Difference between revisions of "Lnc-EXOC2-5:4"

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sequence = <dnaseq>CTTGATTGCTGGGCCCTGGTTGAACTCCTTATTAGTAACACCCAGGTTAGTCCTACTTAATTCTTACCTGCAGCCAAAGTGGACTTAGCATCTCCTTGCATGCCTGGTAAAGTCAAGGGTTTTCAGCCAGGGCCTGTGTATAAAGCAGAAGCAGCACAGAGTCTGGTTTGAAGCTTAGTGCTTGGGTTCAGACAGTTGTGGGTTACAATCCCTTCTACACATGTTCTCTGTGGAAACCATTTGGTTCTCTGTGCTTGGAACTCGCCTGCAACGGGACAAAGCCATCTCACCTAGACTGTTGTTATGAAGATTGAATTAGGTGATTCTGAGAGGCATTTATGCGTCCTCCCTGAGTAACAATCCATGAAAAGTGGGCGTCATTGCTGAAGCTCAAGGAAGAAATATGAAATTTGATTATATCCTTATTCACGGCATTGGGTCACCAACTCAGCACTTTTTATGAAAGTAGCATCTGACCTGGCAAAGGCTGTGTCATCTTATTACCTCAGAAAGACAAATTTACGGGGTCAGACGATGGATGGCTTGTAGATTTCTCAATGGGCTGGAAGGAAGGAGAGAAAAAGAGAGACAGGAGAGAGTACACATTTAATTCTGCTTCCCCTAGGGTGATATTTCCTTCCTCCCCTTCCAGGGTTCTCAAAAAGGCATTCTAGGAAGTCCTGTAAAATACATGCTCATAAAAATCTCATAATTTCCACAAATTGTTGAGAATTTAAAACTCGGTTGGGAGTTTGCTGTTTCAGCCTGAGACACCGGGGTCACGTTTCAGTGCCTGCAGTCTTGAGACAGTACCAGGCATCTGGGATGAAGCTGAGGAAAGAAGATGTGGGGGCCCTGCTGGCCTGCTCCTTCTCTCGAAAGACGCTTACCGGCTGCTGGTGTGTCACAGGGCTTTAGGATTTGGAAAAACAGAGGGATTTAAAAGAAGATAGAATGGTCAGAATTTCGAGAACTGTGTGCTGAAGTGCCATCTTTAGGGTGCTCATAACACGGCCTTACAACATTAGAGGTGCTGGAATCATGGAAGAGGCATCTGGACTCTGTAATGTCCTTCCCCCTGGAAAATCTGCTCCAGAAGTGGGGGATTGGGAGCTGTCAACATATGAGCCATCTTTTGCTCCGTTCAAGATGGTAGGGGCATTCTCAACATGCCCCTCACTCTGATTCTGCCTCACTTTTATTTTAGAATTTTCCACTGCCTTTTCTGGAATGTGCTTTTTCAACCCTCAAAATCTGTAGAGAAGAAATAAGCAGAAACCGAAATGGCTTTCTGGTGTTCTCCATGCTCTCAGCTTACTGGAAAATCGAGCCGCAGGCTCGAGGCTGGACTTTAAGGCAGAGCACTGCAATTATAGTGCTATGGCCTTGGCTTCCTTTCTCATCACCCAGGTACAGTCCTGCAGTCCTCAGAGGATGCCAGTCCCACACAGGGGGATCCTTCTCCATAGGAAAACCGAGGAACAATGCAGGTTCGAGGTGCACAGTGGCTAAGCACACTCAGTCCTCAAGATCTTTCCTCTCAAATGCTAATGCTACCTTCAGATGGGCTGCTGCCTGCTACCATTTCAACATTGAGTCCTTTAAGATGCCATCAGAGAGAGGGGAAGCAAGAGGCCAAGAAAAATGAAAGGCCCTGCATGTTTTTCTTCGGGAAGGCTGTGCAGTCTGCTCTGAGGAGACAGATCAACCTAGCCCTTCTCCAGGACGAACTCCGAAAACCACAGGAATTCACGTTCAAAGGATGACGCATCTCAGAATCAGGTGGCCTTTAGTGAGCCAGTGGCTCGGATTTATGTGGTCAGATTCTGAGCCGGCAGACACAAGGACAAGCCAGCGAGAGGTGTGGCAGGACTGGAGATTCTGTGTAGTGAATTTTAGGAAAATGACTCGATAACTGCAACGGTGATGTCATGTGTGTGTCTACTTTAGAGAGCAGATGGTCGATCTGGTGCTAATTTGCCCAATACGGTAGCTACGCGGCAATGAAATTCCAAAACTGGCACAAGGCGGGCCTGGTTCCAGGGATCACTGGATCTAAAAGAAAAAATCCAATGAATGATGCATCCCACTGGCATTCCAAAGAGCAAGTAAACAAAAGAAATTATGGGTTTGGGCTCAGAAACCCCAACCCTTGAGATTTCAGAAAACAAAACGAC</dnaseq>|
 
sequence = <dnaseq>CTTGATTGCTGGGCCCTGGTTGAACTCCTTATTAGTAACACCCAGGTTAGTCCTACTTAATTCTTACCTGCAGCCAAAGTGGACTTAGCATCTCCTTGCATGCCTGGTAAAGTCAAGGGTTTTCAGCCAGGGCCTGTGTATAAAGCAGAAGCAGCACAGAGTCTGGTTTGAAGCTTAGTGCTTGGGTTCAGACAGTTGTGGGTTACAATCCCTTCTACACATGTTCTCTGTGGAAACCATTTGGTTCTCTGTGCTTGGAACTCGCCTGCAACGGGACAAAGCCATCTCACCTAGACTGTTGTTATGAAGATTGAATTAGGTGATTCTGAGAGGCATTTATGCGTCCTCCCTGAGTAACAATCCATGAAAAGTGGGCGTCATTGCTGAAGCTCAAGGAAGAAATATGAAATTTGATTATATCCTTATTCACGGCATTGGGTCACCAACTCAGCACTTTTTATGAAAGTAGCATCTGACCTGGCAAAGGCTGTGTCATCTTATTACCTCAGAAAGACAAATTTACGGGGTCAGACGATGGATGGCTTGTAGATTTCTCAATGGGCTGGAAGGAAGGAGAGAAAAAGAGAGACAGGAGAGAGTACACATTTAATTCTGCTTCCCCTAGGGTGATATTTCCTTCCTCCCCTTCCAGGGTTCTCAAAAAGGCATTCTAGGAAGTCCTGTAAAATACATGCTCATAAAAATCTCATAATTTCCACAAATTGTTGAGAATTTAAAACTCGGTTGGGAGTTTGCTGTTTCAGCCTGAGACACCGGGGTCACGTTTCAGTGCCTGCAGTCTTGAGACAGTACCAGGCATCTGGGATGAAGCTGAGGAAAGAAGATGTGGGGGCCCTGCTGGCCTGCTCCTTCTCTCGAAAGACGCTTACCGGCTGCTGGTGTGTCACAGGGCTTTAGGATTTGGAAAAACAGAGGGATTTAAAAGAAGATAGAATGGTCAGAATTTCGAGAACTGTGTGCTGAAGTGCCATCTTTAGGGTGCTCATAACACGGCCTTACAACATTAGAGGTGCTGGAATCATGGAAGAGGCATCTGGACTCTGTAATGTCCTTCCCCCTGGAAAATCTGCTCCAGAAGTGGGGGATTGGGAGCTGTCAACATATGAGCCATCTTTTGCTCCGTTCAAGATGGTAGGGGCATTCTCAACATGCCCCTCACTCTGATTCTGCCTCACTTTTATTTTAGAATTTTCCACTGCCTTTTCTGGAATGTGCTTTTTCAACCCTCAAAATCTGTAGAGAAGAAATAAGCAGAAACCGAAATGGCTTTCTGGTGTTCTCCATGCTCTCAGCTTACTGGAAAATCGAGCCGCAGGCTCGAGGCTGGACTTTAAGGCAGAGCACTGCAATTATAGTGCTATGGCCTTGGCTTCCTTTCTCATCACCCAGGTACAGTCCTGCAGTCCTCAGAGGATGCCAGTCCCACACAGGGGGATCCTTCTCCATAGGAAAACCGAGGAACAATGCAGGTTCGAGGTGCACAGTGGCTAAGCACACTCAGTCCTCAAGATCTTTCCTCTCAAATGCTAATGCTACCTTCAGATGGGCTGCTGCCTGCTACCATTTCAACATTGAGTCCTTTAAGATGCCATCAGAGAGAGGGGAAGCAAGAGGCCAAGAAAAATGAAAGGCCCTGCATGTTTTTCTTCGGGAAGGCTGTGCAGTCTGCTCTGAGGAGACAGATCAACCTAGCCCTTCTCCAGGACGAACTCCGAAAACCACAGGAATTCACGTTCAAAGGATGACGCATCTCAGAATCAGGTGGCCTTTAGTGAGCCAGTGGCTCGGATTTATGTGGTCAGATTCTGAGCCGGCAGACACAAGGACAAGCCAGCGAGAGGTGTGGCAGGACTGGAGATTCTGTGTAGTGAATTTTAGGAAAATGACTCGATAACTGCAACGGTGATGTCATGTGTGTGTCTACTTTAGAGAGCAGATGGTCGATCTGGTGCTAATTTGCCCAATACGGTAGCTACGCGGCAATGAAATTCCAAAACTGGCACAAGGCGGGCCTGGTTCCAGGGATCACTGGATCTAAAAGAAAAAATCCAATGAATGATGCATCCCACTGGCATTCCAAAGAGCAAGTAAACAAAAGAAATTATGGGTTTGGGCTCAGAAACCCCAACCCTTGAGATTTCAGAAAACAAAACGAC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-EXOC2-5]]
+
[[Category:Intergenic]][[Category:lnc-EXOC2-5]][[Category:NONHSAG042552]]

Revision as of 10:28, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-EXOC2-5:4

Source

LNCipedia2.1

Same with

NONHSAT106300

Classification

intergenic

Length

2177 nt

Genomic location

chr6-:958695..1101598

Exon number

5

Exons

958695..958828,962375..962528,998601..998707,1005633..1005763,1099948..1101598

Genome context

Sequence
000001 CTTGATTGCT GGGCCCTGGT TGAACTCCTT ATTAGTAACA CCCAGGTTAG TCCTACTTAA TTCTTACCTG CAGCCAAAGT 000080
000081 GGACTTAGCA TCTCCTTGCA TGCCTGGTAA AGTCAAGGGT TTTCAGCCAG GGCCTGTGTA TAAAGCAGAA GCAGCACAGA 000160
000161 GTCTGGTTTG AAGCTTAGTG CTTGGGTTCA GACAGTTGTG GGTTACAATC CCTTCTACAC ATGTTCTCTG TGGAAACCAT 000240
000241 TTGGTTCTCT GTGCTTGGAA CTCGCCTGCA ACGGGACAAA GCCATCTCAC CTAGACTGTT GTTATGAAGA TTGAATTAGG 000320
000321 TGATTCTGAG AGGCATTTAT GCGTCCTCCC TGAGTAACAA TCCATGAAAA GTGGGCGTCA TTGCTGAAGC TCAAGGAAGA 000400
000401 AATATGAAAT TTGATTATAT CCTTATTCAC GGCATTGGGT CACCAACTCA GCACTTTTTA TGAAAGTAGC ATCTGACCTG 000480
000481 GCAAAGGCTG TGTCATCTTA TTACCTCAGA AAGACAAATT TACGGGGTCA GACGATGGAT GGCTTGTAGA TTTCTCAATG 000560
000561 GGCTGGAAGG AAGGAGAGAA AAAGAGAGAC AGGAGAGAGT ACACATTTAA TTCTGCTTCC CCTAGGGTGA TATTTCCTTC 000640
000641 CTCCCCTTCC AGGGTTCTCA AAAAGGCATT CTAGGAAGTC CTGTAAAATA CATGCTCATA AAAATCTCAT AATTTCCACA 000720
000721 AATTGTTGAG AATTTAAAAC TCGGTTGGGA GTTTGCTGTT TCAGCCTGAG ACACCGGGGT CACGTTTCAG TGCCTGCAGT 000800
000801 CTTGAGACAG TACCAGGCAT CTGGGATGAA GCTGAGGAAA GAAGATGTGG GGGCCCTGCT GGCCTGCTCC TTCTCTCGAA 000880
000881 AGACGCTTAC CGGCTGCTGG TGTGTCACAG GGCTTTAGGA TTTGGAAAAA CAGAGGGATT TAAAAGAAGA TAGAATGGTC 000960
000961 AGAATTTCGA GAACTGTGTG CTGAAGTGCC ATCTTTAGGG TGCTCATAAC ACGGCCTTAC AACATTAGAG GTGCTGGAAT 001040
001041 CATGGAAGAG GCATCTGGAC TCTGTAATGT CCTTCCCCCT GGAAAATCTG CTCCAGAAGT GGGGGATTGG GAGCTGTCAA 001120
001121 CATATGAGCC ATCTTTTGCT CCGTTCAAGA TGGTAGGGGC ATTCTCAACA TGCCCCTCAC TCTGATTCTG CCTCACTTTT 001200
001201 ATTTTAGAAT TTTCCACTGC CTTTTCTGGA ATGTGCTTTT TCAACCCTCA AAATCTGTAG AGAAGAAATA AGCAGAAACC 001280
001281 GAAATGGCTT TCTGGTGTTC TCCATGCTCT CAGCTTACTG GAAAATCGAG CCGCAGGCTC GAGGCTGGAC TTTAAGGCAG 001360
001361 AGCACTGCAA TTATAGTGCT ATGGCCTTGG CTTCCTTTCT CATCACCCAG GTACAGTCCT GCAGTCCTCA GAGGATGCCA 001440
001441 GTCCCACACA GGGGGATCCT TCTCCATAGG AAAACCGAGG AACAATGCAG GTTCGAGGTG CACAGTGGCT AAGCACACTC 001520
001521 AGTCCTCAAG ATCTTTCCTC TCAAATGCTA ATGCTACCTT CAGATGGGCT GCTGCCTGCT ACCATTTCAA CATTGAGTCC 001600
001601 TTTAAGATGC CATCAGAGAG AGGGGAAGCA AGAGGCCAAG AAAAATGAAA GGCCCTGCAT GTTTTTCTTC GGGAAGGCTG 001680
001681 TGCAGTCTGC TCTGAGGAGA CAGATCAACC TAGCCCTTCT CCAGGACGAA CTCCGAAAAC CACAGGAATT CACGTTCAAA 001760
001761 GGATGACGCA TCTCAGAATC AGGTGGCCTT TAGTGAGCCA GTGGCTCGGA TTTATGTGGT CAGATTCTGA GCCGGCAGAC 001840
001841 ACAAGGACAA GCCAGCGAGA GGTGTGGCAG GACTGGAGAT TCTGTGTAGT GAATTTTAGG AAAATGACTC GATAACTGCA 001920
001921 ACGGTGATGT CATGTGTGTG TCTACTTTAG AGAGCAGATG GTCGATCTGG TGCTAATTTG CCCAATACGG TAGCTACGCG 002000
002001 G