Difference between revisions of "NONHSAT084901"
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sequence = <dnaseq>cttgtgttaggctcccagttgaatctcaaagcagagaaaCACTCAGGGAGATGGAACAGCTACAAGAAGCTGTGACCAAGCTTCTCCCCGCTGATTTGAGGCACTGTTTGCCTTCCTCTACTCTTAGTTTACAGACTCTACTGATCCCAGTCCTTGTAATCAGTTGTGTCCTTTCTTTGCACAGTATTTTTGCTTTAGAGCCCTAAAAGACAATGTGACCCACGCTCATCTCCAGCAAATAAGAAGGAATCTTGCTCACCAGCAGCATGGTGTCACGCTGCTGCACAGGTTCTGGAACCTCTGGCGGTCTCAGATTGAGCAGAAAAAGGAAAGAGAGCTGCTCCCCTTACTGCATGCTGCCTGGGACCACTA</dnaseq>| | sequence = <dnaseq>cttgtgttaggctcccagttgaatctcaaagcagagaaaCACTCAGGGAGATGGAACAGCTACAAGAAGCTGTGACCAAGCTTCTCCCCGCTGATTTGAGGCACTGTTTGCCTTCCTCTACTCTTAGTTTACAGACTCTACTGATCCCAGTCCTTGTAATCAGTTGTGTCCTTTCTTTGCACAGTATTTTTGCTTTAGAGCCCTAAAAGACAATGTGACCCACGCTCATCTCCAGCAAATAAGAAGGAATCTTGCTCACCAGCAGCATGGTGTCACGCTGCTGCACAGGTTCTGGAACCTCTGGCGGTCTCAGATTGAGCAGAAAAAGGAAAGAGAGCTGCTCCCCTTACTGCATGCTGCCTGGGACCACTA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG033720]] | + | [[Category:Sense]][[Category:NONHSAG033720]][[Category:Transcripts]] |
Revision as of 10:15, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT084901 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
372 nt |
| Genomic location |
chr22+:31976074..31979955 |
| Exon number |
2 |
| Exons |
31976074..31976350,31979861..31979955 |
| Genome context |
|
| Sequence |
000001 cttgtgttag gctcccagtt gaatctcaaa gcagagaaaC ACTCAGGGAG ATGGAACAGC TACAAGAAGC TGTGACCAAG 000080
000081 CTTCTCCCCG CTGATTTGAG GCACTGTTTG CCTTCCTCTA CTCTTAGTTT ACAGACTCTA CTGATCCCAG TCCTTGTAAT 000160 000161 CAGTTGTGTC CTTTCTTTGC ACAGTATTTT TGCTTTAGAG CCCTAAAAGA CAATGTGACC CACGCTCATC TCCAGCAAAT 000240 000241 AAGAAGGAAT CTTGCTCACC AGCAGCATGG TGTCACGCTG CTGCACAGGT TCTGGAACCT CTGGCGGTCT CAGATTGAGC 000320 000321 AGAAAAAGGA AAGAGAGCTG CTCCCCTTAC TGCATGCTGC CTGGGACCAC TA |
Predicted Small Protein
| Name | NONHSAT084901_smProtein_50:205 |
| Length | 52 |
| Molecular weight | 5582.6401 |
| Aromaticity | 0.0196078431373 |
| Instability index | 67.2607843137 |
| Isoelectric point | 5.34783935547 |
| Runs | 12 |
| Runs residual | 0.0810522228693 |
| Runs probability | 0.027549608432 |
| Amino acid sequence | MEQLQEAVTKLLPADLRHCLPSSTLSLQTLLIPVLVISCVLSLHSIFALEP |
| Secondary structure | LHHHHHHHHHHLLLLHHHLLLLLLLLHHHHHLLLEEEEHHHLHHHHHHLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTToooooo |
