Difference between revisions of "NONHSAT127586"
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sequence = <dnaseq>TCAGTGTGTCAGTCACACCGGGATTCATTCACTGAGTTCCGGGAGCAAGGCAGCTTTTCAAGGCTGGGCACTAAACAGGGGGAGCTTTGTGAGTGCCTAGACTCCTCTGCCGGCCACCTGCTCTTCCTCTCCTTGGCTTCCACgaagaaagctgcatgagagcagggaattgctttgtccaatgctaatcactaaagcttagaatactgcttgttacatgGGCCAGAAGTCAAGAATAGGAGAGCAGCAGAAAACCACTAAATATGACAGCCAGCTTCACATGGttaggtggaaacatcattgatgcaggatttttctttgtctccttaccagttggggacctctggctggtgatgttacctgccacaggatgtgccctgcccaatcagcttgccaagtctagcttgtgcactggttcctgagttcttgtcctgtgcccaagaagaatgaggatgtgctgaccattgaaggtaaaagtatattctcttacatattttctttgacaaattatcaaaattaggaaatttaacattgaagtaaaatgtttttgaaatttatagctcatattcaaattttgtcaactgtcttaataaaacactttctagctattactttcttagttcacagtcagatatttcaattagttgtcatgtctgtgtagtctcctttaattggaaagaattccttagcctttgtttttgttgaccctgaaattattaaagggtacaaaccaattattttgtagaagagttcctgtctggtgtttcctcatcattaggttcaggttatgtttgacaggaaaaccatgatacattttatcgttggtgcctatcaaaaggcatgcactatttttccaatattggtagatttaatgttatccctttgttattgtggtattcatcaggtttctccactcagtaactactatttcccctttgtgatcaatatgcaatttgtaaagaagataacctgaggccatataaatatcctgtacctcatcaaactttaatcctctgtttttttaatccattgatgattccttttttttttttcctttcttttttttgaaacagagtcttgttctgttgaccaggctggaatgctgtggtgtgatctcgcctcatttcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgagactacaggtgcccgccaccacgcctggctaagttttgtatttttagtagagatggggtttcaccatattggccaagctgttctcgaactcctgaccttgtgatcttcccacttcaggctcccaaagtgctgggattacttacaggcatgagccactgtgcctggccccactgatgattttctaactcatatatgcttctatatttactggctagcacccaagccacctcttagttggactatttcactgcaacagtccccttcagctggtgagtctct</dnaseq>| | sequence = <dnaseq>TCAGTGTGTCAGTCACACCGGGATTCATTCACTGAGTTCCGGGAGCAAGGCAGCTTTTCAAGGCTGGGCACTAAACAGGGGGAGCTTTGTGAGTGCCTAGACTCCTCTGCCGGCCACCTGCTCTTCCTCTCCTTGGCTTCCACgaagaaagctgcatgagagcagggaattgctttgtccaatgctaatcactaaagcttagaatactgcttgttacatgGGCCAGAAGTCAAGAATAGGAGAGCAGCAGAAAACCACTAAATATGACAGCCAGCTTCACATGGttaggtggaaacatcattgatgcaggatttttctttgtctccttaccagttggggacctctggctggtgatgttacctgccacaggatgtgccctgcccaatcagcttgccaagtctagcttgtgcactggttcctgagttcttgtcctgtgcccaagaagaatgaggatgtgctgaccattgaaggtaaaagtatattctcttacatattttctttgacaaattatcaaaattaggaaatttaacattgaagtaaaatgtttttgaaatttatagctcatattcaaattttgtcaactgtcttaataaaacactttctagctattactttcttagttcacagtcagatatttcaattagttgtcatgtctgtgtagtctcctttaattggaaagaattccttagcctttgtttttgttgaccctgaaattattaaagggtacaaaccaattattttgtagaagagttcctgtctggtgtttcctcatcattaggttcaggttatgtttgacaggaaaaccatgatacattttatcgttggtgcctatcaaaaggcatgcactatttttccaatattggtagatttaatgttatccctttgttattgtggtattcatcaggtttctccactcagtaactactatttcccctttgtgatcaatatgcaatttgtaaagaagataacctgaggccatataaatatcctgtacctcatcaaactttaatcctctgtttttttaatccattgatgattccttttttttttttcctttcttttttttgaaacagagtcttgttctgttgaccaggctggaatgctgtggtgtgatctcgcctcatttcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgagactacaggtgcccgccaccacgcctggctaagttttgtatttttagtagagatggggtttcaccatattggccaagctgttctcgaactcctgaccttgtgatcttcccacttcaggctcccaaagtgctgggattacttacaggcatgagccactgtgcctggccccactgatgattttctaactcatatatgcttctatatttactggctagcacccaagccacctcttagttggactatttcactgcaacagtccccttcagctggtgagtctct</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG050689]] | + | [[Category:Intergenic]][[Category:NONHSAG050689]][[Category:Transcripts]] |
Latest revision as of 07:03, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127586 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1462 nt |
Genomic location |
chr8+:88986393..89031341 |
Exon number |
6 |
Exons |
88986393..88986535,89015955..89016031,89022371..89022434,89022745..89022931,89023710..89024642,89031284..89031341 |
Genome context |
|
Sequence |
000001 TCAGTGTGTC AGTCACACCG GGATTCATTC ACTGAGTTCC GGGAGCAAGG CAGCTTTTCA AGGCTGGGCA CTAAACAGGG 000080
000081 GGAGCTTTGT GAGTGCCTAG ACTCCTCTGC CGGCCACCTG CTCTTCCTCT CCTTGGCTTC CACgaagaaa gctgcatgag 000160 000161 agcagggaat tgctttgtcc aatgctaatc actaaagctt agaatactgc ttgttacatg GGCCAGAAGT CAAGAATAGG 000240 000241 AGAGCAGCAG AAAACCACTA AATATGACAG CCAGCTTCAC ATGGttaggt ggaaacatca ttgatgcagg atttttcttt 000320 000321 gtctccttac cagttgggga cctctggctg gtgatgttac ctgccacagg atgtgccctg cccaatcagc ttgccaagtc 000400 000401 tagcttgtgc actggttcct gagttcttgt cctgtgccca agaagaatga ggatgtgctg accattgaag gtaaaagtat 000480 000481 attctcttac atattttctt tgacaaatta tcaaaattag gaaatttaac attgaagtaa aatgtttttg aaatttatag 000560 000561 ctcatattca aattttgtca actgtcttaa taaaacactt tctagctatt actttcttag ttcacagtca gatatttcaa 000640 000641 ttagttgtca tgtctgtgta gtctccttta attggaaaga attccttagc ctttgttttt gttgaccctg aaattattaa 000720 000721 agggtacaaa ccaattattt tgtagaagag ttcctgtctg gtgtttcctc atcattaggt tcaggttatg tttgacagga 000800 000801 aaaccatgat acattttatc gttggtgcct atcaaaaggc atgcactatt tttccaatat tggtagattt aatgttatcc 000880 000881 ctttgttatt gtggtattca tcaggtttct ccactcagta actactattt cccctttgtg atcaatatgc aatttgtaaa 000960 000961 gaagataacc tgaggccata taaatatcct gtacctcatc aaactttaat cctctgtttt tttaatccat tgatgattcc 001040 001041 tttttttttt ttcctttctt ttttttgaaa cagagtcttg ttctgttgac caggctggaa tgctgtggtg tgatctcgcc 001120 001121 tcatttcaac ctccacctcc caggttcaag cgattctcct gcctcagcct cccgagtagc tgagactaca ggtgcccgcc 001200 001201 accacgcctg gctaagtttt gtatttttag tagagatggg gtttcaccat attggccaag ctgttctcga actcctgacc 001280 001281 ttgtgatctt cccacttcag gctcccaaag tgctgggatt acttacaggc atgagccact gtgcctggcc ccactgatga 001360 001361 ttttctaact catatatgct tctatattta ctggctagca cccaagccac ctcttagttg gactatttca ctgcaacagt 001440 001441 ccccttcagc tggtgagtct ct |
Predicted Small Protein
Name | NONHSAT127586_smProtein_263:421 |
Length | 53 |
Molecular weight | 5420.3036 |
Aromaticity | 0.115384615385 |
Instability index | 46.9980769231 |
Isoelectric point | 4.20709228516 |
Runs | 11 |
Runs residual | 0.0611690569318 |
Runs probability | 0.0653353888648 |
Amino acid sequence | MTASFTWLGGNIIDAGFFFVSLPVGDLWLVMLPATGCALPNQLAKSSLCTGS |
Secondary structure | LEEEEEELLLLEELLLEEEEELLLLLEEEEEELLLLLLLHHHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii |