Difference between revisions of "Lnc-FOXD4L6-1:3"

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sequence = <dnaseq>TCCTAATAGCCAGGGGGGGAAGAGGGGCTGGCTCTCAGTCCCTGCCTCGCGGGTGGTCCTTCACCCCGCTGCGATGGGGGTCCTAAGAGCAAGGGGGGGAAGTGGGGCTGGCTCTCTGTCCCCGCCTCGCCGGGGGTGCCTCGCACCCTTGCGATGGGGGTCCTAAGAGCCAGTAGGGGAAGAGGAGCTGGCTCTCAGTCACCACAGCATGGGGGGCCTTTCTGTTCTGGTTTTGCCCAAGAGTAAGCTTATTTGCATCTGGTTCTAGCAAGGGAATTGCTGCGAAGGCCCTCAAACAGGGGGGCCATCCTTTCGAATCCCTATCTAGTTGTTTAGAGATGTAGGCCACCGGCCTCAGCCAAGGCCCCACAGTTTGGGTTAAAAGTCCAGCTGCCATCTTTTCTCTCTGACGCATACAATGGAAAAGGCTTTGTGAGATCGGGTAGCCCCTCGGCTGGGGCTTTCAGAAGTTTTTCCTTTAAGTCATGAAAGACTTGCTGTTGTTGGAATCCCCATTCCAAAAGTTCCCGGTCCCCGCCCCCATTGTGACCTCATACAAAGGCTTGGCTAATACTGCAAAGTTTGGGATTCCCAGTCTACAAAACCCCACAGCTCCTAGGAATTCTCTCACCACCCTTGTGCCTTTAGGCTTCGGTAGATTGCAAATGACCTGCTTTCTTTCGGATCCCGGGCTGCTTTCGGACACCTGTCGAATAGTAAATCCCAAGTAAGGTACCTGCGGTCGTCGGCAGATCTGAATTTTCTTCTTGGACACCTAATACCCACAGTCCTCCAGAGACCGAGAGGTTGATGTCACTCCCAATATCGGAGGAAGTATACACCCCCGTGTGAGATGGTCCTTAATAATATTCCACGGCGGAGGGGGTGATATGACTACATACATGGCAGAAAGTGGAAACCTCCCAGGGATATTGTTCCCACGATCCTGGAGGGAAGAAGATGATGTTACTTTCAATATGACAGAAGGTGGATGAAGTGGTGGACTGCCCCTCCACACCTGTGGACACGCCCCCACTGATATTCCTTCTAATTGCAGCGTGGGAGAGGAGGATATGACACGCGATATCGCAGGGAGTAGAAACACCCCTGTGATACTGTTCTTAATATTCAGGGAGGAAGAGGATGATATTACTCCCAATACAGACGGGTGTACACCCTCTGTACACCGAGGGTGTACACCTGTCTGTGAAAGAGTTCGTAATCTCCAGAGGGGGAGATGATATTACTCACAATATGGTAAAGAGGCTGTGAGTCCACGGAGGATCCTCAGAGCCAGCGGGGGAAGAGGGGCTGGCTCTCAGTCCCCGCCTCGCGGGGGTGACTCCCCCCAGTGCGATGGGGGTCCTAAGAGCCAGTGGGGGAAGAGGGGCTGGCTCTGAGACCCCGCCTCGCGGGGGGTGCCTCCCCGCCCTGTGATGGGGGTCCGAAGAGCCAGAAGGCTTAGAGGGGCTGGCTCTCAGTCCCCGCCTCGCGGGGGGTGCCTCCTCCCCCTGCGATGGGGGTCGTAAGAGCCACTGGGGGAATAGGGGCTTGCTCTCAGTCACCGCCTCGCGGGGGGTGCCTCCTTTCCTTTCTACATAGACACAGTGACAGTCTGATCTCTCTTTCTTTTCCCTACAGATGGACACGCCCCCACTGATATTGTTTTTAATGCAGCGTGGGAGGGGAGGATATGACACGCGATATCGCAGGTAGTAGAAACACCCCTTTGATAGTGTTCTTAATATTCAGGGAGGAAGAAGATGATGTTACTCCCAATACAGACGGATGTACACCCTCTGTACACCGAGGGTGTACACCCGTCTGTGAAGGAGTTCGTAATCTCCAGAGGTGGAGATGATATTACTCACAATATGGTAAACAGGCTGTGAGTCCATCGCGGATCCTCAGAGCCAGGTGGGGAAGAGGGGCTGGCTGTCAGTCCCCTCCTCGCGGGGGGTGCCTCCCCCACTGCTATGGGGATCCCAAGAGCCAGTGGGGGAAGAGGTGCTGGCTCTCAGTCTCCGCCTCGCGAGGTGCCTCCCCACCCTGCGATCGGGGTCCGAAGAGCCAGGGGGGAAGAGGGGCTGGCTCTCTTCGTGGATGATTCTTTTTCCATTCTCAGGCAGTTTTCTTTTTTCTTTCTTTCTTTTTTTTTTTTTTTGAGACTGAGTCTTGCTCTGTTGCCCATGCTTTGCTCGATCTCGGGTGACTGCAACCACTGCCTCCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAGAGGCGTGTGTCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTTGCCAGGATGGTCTCTATCTCCTGCCCTTGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTGCAGGTGCGAGCCACCGGGTCCAGCCTCTCAGGCGATTTTCATACCTGCATACTCTGGTCACTACTCTGTTAAACAGTCAAGGAGGCTGAGTGCCACGTGCTGACGTCACTAAGATCAATACAGCAAACTCTGAAAGATGGACAGAGAGACAGGAGATGGTCCTTTATAATGCAGTGTGATCTGTGCTGCAATAGAGTTTTGGAAGCTAGAAGTTCAAAACGAGGTGTTGGCAGCACCATGCTCTCTCTGAAGATGCTAGGAAGAATCTGCTCCATGCCTTTCCATTCGCTTCTGGGGTTTCCTGCAAGCCCTGACATTCCTTGGCTTGTAGATGCATCACCCCAGTTTCCGCCCCCATCATCACATGGCCTCCTCTCTGTGTGTGCCTCTGCGTTCCCTCTATTCTTCTTCTAAGGACACCGACACCAGTCATAGTGGATTAAGTGTCCACTCCTAACCAATTACATCTGCAACAACC</dnaseq>|
 
sequence = <dnaseq>TCCTAATAGCCAGGGGGGGAAGAGGGGCTGGCTCTCAGTCCCTGCCTCGCGGGTGGTCCTTCACCCCGCTGCGATGGGGGTCCTAAGAGCAAGGGGGGGAAGTGGGGCTGGCTCTCTGTCCCCGCCTCGCCGGGGGTGCCTCGCACCCTTGCGATGGGGGTCCTAAGAGCCAGTAGGGGAAGAGGAGCTGGCTCTCAGTCACCACAGCATGGGGGGCCTTTCTGTTCTGGTTTTGCCCAAGAGTAAGCTTATTTGCATCTGGTTCTAGCAAGGGAATTGCTGCGAAGGCCCTCAAACAGGGGGGCCATCCTTTCGAATCCCTATCTAGTTGTTTAGAGATGTAGGCCACCGGCCTCAGCCAAGGCCCCACAGTTTGGGTTAAAAGTCCAGCTGCCATCTTTTCTCTCTGACGCATACAATGGAAAAGGCTTTGTGAGATCGGGTAGCCCCTCGGCTGGGGCTTTCAGAAGTTTTTCCTTTAAGTCATGAAAGACTTGCTGTTGTTGGAATCCCCATTCCAAAAGTTCCCGGTCCCCGCCCCCATTGTGACCTCATACAAAGGCTTGGCTAATACTGCAAAGTTTGGGATTCCCAGTCTACAAAACCCCACAGCTCCTAGGAATTCTCTCACCACCCTTGTGCCTTTAGGCTTCGGTAGATTGCAAATGACCTGCTTTCTTTCGGATCCCGGGCTGCTTTCGGACACCTGTCGAATAGTAAATCCCAAGTAAGGTACCTGCGGTCGTCGGCAGATCTGAATTTTCTTCTTGGACACCTAATACCCACAGTCCTCCAGAGACCGAGAGGTTGATGTCACTCCCAATATCGGAGGAAGTATACACCCCCGTGTGAGATGGTCCTTAATAATATTCCACGGCGGAGGGGGTGATATGACTACATACATGGCAGAAAGTGGAAACCTCCCAGGGATATTGTTCCCACGATCCTGGAGGGAAGAAGATGATGTTACTTTCAATATGACAGAAGGTGGATGAAGTGGTGGACTGCCCCTCCACACCTGTGGACACGCCCCCACTGATATTCCTTCTAATTGCAGCGTGGGAGAGGAGGATATGACACGCGATATCGCAGGGAGTAGAAACACCCCTGTGATACTGTTCTTAATATTCAGGGAGGAAGAGGATGATATTACTCCCAATACAGACGGGTGTACACCCTCTGTACACCGAGGGTGTACACCTGTCTGTGAAAGAGTTCGTAATCTCCAGAGGGGGAGATGATATTACTCACAATATGGTAAAGAGGCTGTGAGTCCACGGAGGATCCTCAGAGCCAGCGGGGGAAGAGGGGCTGGCTCTCAGTCCCCGCCTCGCGGGGGTGACTCCCCCCAGTGCGATGGGGGTCCTAAGAGCCAGTGGGGGAAGAGGGGCTGGCTCTGAGACCCCGCCTCGCGGGGGGTGCCTCCCCGCCCTGTGATGGGGGTCCGAAGAGCCAGAAGGCTTAGAGGGGCTGGCTCTCAGTCCCCGCCTCGCGGGGGGTGCCTCCTCCCCCTGCGATGGGGGTCGTAAGAGCCACTGGGGGAATAGGGGCTTGCTCTCAGTCACCGCCTCGCGGGGGGTGCCTCCTTTCCTTTCTACATAGACACAGTGACAGTCTGATCTCTCTTTCTTTTCCCTACAGATGGACACGCCCCCACTGATATTGTTTTTAATGCAGCGTGGGAGGGGAGGATATGACACGCGATATCGCAGGTAGTAGAAACACCCCTTTGATAGTGTTCTTAATATTCAGGGAGGAAGAAGATGATGTTACTCCCAATACAGACGGATGTACACCCTCTGTACACCGAGGGTGTACACCCGTCTGTGAAGGAGTTCGTAATCTCCAGAGGTGGAGATGATATTACTCACAATATGGTAAACAGGCTGTGAGTCCATCGCGGATCCTCAGAGCCAGGTGGGGAAGAGGGGCTGGCTGTCAGTCCCCTCCTCGCGGGGGGTGCCTCCCCCACTGCTATGGGGATCCCAAGAGCCAGTGGGGGAAGAGGTGCTGGCTCTCAGTCTCCGCCTCGCGAGGTGCCTCCCCACCCTGCGATCGGGGTCCGAAGAGCCAGGGGGGAAGAGGGGCTGGCTCTCTTCGTGGATGATTCTTTTTCCATTCTCAGGCAGTTTTCTTTTTTCTTTCTTTCTTTTTTTTTTTTTTTGAGACTGAGTCTTGCTCTGTTGCCCATGCTTTGCTCGATCTCGGGTGACTGCAACCACTGCCTCCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAGAGGCGTGTGTCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTTGCCAGGATGGTCTCTATCTCCTGCCCTTGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTGCAGGTGCGAGCCACCGGGTCCAGCCTCTCAGGCGATTTTCATACCTGCATACTCTGGTCACTACTCTGTTAAACAGTCAAGGAGGCTGAGTGCCACGTGCTGACGTCACTAAGATCAATACAGCAAACTCTGAAAGATGGACAGAGAGACAGGAGATGGTCCTTTATAATGCAGTGTGATCTGTGCTGCAATAGAGTTTTGGAAGCTAGAAGTTCAAAACGAGGTGTTGGCAGCACCATGCTCTCTCTGAAGATGCTAGGAAGAATCTGCTCCATGCCTTTCCATTCGCTTCTGGGGTTTCCTGCAAGCCCTGACATTCCTTGGCTTGTAGATGCATCACCCCAGTTTCCGCCCCCATCATCACATGGCCTCCTCTCTGTGTGTGCCTCTGCGTTCCCTCTATTCTTCTTCTAAGGACACCGACACCAGTCATAGTGGATTAAGTGTCCACTCCTAACCAATTACATCTGCAACAACC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-FOXD4L6-1]][[Category:NONHSAG052461]]
+
[[Category:Intergenic]][[Category:lnc-FOXD4L6-1]][[Category:NONHSAG052461]][[Category:Transcripts]]

Latest revision as of 04:16, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-FOXD4L6-1:3

Source

LNCipedia2.1

Same with

NONHSAT131654

Classification

intergenic

Length

2888 nt

Genomic location

chr9-:69174242..69181618

Exon number

5

Exons

69174242..69174523,69175960..69176070,69176914..69178388,69179394..69179617,69180823..69181618

Genome context

Sequence
000001 TCCTAATAGC CAGGGGGGGA AGAGGGGCTG GCTCTCAGTC CCTGCCTCGC GGGTGGTCCT TCACCCCGCT GCGATGGGGG 000080
000081 TCCTAAGAGC AAGGGGGGGA AGTGGGGCTG GCTCTCTGTC CCCGCCTCGC CGGGGGTGCC TCGCACCCTT GCGATGGGGG 000160
000161 TCCTAAGAGC CAGTAGGGGA AGAGGAGCTG GCTCTCAGTC ACCACAGCAT GGGGGGCCTT TCTGTTCTGG TTTTGCCCAA 000240
000241 GAGTAAGCTT ATTTGCATCT GGTTCTAGCA AGGGAATTGC TGCGAAGGCC CTCAAACAGG GGGGCCATCC TTTCGAATCC 000320
000321 CTATCTAGTT GTTTAGAGAT GTAGGCCACC GGCCTCAGCC AAGGCCCCAC AGTTTGGGTT AAAAGTCCAG CTGCCATCTT 000400
000401 TTCTCTCTGA CGCATACAAT GGAAAAGGCT TTGTGAGATC GGGTAGCCCC TCGGCTGGGG CTTTCAGAAG TTTTTCCTTT 000480
000481 AAGTCATGAA AGACTTGCTG TTGTTGGAAT CCCCATTCCA AAAGTTCCCG GTCCCCGCCC CCATTGTGAC CTCATACAAA 000560
000561 GGCTTGGCTA ATACTGCAAA GTTTGGGATT CCCAGTCTAC AAAACCCCAC AGCTCCTAGG AATTCTCTCA CCACCCTTGT 000640
000641 GCCTTTAGGC TTCGGTAGAT TGCAAATGAC CTGCTTTCTT TCGGATCCCG GGCTGCTTTC GGACACCTGT CGAATAGTAA 000720
000721 ATCCCAAGTA AGGTACCTGC GGTCGTCGGC AGATCTGAAT TTTCTTCTTG GACACCTAAT ACCCACAGTC CTCCAGAGAC 000800
000801 CGAGAGGTTG ATGTCACTCC CAATATCGGA GGAAGTATAC ACCCCCGTGT GAGATGGTCC TTAATAATAT TCCACGGCGG 000880
000881 AGGGGGTGAT ATGACTACAT ACATGGCAGA AAGTGGAAAC CTCCCAGGGA TATTGTTCCC ACGATCCTGG AGGGAAGAAG 000960
000961 ATGATGTTAC TTTCAATATG ACAGAAGGTG GATGAAGTGG TGGACTGCCC CTCCACACCT GTGGACACGC CCCCACTGAT 001040
001041 ATTCCTTCTA ATTGCAGCGT GGGAGAGGAG GATATGACAC GCGATATCGC AGGGAGTAGA AACACCCCTG TGATACTGTT 001120
001121 CTTAATATTC AGGGAGGAAG AGGATGATAT TACTCCCAAT ACAGACGGGT GTACACCCTC TGTACACCGA GGGTGTACAC 001200
001201 CTGTCTGTGA AAGAGTTCGT AATCTCCAGA GGGGGAGATG ATATTACTCA CAATATGGTA AAGAGGCTGT GAGTCCACGG 001280
001281 AGGATCCTCA GAGCCAGCGG GGGAAGAGGG GCTGGCTCTC AGTCCCCGCC TCGCGGGGGT GACTCCCCCC AGTGCGATGG 001360
001361 GGGTCCTAAG AGCCAGTGGG GGAAGAGGGG CTGGCTCTGA GACCCCGCCT CGCGGGGGGT GCCTCCCCGC CCTGTGATGG 001440
001441 GGGTCCGAAG AGCCAGAAGG CTTAGAGGGG CTGGCTCTCA GTCCCCGCCT CGCGGGGGGT GCCTCCTCCC CCTGCGATGG 001520
001521 GGGTCGTAAG AGCCACTGGG GGAATAGGGG CTTGCTCTCA GTCACCGCCT CGCGGGGGGT GCCTCCTTTC CTTTCTACAT 001600
001601 AGACACAGTG ACAGTCTGAT CTCTCTTTCT TTTCCCTACA GATGGACACG CCCCCACTGA TATTGTTTTT AATGCAGCGT 001680
001681 GGGAGGGGAG GATATGACAC GCGATATCGC AGGTAGTAGA AACACCCCTT TGATAGTGTT CTTAATATTC AGGGAGGAAG 001760
001761 AAGATGATGT TACTCCCAAT ACAGACGGAT GTACACCCTC TGTACACCGA GGGTGTACAC CCGTCTGTGA AGGAGTTCGT 001840
001841 AATCTCCAGA GGTGGAGATG ATATTACTCA CAATATGGTA AACAGGCTGT GAGTCCATCG CGGATCCTCA GAGCCAGGTG 001920
001921 GGGAAGAGGG GCTGGCTGTC AGTCCCCTCC TCGCGGGGGG TGCCTCCCCC ACTGCTATGG GGATCCCAAG AGCCAGTGGG 002000
002001 GGAAGAGGTG CTGGCTCTCA GTCTCCGCCT CGCGAGGTGC CTCCCCACCC TGCGATCGGG GTCCGAAGAG CCAGGGGGGA 002080
002081 AGAGGGGCTG GCTCTCTTCG TGGATGATTC TTTTTCCATT CTCAGGCAGT TTTCTTTTTT CTTTCTTTCT TTTTTTTTTT 002160
002161 TTTTGAGACT GAGTCTTGCT CTGTTGCCCA TGCTTTGCTC GATCTCGGGT GACTGCAACC ACTGCCTCCC AGGTTCAAGA 002240
002241 GATTCTCCTG CCTCAGCCTC CTGAGTAGCT GGGACTAGAG GCGTGTGTCA CCACACCCAG CTAATTTTTG TATTTTTAGT 002320
002321 AGAGATGGGG TTTCACCATG TTTGCCAGGA TGGTCTCTAT CTCCTGCCCT TGTGATCCAC CCACCTCAGC CTCCCAAAGT 002400
002401 GCTGGGATTG CAGGTGCGAG CCACCGGGTC CAGCCTCTCA GGCGATTTTC ATACCTGCAT ACTCTGGTCA CTACTCTGTT 002480
002481 AAACAGTCAA GGAGGCTGAG TGCCACGTGC TGACGTCACT AAGATCAATA CAGCAAACTC TGAAAGATGG ACAGAGAGAC 002560
002561 AGGAGATGGT CCTTTATAAT GCAGTGTGAT CTGTGCTGCA ATAGAGTTTT GGAAGCTAGA AGTTCAAAAC GAGGTGTTGG 002640
002641 CAGCACCATG CTCTCTCTGA AGATGCTAGG AAGAATCTGC TCCATGCCTT TCCATTCGCT TCTGGGGTTT CCTGCAAGCC 002720
002721 CTGACATTCC TTGGCTTGTA GATGCATCAC CCCAGTTTCC GCCCCCATCA TCACATGGCC TCCTCTCTGT GTGTGCCTCT 002800
002801 GCGTTCCCTC TATTCTTCTT CTAAGGACAC CGACACCAGT CATAGTGGAT TAAGTGTCCA CTCCTAACCA ATTACATCTG 002880
002881 CAACAACC
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