Difference between revisions of "NONHSAT034089"
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sequence = <dnaseq>agcgtgtctggatgaaggcaacaatagcaggagttgagctgggagagaaaaataggggctacatcacataggtcaggaagaggagcttggatttgatcccatatgcacgggaagccgcttgatgctggAGGTGAAGATGGGCAGAAAAATGAACCATCAAAAAAGAAGAAGGAGGATCAATGCATGACTCATGAATCAGTCTTGCTTTACTGAAAAGTTTCAGAAAACTCAAGATTTTCTTCATGCACTCAATTTGTGGTAATACAACCTCAAGCAAATCGTATATTTATCTGATATGTGCATGCTGGAAACTTTCCGTCTCATACTTTCCAGAATCTCAGGACTCACCCAGCACAAGAGGGGGCTGGAATTTGGAAAACATAAGATTGATTTTAAACCTAAAGACTCAGTGAAGATTTCTGTATCTGAATCTCTCTGCCTACCTATTAAATGTTGTTCCCAGGGAGATCAGCTCCAACTGGAACCAGAGTGAAGCTTCTATTCCCCTATCCATGGACAACACCTTCACCCACCTAGGCATCTAGACATCTAGACACAGACCTATGTCCCACCTAGAGATCTAGGCACTGAGACATCTAGATACCTAGATATgtctagacatcttcccagcaaaaaatcccaatccaactcgctcctggtcattcctacttggatgtctcacagacacttcaaaatcaatgttgtaaacgaaattaatcctctatctcctgaccctcaatggccctccctcatcatttgtgtcttgcagaatgaccccaccattcaccagtttttccagctgaaacccaggagGCCACAACAGGATTTGAGCGGCCTATAGAGATCCAAATGCTACTGACAGCAGCACTGAGGGCCCACTCAA</dnaseq>| | sequence = <dnaseq>agcgtgtctggatgaaggcaacaatagcaggagttgagctgggagagaaaaataggggctacatcacataggtcaggaagaggagcttggatttgatcccatatgcacgggaagccgcttgatgctggAGGTGAAGATGGGCAGAAAAATGAACCATCAAAAAAGAAGAAGGAGGATCAATGCATGACTCATGAATCAGTCTTGCTTTACTGAAAAGTTTCAGAAAACTCAAGATTTTCTTCATGCACTCAATTTGTGGTAATACAACCTCAAGCAAATCGTATATTTATCTGATATGTGCATGCTGGAAACTTTCCGTCTCATACTTTCCAGAATCTCAGGACTCACCCAGCACAAGAGGGGGCTGGAATTTGGAAAACATAAGATTGATTTTAAACCTAAAGACTCAGTGAAGATTTCTGTATCTGAATCTCTCTGCCTACCTATTAAATGTTGTTCCCAGGGAGATCAGCTCCAACTGGAACCAGAGTGAAGCTTCTATTCCCCTATCCATGGACAACACCTTCACCCACCTAGGCATCTAGACATCTAGACACAGACCTATGTCCCACCTAGAGATCTAGGCACTGAGACATCTAGATACCTAGATATgtctagacatcttcccagcaaaaaatcccaatccaactcgctcctggtcattcctacttggatgtctcacagacacttcaaaatcaatgttgtaaacgaaattaatcctctatctcctgaccctcaatggccctccctcatcatttgtgtcttgcagaatgaccccaccattcaccagtttttccagctgaaacccaggagGCCACAACAGGATTTGAGCGGCCTATAGAGATCCAAATGCTACTGACAGCAGCACTGAGGGCCCACTCAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG013639]] | + | [[Category:Intergenic]][[Category:NONHSAG013639]][[Category:Transcripts]] |
Revision as of 10:31, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034089 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
883 nt |
Genomic location |
chr13-:60203616..60207719 |
Exon number |
2 |
Exons |
60203616..60204370,60207592..60207719 |
Genome context |
|
Sequence |
000001 agcgtgtctg gatgaaggca acaatagcag gagttgagct gggagagaaa aataggggct acatcacata ggtcaggaag 000080
000081 aggagcttgg atttgatccc atatgcacgg gaagccgctt gatgctggAG GTGAAGATGG GCAGAAAAAT GAACCATCAA 000160 000161 AAAAGAAGAA GGAGGATCAA TGCATGACTC ATGAATCAGT CTTGCTTTAC TGAAAAGTTT CAGAAAACTC AAGATTTTCT 000240 000241 TCATGCACTC AATTTGTGGT AATACAACCT CAAGCAAATC GTATATTTAT CTGATATGTG CATGCTGGAA ACTTTCCGTC 000320 000321 TCATACTTTC CAGAATCTCA GGACTCACCC AGCACAAGAG GGGGCTGGAA TTTGGAAAAC ATAAGATTGA TTTTAAACCT 000400 000401 AAAGACTCAG TGAAGATTTC TGTATCTGAA TCTCTCTGCC TACCTATTAA ATGTTGTTCC CAGGGAGATC AGCTCCAACT 000480 000481 GGAACCAGAG TGAAGCTTCT ATTCCCCTAT CCATGGACAA CACCTTCACC CACCTAGGCA TCTAGACATC TAGACACAGA 000560 000561 CCTATGTCCC ACCTAGAGAT CTAGGCACTG AGACATCTAG ATACCTAGAT ATgtctagac atcttcccag caaaaaatcc 000640 000641 caatccaact cgctcctggt cattcctact tggatgtctc acagacactt caaaatcaat gttgtaaacg aaattaatcc 000720 000721 tctatctcct gaccctcaat ggccctccct catcatttgt gtcttgcaga atgaccccac cattcaccag tttttccagc 000800 000801 tgaaacccag gagGCCACAA CAGGATTTGA GCGGCCTATA GAGATCCAAA TGCTACTGAC AGCAGCACTG AGGGCCCACT 000880 000881 CAA |
Predicted Small Protein
Name | NONHSAT034089_smProtein_242:412 |
Length | 57 |
Molecular weight | 6356.2031 |
Aromaticity | 0.107142857143 |
Instability index | 76.1196428571 |
Isoelectric point | 8.57037353516 |
Runs | 9 |
Runs residual | 0.00741608118657 |
Runs probability | 0.0429841606312 |
Amino acid sequence | MHSICGNTTSSKSYIYLICACWKLSVSYFPESQDSPSTRGGWNLENIRLILNLKTQ |
Secondary structure | LLLLLLLLLLLHHHEEEEHHHHLLLEEEELLLLLLLLLLLLLLHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |