Difference between revisions of "NONHSAT033912"

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sequence = <dnaseq>GTCAGGCCCTATCCTTTCATTAGCATATTTAAACAGCTCAGGGGCGGGGGAAGCTTGTAGGCCGGCTCCGGGGACAGTTATTGAGCACGCGCAGAGGCGGGGCGTCGGGTGCGCGCGAGCGGGCGGGCGGGCCGACCCGGAGGCGGGCTTCGGGAAGGGGCGGGGCCGGACTGCGGAAGGACCGCGAGGTgggggcgggggccgcgtccgcgcgcgcggggcggccgcggcggTGAGCCTGCGCGTCAGGGCCGCCGGCCTCTCCTTGGCTGTTGGAGGTGATAGGGGTCGAGGGGAGGGAAAAAGGGGCTGGCGTCAGCCGCCCCTGTGAGGTGGCCGTAGCGTGGACGAGTAAGAAGGGTTGAGTAAAGTGGACAAACACCTGGTTAGGAGAAGAGGGCAGGCCCGCAGCCGCCCTCCGGAGGAGGACTCGGGGCCTCGCGGGCGCCGGAGGAGGTTCCTGGGCCTCGGAgggccgccccggcgcgccgccccggcgcgagcgggcgcgggcgggggAGGGGAAGTGAGAGGTTGTTTATGACCGGGGACTAATCTCCTCCGCGAGTCCCAGCGCTCCCTCTGGGGAGTGCGGTTGAGGGGCTGTCCTCGCACGGAGCCTCGCTCGGCCTCGGGGGAGCCACGAGAGGTGGGAGTTGGACCCGCAGCGGGCCAGGAGCCCTGTCATTGGAGGACCCGCCAAAAAGGAAGCAAACCCTCTTTTTCTTTATCCAACCCCAAATAGCTAGGGCCTAGGGGGAAGACTCACATATCGATAAATGGTTTGTTGCCCGTTTTATTCTCTGGGAAATACAACTGATCTTACCAAAGAAATAACCTGTCTCTTGCCGTGTTTACTTAGAGCCATAGAATACCTGTTTCAGAGCTGAAGGGGACCTGAGCCCATGATAATCCATTACCTCGTGAGAAAGCGGAAAAACTGACTTCAGCTTGCCCAGATGGCGCAGAGAATGGGTTTCCCGTAACCCCGCCTGTGTCTTTCCTTCAGCCTCGTCCCAAATGCCGTGGGAGGGAAGGCACTCTCTGTCAAGCTGCTGTCACCTTACCTGAAGTAAGGAGTCCACGCCTGCATGTCCGAGGAAAACAGTTTTCTCAAACACATTAGTTGAAAAACTGAAGACGCTGCCTAAAATACAAGCTGAGTTAGAGACAGCCCTTGTAAGACTAGGTAGGTATTTACAGGGCCTCTCCCACTAGCTTTGTTTTTCCAGAGTTTGTTCTTTATCCGGAAATTCTTAATTTGCCTACTGATCATTTAAAGAAAGGGTTCTATTAACATTGACACAGAAGAGACACTTTGTGGCACTTTTTAAAAATCTGAGTCTCGTGACTTGGTATAACTTCTGAAACTTACTGTTAATTTATAGCAGAGCTATTTGAGTAATATGCTCTTCTATGAGTATGAACAATAGAAGAAGTGTGATTTTTAAAGTGATTTGGACTACAAAATAAGAGCATGGAATATAGGCTTTAcagccagtacttgctgaggatgtactgtgtattaggtgtggtgcatataaaaaataaataaaatgtggtccctgtcttcaaagagcttaTGTTTTCTAGGAAAATGCTACATATTACTAGCTACTCCAAGGCAGAAAGTTGTTAGACACCAAATCAGAAAAAATAAAAATGTATTACCTTGGGGTGATGCAGGAACATTTTCCAAGGTTTCAGCTTTGCCTTAGTGTTTCTTAAACGGATCATAGATCTGAAGATAAGAATCAGAGTTCTATGGCAAAATACGAGTTATTTTACCAGTTATAAAGATGAAATTTGTCTTTCAACTTGATCATTTGCATAATTTTATACAATTGCTCTTTAGTTCTTTATATTTGTGCTTTTCAAACTGGTCTGTGGACCCCAGCCTACTGAAAACATTCTCTAGGATCATAAGAATTTATTTTAGGAGTCTGTTCATTATTCAGTTTTAAGAAACACTGTCTTAAAGGACTGGTAGGATTTGGATATGGGTAAAGGAAGGGGAAGCTGCTAGTGAAAAGATCTTCCCGACATTGAAAATGTGAAGAAAGGAAGTTAAGACAGCATTGCTGAGGGCTTCCTGAGGAACAGTGAAGTTCAGCTAGGTTGGAGCAACAGGTGCATGTAGAATAGTACAAGATCTAGAAACACAGGTGAGATCTAGACAGTAGAGGGCCTTTATTCCAATCTATGGAGGTTTTTTTTCCCCTATAAATTGGAGATTTATTTTTCAATTGCGTTGCTAAGTAGAAGCAATGTTTGAAAGAAATCAAACTAGACTACTGAAGATTAACATGCGTTCACAATGACCTTACCTATTATTACAGTTATTCGAAATCATTTTTCAGTGGAGCCATtgtcacaggatccttggagtgtcacttttccagctggaaaaatggcacctctgcccgaattttggtcgggctcattctgcccaccagtcccagcaggctgcactctgctcatactacggcctggatcccacacctgccaagtgcaagccaggtgcggagcagcgaggggtgtgtgagcgagcaagcatggggtccggccactgtatacagcccggcatgccagctgcaggagggcgggcagctctaggggctggccccttgcaaggctgtggctggtccaggtgtactgcaagcagcttccacagctggcaccagggaatgcagtggcacctggaagcttggagatgccaggagctgcagagccccaaagaggttgtcacagggagctcctaggtctaggcttcctaaagggccacagctcttctctcctctcttcccccttctctttcctttcttcttctcttcttctctcttctcttgttgtgttgcccacaacatggcaagcaaggggcatatttcagcccgtttgtgttacagctctttcagccatgccatttggcaggtcccgagttattgtcccacatccaggaagaat</dnaseq>|
 
sequence = <dnaseq>GTCAGGCCCTATCCTTTCATTAGCATATTTAAACAGCTCAGGGGCGGGGGAAGCTTGTAGGCCGGCTCCGGGGACAGTTATTGAGCACGCGCAGAGGCGGGGCGTCGGGTGCGCGCGAGCGGGCGGGCGGGCCGACCCGGAGGCGGGCTTCGGGAAGGGGCGGGGCCGGACTGCGGAAGGACCGCGAGGTgggggcgggggccgcgtccgcgcgcgcggggcggccgcggcggTGAGCCTGCGCGTCAGGGCCGCCGGCCTCTCCTTGGCTGTTGGAGGTGATAGGGGTCGAGGGGAGGGAAAAAGGGGCTGGCGTCAGCCGCCCCTGTGAGGTGGCCGTAGCGTGGACGAGTAAGAAGGGTTGAGTAAAGTGGACAAACACCTGGTTAGGAGAAGAGGGCAGGCCCGCAGCCGCCCTCCGGAGGAGGACTCGGGGCCTCGCGGGCGCCGGAGGAGGTTCCTGGGCCTCGGAgggccgccccggcgcgccgccccggcgcgagcgggcgcgggcgggggAGGGGAAGTGAGAGGTTGTTTATGACCGGGGACTAATCTCCTCCGCGAGTCCCAGCGCTCCCTCTGGGGAGTGCGGTTGAGGGGCTGTCCTCGCACGGAGCCTCGCTCGGCCTCGGGGGAGCCACGAGAGGTGGGAGTTGGACCCGCAGCGGGCCAGGAGCCCTGTCATTGGAGGACCCGCCAAAAAGGAAGCAAACCCTCTTTTTCTTTATCCAACCCCAAATAGCTAGGGCCTAGGGGGAAGACTCACATATCGATAAATGGTTTGTTGCCCGTTTTATTCTCTGGGAAATACAACTGATCTTACCAAAGAAATAACCTGTCTCTTGCCGTGTTTACTTAGAGCCATAGAATACCTGTTTCAGAGCTGAAGGGGACCTGAGCCCATGATAATCCATTACCTCGTGAGAAAGCGGAAAAACTGACTTCAGCTTGCCCAGATGGCGCAGAGAATGGGTTTCCCGTAACCCCGCCTGTGTCTTTCCTTCAGCCTCGTCCCAAATGCCGTGGGAGGGAAGGCACTCTCTGTCAAGCTGCTGTCACCTTACCTGAAGTAAGGAGTCCACGCCTGCATGTCCGAGGAAAACAGTTTTCTCAAACACATTAGTTGAAAAACTGAAGACGCTGCCTAAAATACAAGCTGAGTTAGAGACAGCCCTTGTAAGACTAGGTAGGTATTTACAGGGCCTCTCCCACTAGCTTTGTTTTTCCAGAGTTTGTTCTTTATCCGGAAATTCTTAATTTGCCTACTGATCATTTAAAGAAAGGGTTCTATTAACATTGACACAGAAGAGACACTTTGTGGCACTTTTTAAAAATCTGAGTCTCGTGACTTGGTATAACTTCTGAAACTTACTGTTAATTTATAGCAGAGCTATTTGAGTAATATGCTCTTCTATGAGTATGAACAATAGAAGAAGTGTGATTTTTAAAGTGATTTGGACTACAAAATAAGAGCATGGAATATAGGCTTTAcagccagtacttgctgaggatgtactgtgtattaggtgtggtgcatataaaaaataaataaaatgtggtccctgtcttcaaagagcttaTGTTTTCTAGGAAAATGCTACATATTACTAGCTACTCCAAGGCAGAAAGTTGTTAGACACCAAATCAGAAAAAATAAAAATGTATTACCTTGGGGTGATGCAGGAACATTTTCCAAGGTTTCAGCTTTGCCTTAGTGTTTCTTAAACGGATCATAGATCTGAAGATAAGAATCAGAGTTCTATGGCAAAATACGAGTTATTTTACCAGTTATAAAGATGAAATTTGTCTTTCAACTTGATCATTTGCATAATTTTATACAATTGCTCTTTAGTTCTTTATATTTGTGCTTTTCAAACTGGTCTGTGGACCCCAGCCTACTGAAAACATTCTCTAGGATCATAAGAATTTATTTTAGGAGTCTGTTCATTATTCAGTTTTAAGAAACACTGTCTTAAAGGACTGGTAGGATTTGGATATGGGTAAAGGAAGGGGAAGCTGCTAGTGAAAAGATCTTCCCGACATTGAAAATGTGAAGAAAGGAAGTTAAGACAGCATTGCTGAGGGCTTCCTGAGGAACAGTGAAGTTCAGCTAGGTTGGAGCAACAGGTGCATGTAGAATAGTACAAGATCTAGAAACACAGGTGAGATCTAGACAGTAGAGGGCCTTTATTCCAATCTATGGAGGTTTTTTTTCCCCTATAAATTGGAGATTTATTTTTCAATTGCGTTGCTAAGTAGAAGCAATGTTTGAAAGAAATCAAACTAGACTACTGAAGATTAACATGCGTTCACAATGACCTTACCTATTATTACAGTTATTCGAAATCATTTTTCAGTGGAGCCATtgtcacaggatccttggagtgtcacttttccagctggaaaaatggcacctctgcccgaattttggtcgggctcattctgcccaccagtcccagcaggctgcactctgctcatactacggcctggatcccacacctgccaagtgcaagccaggtgcggagcagcgaggggtgtgtgagcgagcaagcatggggtccggccactgtatacagcccggcatgccagctgcaggagggcgggcagctctaggggctggccccttgcaaggctgtggctggtccaggtgtactgcaagcagcttccacagctggcaccagggaatgcagtggcacctggaagcttggagatgccaggagctgcagagccccaaagaggttgtcacagggagctcctaggtctaggcttcctaaagggccacagctcttctctcctctcttcccccttctctttcctttcttcttctcttcttctctcttctcttgttgtgttgcccacaacatggcaagcaaggggcatatttcagcccgtttgtgttacagctctttcagccatgccatttggcaggtcccgagttattgtcccacatccaggaagaat</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG013555]]
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[[Category:Intergenic]][[Category:NONHSAG013555]][[Category:Transcripts]]

Latest revision as of 21:24, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT033912

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2964 nt

Genomic location

chr13+:52027277..52030240

Exon number

1

Exons

52027277..52030240

Genome context

Sequence
000001 GTCAGGCCCT ATCCTTTCAT TAGCATATTT AAACAGCTCA GGGGCGGGGG AAGCTTGTAG GCCGGCTCCG GGGACAGTTA 000080
000081 TTGAGCACGC GCAGAGGCGG GGCGTCGGGT GCGCGCGAGC GGGCGGGCGG GCCGACCCGG AGGCGGGCTT CGGGAAGGGG 000160
000161 CGGGGCCGGA CTGCGGAAGG ACCGCGAGGT gggggcgggg gccgcgtccg cgcgcgcggg gcggccgcgg cggTGAGCCT 000240
000241 GCGCGTCAGG GCCGCCGGCC TCTCCTTGGC TGTTGGAGGT GATAGGGGTC GAGGGGAGGG AAAAAGGGGC TGGCGTCAGC 000320
000321 CGCCCCTGTG AGGTGGCCGT AGCGTGGACG AGTAAGAAGG GTTGAGTAAA GTGGACAAAC ACCTGGTTAG GAGAAGAGGG 000400
000401 CAGGCCCGCA GCCGCCCTCC GGAGGAGGAC TCGGGGCCTC GCGGGCGCCG GAGGAGGTTC CTGGGCCTCG GAgggccgcc 000480
000481 ccggcgcgcc gccccggcgc gagcgggcgc gggcgggggA GGGGAAGTGA GAGGTTGTTT ATGACCGGGG ACTAATCTCC 000560
000561 TCCGCGAGTC CCAGCGCTCC CTCTGGGGAG TGCGGTTGAG GGGCTGTCCT CGCACGGAGC CTCGCTCGGC CTCGGGGGAG 000640
000641 CCACGAGAGG TGGGAGTTGG ACCCGCAGCG GGCCAGGAGC CCTGTCATTG GAGGACCCGC CAAAAAGGAA GCAAACCCTC 000720
000721 TTTTTCTTTA TCCAACCCCA AATAGCTAGG GCCTAGGGGG AAGACTCACA TATCGATAAA TGGTTTGTTG CCCGTTTTAT 000800
000801 TCTCTGGGAA ATACAACTGA TCTTACCAAA GAAATAACCT GTCTCTTGCC GTGTTTACTT AGAGCCATAG AATACCTGTT 000880
000881 TCAGAGCTGA AGGGGACCTG AGCCCATGAT AATCCATTAC CTCGTGAGAA AGCGGAAAAA CTGACTTCAG CTTGCCCAGA 000960
000961 TGGCGCAGAG AATGGGTTTC CCGTAACCCC GCCTGTGTCT TTCCTTCAGC CTCGTCCCAA ATGCCGTGGG AGGGAAGGCA 001040
001041 CTCTCTGTCA AGCTGCTGTC ACCTTACCTG AAGTAAGGAG TCCACGCCTG CATGTCCGAG GAAAACAGTT TTCTCAAACA 001120
001121 CATTAGTTGA AAAACTGAAG ACGCTGCCTA AAATACAAGC TGAGTTAGAG ACAGCCCTTG TAAGACTAGG TAGGTATTTA 001200
001201 CAGGGCCTCT CCCACTAGCT TTGTTTTTCC AGAGTTTGTT CTTTATCCGG AAATTCTTAA TTTGCCTACT GATCATTTAA 001280
001281 AGAAAGGGTT CTATTAACAT TGACACAGAA GAGACACTTT GTGGCACTTT TTAAAAATCT GAGTCTCGTG ACTTGGTATA 001360
001361 ACTTCTGAAA CTTACTGTTA ATTTATAGCA GAGCTATTTG AGTAATATGC TCTTCTATGA GTATGAACAA TAGAAGAAGT 001440
001441 GTGATTTTTA AAGTGATTTG GACTACAAAA TAAGAGCATG GAATATAGGC TTTAcagcca gtacttgctg aggatgtact 001520
001521 gtgtattagg tgtggtgcat ataaaaaata aataaaatgt ggtccctgtc ttcaaagagc ttaTGTTTTC TAGGAAAATG 001600
001601 CTACATATTA CTAGCTACTC CAAGGCAGAA AGTTGTTAGA CACCAAATCA GAAAAAATAA AAATGTATTA CCTTGGGGTG 001680
001681 ATGCAGGAAC ATTTTCCAAG GTTTCAGCTT TGCCTTAGTG TTTCTTAAAC GGATCATAGA TCTGAAGATA AGAATCAGAG 001760
001761 TTCTATGGCA AAATACGAGT TATTTTACCA GTTATAAAGA TGAAATTTGT CTTTCAACTT GATCATTTGC ATAATTTTAT 001840
001841 ACAATTGCTC TTTAGTTCTT TATATTTGTG CTTTTCAAAC TGGTCTGTGG ACCCCAGCCT ACTGAAAACA TTCTCTAGGA 001920
001921 TCATAAGAAT TTATTTTAGG AGTCTGTTCA TTATTCAGTT TTAAGAAACA CTGTCTTAAA GGACTGGTAG GATTTGGATA 002000
002001 TGGGTAAAGG AAGGGGAAGC TGCTAGTGAA AAGATCTTCC CGACATTGAA AATGTGAAGA AAGGAAGTTA AGACAGCATT 002080
002081 GCTGAGGGCT TCCTGAGGAA CAGTGAAGTT CAGCTAGGTT GGAGCAACAG GTGCATGTAG AATAGTACAA GATCTAGAAA 002160
002161 CACAGGTGAG ATCTAGACAG TAGAGGGCCT TTATTCCAAT CTATGGAGGT TTTTTTTCCC CTATAAATTG GAGATTTATT 002240
002241 TTTCAATTGC GTTGCTAAGT AGAAGCAATG TTTGAAAGAA ATCAAACTAG ACTACTGAAG ATTAACATGC GTTCACAATG 002320
002321 ACCTTACCTA TTATTACAGT TATTCGAAAT CATTTTTCAG TGGAGCCATt gtcacaggat ccttggagtg tcacttttcc 002400
002401 agctggaaaa atggcacctc tgcccgaatt ttggtcgggc tcattctgcc caccagtccc agcaggctgc actctgctca 002480
002481 tactacggcc tggatcccac acctgccaag tgcaagccag gtgcggagca gcgaggggtg tgtgagcgag caagcatggg 002560
002561 gtccggccac tgtatacagc ccggcatgcc agctgcagga gggcgggcag ctctaggggc tggccccttg caaggctgtg 002640
002641 gctggtccag gtgtactgca agcagcttcc acagctggca ccagggaatg cagtggcacc tggaagcttg gagatgccag 002720
002721 gagctgcaga gccccaaaga ggttgtcaca gggagctcct aggtctaggc ttcctaaagg gccacagctc ttctctcctc 002800
002801 tcttccccct tctctttcct ttcttcttct cttcttctct cttctcttgt tgtgttgccc acaacatggc aagcaagggg 002880
002881 catatttcag cccgtttgtg ttacagctct ttcagccatg ccatttggca ggtcccgagt tattgtccca catccaggaa 002960
002961 gaat
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Predicted Small Protein

Name NONHSAT033912_smProtein_2555:2761
Length 69
Molecular weight 7194.0387
Aromaticity 0.0735294117647
Instability index 65.2455882353
Isoelectric point 7.75067138672
Runs 9
Runs residual 0.00814785373609
Runs probability 0.0243969459656
Amino acid sequence MGSGHCIQPGMPAAGGRAALGAGPLQGCGWSRCTASSFHSWHQGMQWHLEAWRCQELQSP
KEVVTGSS
Secondary structure LLLLLLLLLLLLLLLLEEELLLLLLLLLLLLEEELLLLLHHHHHHHHHHHHHHHHHHLLL
LEEEELLL
PRMN -
PiMo -