Difference between revisions of "ENST00000492250.1"
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sequence = <dnaseq>TTTTCATTCCCGTTGTTATGGAGATTGCGTACCCACTGCAGAGTGCTGAAGACGGGGTAGCCACGAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTAAGCCTTGAGCTGGCCAATGATCCCTTCAACCCCATAGTGGAATGAATAAACAGCTGATCTTGTTAAAACTCGCTTCAAAAAAAAAAGATATCAAATGATGAAATCACCCAAAATAGCTGGAATTACCGGCAGATTGTGTAGTGGTGAACCTATGGTTTTCTGAAGATATCTCTTACCCTGTGATTGACTGTCAGTTGGTGCAGAAAGTGAGATTGAAATGTAGTTTCTTTGCAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCA</dnaseq>| | sequence = <dnaseq>TTTTCATTCCCGTTGTTATGGAGATTGCGTACCCACTGCAGAGTGCTGAAGACGGGGTAGCCACGAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTAAGCCTTGAGCTGGCCAATGATCCCTTCAACCCCATAGTGGAATGAATAAACAGCTGATCTTGTTAAAACTCGCTTCAAAAAAAAAAGATATCAAATGATGAAATCACCCAAAATAGCTGGAATTACCGGCAGATTGTGTAGTGGTGAACCTATGGTTTTCTGAAGATATCTCTTACCCTGTGATTGACTGTCAGTTGGTGCAGAAAGTGAGATTGAAATGTAGTTTCTTTGCAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-TRPV2-1]][[Category:NONHSAG020957]] | + | [[Category:Intergenic]][[Category:lnc-TRPV2-1]][[Category:NONHSAG020957]][[Category:ENSG00000175061.13]] |
Revision as of 18:44, 15 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000492250.1 |
| Source |
Gencode19 |
| Same with |
lnc-TRPV2-1:17,NONHSAT145954 |
| Classification |
intergenic |
| Length |
565 nt |
| Genomic location |
chr17+:16342352..16344816 |
| Exon number |
4 |
| Exons |
16342352..16342374,16342974..16343017,16343499..16343567,16344388..16344816 |
| Genome context |
|
| Sequence |
000001 TTTTCATTCC CGTTGTTATG GAGATTGCGT ACCCACTGCA GAGTGCTGAA GACGGGGTAG CCACGAGGTT GCAAATTCGT 000080
000081 GAAGAATCAG CATCATGTTT GGCAGCTGAG TATTGGAGCC AGGAGCCTGC CATGAGGTTT TGAGAACAGA GTGCTGTTTT 000160 000161 AGAGCTGGCA GCAGCATCTC AGCCCAAGAG AAGGTAAGCC TTGAGCTGGC CAATGATCCC TTCAACCCCA TAGTGGAATG 000240 000241 AATAAACAGC TGATCTTGTT AAAACTCGCT TCAAAAAAAA AAGATATCAA ATGATGAAAT CACCCAAAAT AGCTGGAATT 000320 000321 ACCGGCAGAT TGTGTAGTGG TGAACCTATG GTTTTCTGAA GATATCTCTT ACCCTGTGAT TGACTGTCAG TTGGTGCAGA 000400 000401 AAGTGAGATT GAAATGTAGT TTCTTTGCAG GTTATATTCC CAGAGGATGT CAGTCCCAAG GACCAGTAGC TGCCATCAGT 000480 000481 TTGGATTCTG AAAACTAACT GGCATCAACA CTGGGTGTAG AAACATGCTT GCCTTATGTA TCAGAGGACA TGCTCAGCAG 000560 000561 ATCCA |
Predicted Small Protein
| Name | ENST00000492250.1_smProtein_17:142 |
| Length | 42 |
| Molecular weight | 4649.1555 |
| Aromaticity | 0.0975609756098 |
| Instability index | 88.5 |
| Isoelectric point | 4.30523681641 |
| Runs | 7 |
| Runs residual | 0.00523716893611 |
| Runs probability | 0.0143210437328 |
| Amino acid sequence | MEIAYPLQSAEDGVATRLQIREESASCLAAEYWSQEPAMRF |
| Secondary structure | LEEELLLLHHHHLHHHHHHHHHHHHHHHHHHHHLLLLLLLL |
| PRMN | - |
| PiMo | - |
