Difference between revisions of "NONHSAT087062"
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sequence = <dnaseq>GGAATGAAAGACCCGGCTGTGTCTTTCAGGTCTGATCTCAGAGCTGAAGCTGGCTGTGCCCTGGGGCCACATCGCAGCCAAAGCCTGGGGCTCCCTGCAGGGCCCTCCAGTTCTCTGCCTGCACGGCTGGCTGGACAATGCCAGCTCCTTCGACAGACTCATCCCTCTTCTCCCGCAAGACTTTTATTACGTTGCCATGGATTTCGGAGGTCATGGGCTCTCGTCCCATTACAGCCCAGGTGTCCCATATTACCTCCAGACTTTTGTGAGTGAGATCCGAAGAGTTGTGGCAGCCTTGAAATGGAATCGATTCTCCATTCTGGGCCACAGCTTCGGTGAGTACAGTGGCCAGGAGCTGACCGGGCCCGGAGTAGGGCTGGGAGGGAAGGATAGGAGCTGCTGCCCCACCCCTTTCCCCTGCACTTATGAGATCTGCAAAGAGAGATGAGAGGGTCAGTCAGAGGTTGACCACTGTACCCTCTGACCTCAGGCAACTGCCGCAAGGGACACAGGGATGAGGGAAATGTGGTCTTTTGAGTGGTCAGGTCTGATGAAGGGGACATCATGGCCCAGATGCTGAGCCCCCAGCCACCCAT</dnaseq>| | sequence = <dnaseq>GGAATGAAAGACCCGGCTGTGTCTTTCAGGTCTGATCTCAGAGCTGAAGCTGGCTGTGCCCTGGGGCCACATCGCAGCCAAAGCCTGGGGCTCCCTGCAGGGCCCTCCAGTTCTCTGCCTGCACGGCTGGCTGGACAATGCCAGCTCCTTCGACAGACTCATCCCTCTTCTCCCGCAAGACTTTTATTACGTTGCCATGGATTTCGGAGGTCATGGGCTCTCGTCCCATTACAGCCCAGGTGTCCCATATTACCTCCAGACTTTTGTGAGTGAGATCCGAAGAGTTGTGGCAGCCTTGAAATGGAATCGATTCTCCATTCTGGGCCACAGCTTCGGTGAGTACAGTGGCCAGGAGCTGACCGGGCCCGGAGTAGGGCTGGGAGGGAAGGATAGGAGCTGCTGCCCCACCCCTTTCCCCTGCACTTATGAGATCTGCAAAGAGAGATGAGAGGGTCAGTCAGAGGTTGACCACTGTACCCTCTGACCTCAGGCAACTGCCGCAAGGGACACAGGGATGAGGGAAATGTGGTCTTTTGAGTGGTCAGGTCTGATGAAGGGGACATCATGGCCCAGATGCTGAGCCCCCAGCCACCCAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG034059]] | + | [[Category:Sense]][[Category:NONHSAG034059]][[Category:Transcripts]] |
Revision as of 09:34, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT087062 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
596 nt |
| Genomic location |
chr22+:42950915..42951972 |
| Exon number |
3 |
| Exons |
42950915..42951093,42951238..42951351,42951670..42951972 |
| Genome context |
|
| Sequence |
000001 GGAATGAAAG ACCCGGCTGT GTCTTTCAGG TCTGATCTCA GAGCTGAAGC TGGCTGTGCC CTGGGGCCAC ATCGCAGCCA 000080
000081 AAGCCTGGGG CTCCCTGCAG GGCCCTCCAG TTCTCTGCCT GCACGGCTGG CTGGACAATG CCAGCTCCTT CGACAGACTC 000160 000161 ATCCCTCTTC TCCCGCAAGA CTTTTATTAC GTTGCCATGG ATTTCGGAGG TCATGGGCTC TCGTCCCATT ACAGCCCAGG 000240 000241 TGTCCCATAT TACCTCCAGA CTTTTGTGAG TGAGATCCGA AGAGTTGTGG CAGCCTTGAA ATGGAATCGA TTCTCCATTC 000320 000321 TGGGCCACAG CTTCGGTGAG TACAGTGGCC AGGAGCTGAC CGGGCCCGGA GTAGGGCTGG GAGGGAAGGA TAGGAGCTGC 000400 000401 TGCCCCACCC CTTTCCCCTG CACTTATGAG ATCTGCAAAG AGAGATGAGA GGGTCAGTCA GAGGTTGACC ACTGTACCCT 000480 000481 CTGACCTCAG GCAACTGCCG CAAGGGACAC AGGGATGAGG GAAATGTGGT CTTTTGAGTG GTCAGGTCTG ATGAAGGGGA 000560 000561 CATCATGGCC CAGATGCTGA GCCCCCAGCC ACCCAT |
Predicted Small Protein
| Name | NONHSAT087062_smProtein_137:268 |
| Length | 44 |
| Molecular weight | 4760.4927 |
| Aromaticity | 0.0697674418605 |
| Instability index | 79.9209302326 |
| Isoelectric point | 10.7366333008 |
| Runs | 8 |
| Runs residual | 0.0287431408414 |
| Runs probability | 0.0235492845787 |
| Amino acid sequence | MPAPSTDSSLFSRKTFITLPWISEVMGSRPITAQVSHITSRLL |
| Secondary structure | LLLLLLLLLLLLLLEEEELLHHHHLLLLLLEEEEEEHHHLLLL |
| PRMN | - |
| PiMo | - |
