCTCATAAACACAATTCTGGCCGTTGACTCCAGGGAGAGGCCCTCACTAGCCCTCATCATGGGGCGCCTATGGATTAACATGGGCCAGGAGGAGACGCTAACTAAGGCCATACTGGGAGCTGCTCCCCGATCACCCGGAGTCTGGAAAGCGCTCCTGGTGTCCCCGGGAGATGAGGCAGACCATGTCCCATCGTTGTTGAAAAAATATGTGATGATACCATGGCCGGCTATCAGATCCTGGGCTGCAGGAAACCCGAGGTGTGGGGCGCCATCATCACAGTGAAGCTCCTGCCTTCAGCAGATCCTACTACTTGCCGCCATTCTCCCCCATCACATGAAAAAAACTCCTC</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG024631]]
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[[Category:Intergenic]][[Category:NONHSAG024631]][[Category:Transcripts]]

Revision as of 10:55, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT060805

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1063 nt

Genomic location

chr19-:7005023..7006085

Exon number

1

Exons

7005023..7006085

Genome context

Sequence
000001 TTCTGCCTCC GAGGAGTCCC TTACTGATGA TCATAGGCTC CTCAAGGTCA TCAGCCAGGG CAGCTTTGCA GAAGTCAAGG 000080
000081 CAGCTGGCCC AGCACATTCT CACTGGGACC AAGATGGCTG TGGAGGTCAC CCCAACAGGG CAGCAGGGCT CCTGCAGCCC 000160
000161 CCAGGGTCTG TACTGCAGGG ACCATATGAT GAAGGCCCTT AATCACCCGA AGATCATCAG ACCCACGTGG CTGGCACCGA 000240
000241 GAACAGGCTG TTCCTAGTCA TGGATTAAGC CAGCTCGGGA GAGCTATCCG ACTTCACCCT CGAATTCTTC TTGAAGGGGG 000320
000321 AAGAGGCCTG AGGCAAGTTC CAGCAAATAG GATATTCCAT GCAGTGAGGC TTCCAGAAGG AAATTATCCA CAGGGATCTG 000400
000401 AAGTCAGAGA ACTTCCCTGA GGAGGCTCAG CACGACATGG AAACAACAGA CGCTGGCTTT GATACCAGAT TCACCGTAGG 000480
000481 CTGAAAGCTG ATCCCCTTCG GTGGGAGCTC CTCTTATACA GCCTCAGAAC TGTTCCCCGG GACAAAAGTA CGATGTACCC 000560
000561 TGGTGGGCGT GTGGAGCCTG GGAGCCACTG TCTACACCAT GGTGGCCGAG GACTGCCATC TGTTGGGCAG ACTTTTGTGG 000640
000641 GGCTGAGGAC GACACTAATA CTGTGTGAAT GGTGACAGGC GATCCCATTC CTTGTTTCCA TAGAACGAGA ATGCCTCATA 000720
000721 AACACAATTC TGGCCGTTGA CTCCAGGGAG AGGCCCTCAC TAGCCCTCAT CATGGGGCGC CTATGGATTA ACATGGGCCA 000800
000801 GGAGGAGACG CTAACTAAGG CCATACTGGG AGCTGCTCCC CGATCACCCG GAGTCTGGAA AGCGCTCCTG GTGTCCCCGG 000880
000881 GAGATGAGGC AGACCATGTC CCATCGTTGT TGAAAAAATA TGTGATGATA CCATGGCCGG CTATCAGATC CTGGGCTGCA 000960
000961 GGAAACCCGA GGTGTGGGGC GCCATCATCA CAGTGAAGCT CCTGCCTTCA GCAGATCCTA CTACTTGCCG CCATTCTCCC 001040
001041 CCATCACATG AAAAAAACTC CTC
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Predicted Small Protein

Name NONHSAT060805_smProtein_26:256
Length 77
Molecular weight 8261.5781
Aromaticity 0.0263157894737
Instability index 58.2407894737
Isoelectric point 10.5409545898
Runs 12
Runs residual 0.0164851784634
Runs probability 0.0420199611377
Amino acid sequence MIIGSSRSSARAALQKSRQLAQHILTGTKMAVEVTPTGQQGSCSPQGLYCRDHMMKALNH
PKIIRPTWLAPRTGCS
Secondary structure LEELLLLHHHHHHHHHHHHHHHHHHHLLLEEEEELLLLLLLLLLLLLLEEHHHHHHHLLL
LLEELLLLLLLLLLLL
PRMN -
PiMo -